RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 C12orf57Q99622 126 aa12.48□□□□□ -0.41
LIMS1-202ENST00000338045 AUP1Q9Y679 476 aa12.48□□□□□ -0.41
LIMS1-202ENST00000338045 RNASEK-C17orf49H0YIS7 233 aa12.48□□□□□ -0.41
LIMS1-202ENST00000338045 KBTBD11O94819 623 aa12.48□□□□□ -0.41
LIMS1-202ENST00000338045 LGALS7P47929 136 aa12.48□□□□□ -0.41
LIMS1-202ENST00000338045 RPS16P62249 146 aaKnown RBP12.48□□□□□ -0.41
LIMS1-202ENST00000338045 ARL16Q0P5N6 197 aa12.48□□□□□ -0.41
LIMS1-202ENST00000338045 SPINK9Q5DT21 86 aa12.48□□□□□ -0.41
LIMS1-202ENST00000338045 CFAP161Q6P656 301 aa12.48□□□□□ -0.41
LIMS1-202ENST00000338045 OR4A5Q8NH83 315 aa12.48□□□□□ -0.41
LIMS1-202ENST00000338045 VSTM2AQ8TAG5 236 aa12.48□□□□□ -0.41
LIMS1-202ENST00000338045 ATP5SQ99766 215 aa12.48□□□□□ -0.41
LIMS1-202ENST00000338045 USP9YO00507 2555 aaPredicted RBP12.47□□□□□ -0.41
LIMS1-202ENST00000338045 MED13LQ71F56 2210 aa12.47□□□□□ -0.41
LIMS1-202ENST00000338045 IGHV3-72A0A0B4J1Y9 119 aa12.47□□□□□ -0.41
LIMS1-202ENST00000338045 TRAV20A0A0B4J274 112 aa12.47□□□□□ -0.41
LIMS1-202ENST00000338045 PMS2P5A8MQ11 134 aa12.47□□□□□ -0.41
LIMS1-202ENST00000338045 FGF2P09038 288 aa12.47□□□□□ -0.41
LIMS1-202ENST00000338045 CEACAM3P40198 252 aa12.47□□□□□ -0.41
LIMS1-202ENST00000338045 DVL1P1P54792 670 aaPredicted RBP12.47□□□□□ -0.41
LIMS1-202ENST00000338045 COTL1Q14019 142 aa12.47□□□□□ -0.41
LIMS1-202ENST00000338045 PDZD9Q8IXQ8 264 aa12.47□□□□□ -0.41
LIMS1-202ENST00000338045 TMEM167AQ8TBQ9 72 aa12.47□□□□□ -0.41
LIMS1-202ENST00000338045 TBX15Q96SF7 602 aa12.47□□□□□ -0.41
LIMS1-202ENST00000338045 STRAPQ9Y3F4 350 aaKnown RBP12.47□□□□□ -0.41
LIMS1-202ENST00000338045 FGF16O43320 207 aa12.46□□□□□ -0.41
LIMS1-202ENST00000338045 DFFBO76075 338 aa12.46□□□□□ -0.41
LIMS1-202ENST00000338045 TOX4O94842 621 aa12.46□□□□□ -0.41
LIMS1-202ENST00000338045 SEC11BP0C7V7 166 aa12.46□□□□□ -0.41
LIMS1-202ENST00000338045 FAM157CP0CG43 387 aa12.46□□□□□ -0.41
LIMS1-202ENST00000338045 SPP1P10451 314 aa12.46□□□□□ -0.41
LIMS1-202ENST00000338045 USF1P22415 310 aaPredicted RBP12.46□□□□□ -0.41
LIMS1-202ENST00000338045 PCP4P48539 62 aa12.46□□□□□ -0.41
LIMS1-202ENST00000338045 HBG1P69891 147 aa12.46□□□□□ -0.41
LIMS1-202ENST00000338045 HBG2P69892 147 aa12.46□□□□□ -0.41
LIMS1-202ENST00000338045 HABP2Q14520 560 aaPredicted RBP12.46□□□□□ -0.41
LIMS1-202ENST00000338045 MOB3BQ86TA1 216 aa12.46□□□□□ -0.41
LIMS1-202ENST00000338045 MED9Q9NWA0 146 aa12.46□□□□□ -0.41
LIMS1-202ENST00000338045 FKBP11Q9NYL4 201 aa12.46□□□□□ -0.41
LIMS1-202ENST00000338045 OR51B2Q9Y5P1 312 aa12.46□□□□□ -0.41
LIMS1-202ENST00000338045 TET2Q6N021 2002 aaPredicted RBP12.46□□□□□ -0.41
LIMS1-202ENST00000338045 C15orf62A8K5M9 175 aa12.46□□□□□ -0.42
LIMS1-202ENST00000338045 KRTAP10-9P60411 292 aa12.46□□□□□ -0.42
LIMS1-202ENST00000338045 MINOS1Q5TGZ0 78 aa12.46□□□□□ -0.42
LIMS1-202ENST00000338045 OR5B3Q8NH48 314 aa12.46□□□□□ -0.42
LIMS1-202ENST00000338045 RNF141Q8WVD5 230 aa12.46□□□□□ -0.42
LIMS1-202ENST00000338045 RITA1Q96K30 269 aa12.46□□□□□ -0.42
LIMS1-202ENST00000338045 MINOS1-NBL1R4GNA1 71 aa12.46□□□□□ -0.42
LIMS1-202ENST00000338045 LINC00587B1AMM8 73 aa12.45□□□□□ -0.42
LIMS1-202ENST00000338045 TSPAN4O14817 238 aa12.45□□□□□ -0.42
LIMS1-202ENST00000338045 FBXO24O75426 580 aa12.45□□□□□ -0.42
LIMS1-202ENST00000338045 PRCDQ00LT1 54 aa12.45□□□□□ -0.42
LIMS1-202ENST00000338045 VMA21Q3ZAQ7 101 aa12.45□□□□□ -0.42
LIMS1-202ENST00000338045 LHFPL4Q7Z7J7 247 aa12.45□□□□□ -0.42
LIMS1-202ENST00000338045 CLCC1Q96S66 551 aa12.45□□□□□ -0.42
LIMS1-202ENST00000338045 TSNAXQ99598 290 aaKnown RBP12.45□□□□□ -0.42
LIMS1-202ENST00000338045 RNF5Q99942 180 aa12.45□□□□□ -0.42
LIMS1-202ENST00000338045 HIPK2Q9H2X6 1198 aa12.45□□□□□ -0.42
LIMS1-202ENST00000338045 PLA2G2EQ9NZK7 142 aa12.45□□□□□ -0.42
LIMS1-202ENST00000338045 TNCP24821 2201 aa12.45□□□□□ -0.42
LIMS1-202ENST00000338045 RAB19A4D1S5 217 aa12.44□□□□□ -0.42
LIMS1-202ENST00000338045 OOSP1A8MZH6 123 aa12.44□□□□□ -0.42
LIMS1-202ENST00000338045 NDUFS6O75380 124 aaKnown RBP12.44□□□□□ -0.42
LIMS1-202ENST00000338045 SCAF4O95104 1147 aaKnown RBP12.44□□□□□ -0.42
LIMS1-202ENST00000338045 MYOD1P15172 320 aa12.44□□□□□ -0.42
LIMS1-202ENST00000338045 TMEM11P17152 192 aa12.44□□□□□ -0.42
LIMS1-202ENST00000338045 CD1BP29016 333 aa12.44□□□□□ -0.42
LIMS1-202ENST00000338045 SULT1A2P50226 295 aa12.44□□□□□ -0.42
LIMS1-202ENST00000338045 UBE2E1P51965 193 aa12.44□□□□□ -0.42
LIMS1-202ENST00000338045 RPL8P62917 257 aaKnown RBP12.44□□□□□ -0.42
LIMS1-202ENST00000338045 PAX8Q06710 450 aa12.44□□□□□ -0.42
LIMS1-202ENST00000338045 THNSL2Q86YJ6 484 aa12.44□□□□□ -0.42
LIMS1-202ENST00000338045 TEX45Q8NA69 505 aa12.44□□□□□ -0.42
LIMS1-202ENST00000338045 CFHR4Q92496 578 aa12.44□□□□□ -0.42
LIMS1-202ENST00000338045 CXorf58Q96LI9 332 aa12.44□□□□□ -0.42
LIMS1-202ENST00000338045 TEX50A0A1B0GTY4 177 aa12.44□□□□□ -0.42
LIMS1-202ENST00000338045 TIMM23O14925 209 aa12.44□□□□□ -0.42
LIMS1-202ENST00000338045 CRYGBP07316 175 aa12.44□□□□□ -0.42
LIMS1-202ENST00000338045 SLC25A16P16260 332 aa12.44□□□□□ -0.42
LIMS1-202ENST00000338045 RPP30P78346 268 aaKnown RBP12.44□□□□□ -0.42
LIMS1-202ENST00000338045 SLC38A11Q08AI6 406 aa12.44□□□□□ -0.42
LIMS1-202ENST00000338045 C21orf62-AS1Q17RA5 79 aa12.44□□□□□ -0.42
LIMS1-202ENST00000338045 CLEC12BQ2HXU8 276 aa12.44□□□□□ -0.42
LIMS1-202ENST00000338045 MRGPRG-AS1Q2M3A8 158 aa12.44□□□□□ -0.42
LIMS1-202ENST00000338045 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.44□□□□□ -0.42
LIMS1-202ENST00000338045 HSD17B11Q8NBQ5 300 aa12.44□□□□□ -0.42
LIMS1-202ENST00000338045 PSMG3-AS1Q96PY0 264 aa12.44□□□□□ -0.42
LIMS1-202ENST00000338045 PARD6GQ9BYG4 376 aaPredicted RBP12.44□□□□□ -0.42
LIMS1-202ENST00000338045 HEYLQ9NQ87 328 aaPredicted RBP12.44□□□□□ -0.42
LIMS1-202ENST00000338045 DMRT1Q9Y5R6 373 aa12.44□□□□□ -0.42
LIMS1-202ENST00000338045 WNK2Q9Y3S1 2297 aa12.44□□□□□ -0.42
LIMS1-202ENST00000338045 ABCA2Q9BZC7 2435 aa12.43□□□□□ -0.42
LIMS1-202ENST00000338045 SLC25A17O43808 307 aa12.43□□□□□ -0.42
LIMS1-202ENST00000338045 VENTXO95231 258 aa12.43□□□□□ -0.42
LIMS1-202ENST00000338045 ATP6V0CP27449 155 aa12.43□□□□□ -0.42
LIMS1-202ENST00000338045 ATP6V1FQ16864 119 aa12.43□□□□□ -0.42
LIMS1-202ENST00000338045 OR10P1Q8NGE3 313 aa12.43□□□□□ -0.42
LIMS1-202ENST00000338045 PINX1Q96BK5 328 aaKnown RBP12.43□□□□□ -0.42
LIMS1-202ENST00000338045 SH3BGRL3Q9H299 93 aa12.43□□□□□ -0.42
LIMS1-202ENST00000338045 LPAR2Q9HBW0 351 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms