RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 CACNA1BQ00975 2339 aa8.77□□□□□ -1.01
CCDC88A-202ENST00000336838 CENPWQ5EE01 88 aa8.77□□□□□ -1.01
CCDC88A-202ENST00000336838 SDF2L1Q9HCN8 221 aa8.77□□□□□ -1.01
CCDC88A-202ENST00000336838 ELOVL5Q9NYP7 299 aa8.77□□□□□ -1.01
CCDC88A-202ENST00000336838 DEFB123Q8N688 67 aa8.77□□□□□ -1.01
CCDC88A-202ENST00000336838 AGMATQ9BSE5 352 aa8.77□□□□□ -1.01
CCDC88A-202ENST00000336838 RALYQ9UKM9 306 aaKnown RBP8.77□□□□□ -1.01
CCDC88A-202ENST00000336838 THSD7BQ9C0I4 1608 aa8.77□□□□□ -1.01
CCDC88A-202ENST00000336838 NUBP1P53384 320 aa8.77□□□□□ -1.01
CCDC88A-202ENST00000336838 Q6ZS49 121 aa8.77□□□□□ -1.01
CCDC88A-202ENST00000336838 PRNTQ86SH4 94 aa8.77□□□□□ -1.01
CCDC88A-202ENST00000336838 LINC00469Q8N7U9 141 aa8.77□□□□□ -1.01
CCDC88A-202ENST00000336838 OR9G1Q8NH87 305 aa8.77□□□□□ -1.01
CCDC88A-202ENST00000336838 MIEN1Q9BRT3 115 aa8.77□□□□□ -1.01
CCDC88A-202ENST00000336838 GPR61Q9BZJ8 451 aa8.77□□□□□ -1.01
CCDC88A-202ENST00000336838 MMDQ15546 238 aa8.76□□□□□ -1.01
CCDC88A-202ENST00000336838 MIC13Q5XKP0 118 aa8.76□□□□□ -1.01
CCDC88A-202ENST00000336838 TMUB1Q9BVT8 246 aa8.76□□□□□ -1.01
CCDC88A-202ENST00000336838 A0A1B0GV72 72 aa8.76□□□□□ -1.01
CCDC88A-202ENST00000336838 ATP5LO75964 103 aa8.76□□□□□ -1.01
CCDC88A-202ENST00000336838 CSN3P07498 182 aa8.76□□□□□ -1.01
CCDC88A-202ENST00000336838 RELQ04864 619 aaPredicted RBP8.76□□□□□ -1.01
CCDC88A-202ENST00000336838 SRSF5Q13243 272 aaKnown RBP8.76□□□□□ -1.01
CCDC88A-202ENST00000336838 DNM1P46Q6ZS02 220 aa8.76□□□□□ -1.01
CCDC88A-202ENST00000336838 DRAM1Q8N682 238 aa8.76□□□□□ -1.01
CCDC88A-202ENST00000336838 OR10J6PQ8NGY7 276 aa8.76□□□□□ -1.01
CCDC88A-202ENST00000336838 CLDN16Q9Y5I7 305 aa8.76□□□□□ -1.01
CCDC88A-202ENST00000336838 KLK10O43240 276 aa8.76□□□□□ -1.01
CCDC88A-202ENST00000336838 STAG3L3P0CL85 134 aa8.76□□□□□ -1.01
CCDC88A-202ENST00000336838 PCOLCEQ15113 449 aa8.76□□□□□ -1.01
CCDC88A-202ENST00000336838 HEPN1Q6WQI6 88 aa8.76□□□□□ -1.01
CCDC88A-202ENST00000336838 ZNF784Q8NCA9 323 aaPredicted RBP8.76□□□□□ -1.01
CCDC88A-202ENST00000336838 MAFAQ8NHW3 353 aaPredicted RBP8.76□□□□□ -1.01
CCDC88A-202ENST00000336838 ZDHHC16Q969W1 377 aa8.76□□□□□ -1.01
CCDC88A-202ENST00000336838 DCAF16Q9NXF7 216 aa8.76□□□□□ -1.01
CCDC88A-202ENST00000336838 RNF126Q9BV68 326 aa8.76□□□□□ -1.01
CCDC88A-202ENST00000336838 FZR1Q9UM11 496 aa8.76□□□□□ -1.01
CCDC88A-202ENST00000336838 A0A1W2PP11 408 aa8.76□□□□□ -1.01
CCDC88A-202ENST00000336838 MSL2Q9HCI7 577 aa8.76□□□□□ -1.01
CCDC88A-202ENST00000336838 LY96Q9Y6Y9 160 aa8.76□□□□□ -1.01
CCDC88A-202ENST00000336838 FAM166AQ6J272 317 aa8.76□□□□□ -1.01
CCDC88A-202ENST00000336838 M0R3E3 92 aa8.75□□□□□ -1.01
CCDC88A-202ENST00000336838 MFAP4P55083 255 aa8.75□□□□□ -1.01
CCDC88A-202ENST00000336838 KLF14Q8TD94 323 aaPredicted RBP8.75□□□□□ -1.01
CCDC88A-202ENST00000336838 SAP25Q8TEE9 199 aa8.75□□□□□ -1.01
CCDC88A-202ENST00000336838 NRTNQ99748 197 aa8.75□□□□□ -1.01
CCDC88A-202ENST00000336838 FOXD3Q9UJU5 478 aaPredicted RBP8.75□□□□□ -1.01
CCDC88A-202ENST00000336838 SS18L1O75177 396 aaPredicted RBP8.75□□□□□ -1.01
CCDC88A-202ENST00000336838 ZNF256Q9Y2P7 627 aaPredicted RBP8.75□□□□□ -1.01
CCDC88A-202ENST00000336838 MBD3L1Q8WWY6 194 aa8.75□□□□□ -1.01
CCDC88A-202ENST00000336838 ZNF488Q96MN9 340 aa8.75□□□□□ -1.01
CCDC88A-202ENST00000336838 CIRBPQ14011 172 aaKnown RBP8.75□□□□□ -1.01
CCDC88A-202ENST00000336838 IZUMO1RA6ND01 250 aa8.75□□□□□ -1.01
CCDC88A-202ENST00000336838 ACP7Q6ZNF0 438 aa8.75□□□□□ -1.01
CCDC88A-202ENST00000336838 TSPOP30536 169 aa8.75□□□□□ -1.01
CCDC88A-202ENST00000336838 NABP2Q9BQ15 211 aa8.75□□□□□ -1.01
CCDC88A-202ENST00000336838 CACNA1GO43497 2377 aa8.75□□□□□ -1.01
CCDC88A-202ENST00000336838 FOXL1Q12952 345 aa8.74□□□□□ -1.01
CCDC88A-202ENST00000336838 RTN4RL2Q86UN3 420 aa8.74□□□□□ -1.01
CCDC88A-202ENST00000336838 OR1N2Q8NGR9 330 aa8.74□□□□□ -1.01
CCDC88A-202ENST00000336838 A0A1B0GUT8 65 aa8.74□□□□□ -1.01
CCDC88A-202ENST00000336838 ICAM4Q14773 271 aa8.74□□□□□ -1.01
CCDC88A-202ENST00000336838 TBR1Q16650 682 aa8.74□□□□□ -1.01
CCDC88A-202ENST00000336838 SPSB2Q99619 263 aa8.74□□□□□ -1.01
CCDC88A-202ENST00000336838 NPIPB6E9PJ23 425 aa8.74□□□□□ -1.01
CCDC88A-202ENST00000336838 NMUP48645 174 aa8.74□□□□□ -1.01
CCDC88A-202ENST00000336838 MEF2CQ06413 473 aaPredicted RBP8.74□□□□□ -1.01
CCDC88A-202ENST00000336838 RAB37Q96AX2 223 aa8.74□□□□□ -1.01
CCDC88A-202ENST00000336838 CHCHD1Q96BP2 118 aaKnown RBP8.74□□□□□ -1.01
CCDC88A-202ENST00000336838 ZNF414Q96IQ9 312 aa8.74□□□□□ -1.01
CCDC88A-202ENST00000336838 HIST1H2BKO60814 126 aa8.74□□□□□ -1.01
CCDC88A-202ENST00000336838 HIST1H2BJP06899 126 aa8.74□□□□□ -1.01
CCDC88A-202ENST00000336838 SMIM13P0DJ93 91 aa8.74□□□□□ -1.01
CCDC88A-202ENST00000336838 HIST1H2BOP23527 126 aa8.74□□□□□ -1.01
CCDC88A-202ENST00000336838 HIST1H2BBP33778 126 aa8.74□□□□□ -1.01
CCDC88A-202ENST00000336838 HIST1H2BDP58876 126 aa8.74□□□□□ -1.01
CCDC88A-202ENST00000336838 HIST1H2BCP62807 126 aa8.74□□□□□ -1.01
CCDC88A-202ENST00000336838 HIST2H2BEQ16778 126 aa8.74□□□□□ -1.01
CCDC88A-202ENST00000336838 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.74□□□□□ -1.01
CCDC88A-202ENST00000336838 OR4D5Q8NGN0 318 aa8.74□□□□□ -1.01
CCDC88A-202ENST00000336838 HIST1H2BHQ93079 126 aa8.74□□□□□ -1.01
CCDC88A-202ENST00000336838 HIST1H2BNQ99877 126 aa8.74□□□□□ -1.01
CCDC88A-202ENST00000336838 HIST1H2BMQ99879 126 aa8.74□□□□□ -1.01
CCDC88A-202ENST00000336838 OSTCQ9NRP0 149 aa8.74□□□□□ -1.01
CCDC88A-202ENST00000336838 GPR6P46095 362 aaPredicted RBP8.74□□□□□ -1.01
CCDC88A-202ENST00000336838 LHFPL1Q86WI0 220 aa8.74□□□□□ -1.01
CCDC88A-202ENST00000336838 A0A1W2PR80 420 aa8.74□□□□□ -1.01
CCDC88A-202ENST00000336838 COX7A1P24310 79 aa8.74□□□□□ -1.01
CCDC88A-202ENST00000336838 GLRXP35754 106 aa8.74□□□□□ -1.01
CCDC88A-202ENST00000336838 RNFT1Q5M7Z0 435 aa8.74□□□□□ -1.01
CCDC88A-202ENST00000336838 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.74□□□□□ -1.01
CCDC88A-202ENST00000336838 LYPD3O95274 346 aa8.74□□□□□ -1.01
CCDC88A-202ENST00000336838 FHITP49789 147 aa8.74□□□□□ -1.01
CCDC88A-202ENST00000336838 BEND2Q8NDZ0 799 aa8.74□□□□□ -1.01
CCDC88A-202ENST00000336838 ST20Q9HBF5 79 aa8.74□□□□□ -1.01
CCDC88A-202ENST00000336838 RABAC1Q9UI14 185 aa8.74□□□□□ -1.01
CCDC88A-202ENST00000336838 TBL2Q9Y4P3 447 aaKnown RBP8.74□□□□□ -1.01
CCDC88A-202ENST00000336838 PPBPP02775 128 aa8.74□□□□□ -1.01
CCDC88A-202ENST00000336838 NBASA2RRP1 2371 aa8.73□□□□□ -1.01
CCDC88A-202ENST00000336838 TRBV6-6A0A0A6YYG2 114 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms