RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 VKORC1L1Q8N0U8 176 aa11.2□□□□□ -0.62
CCDC88C-201ENST00000331194 NEUROG1Q92886 237 aa11.2□□□□□ -0.62
CCDC88C-201ENST00000331194 GP6Q9HCN6 339 aa11.2□□□□□ -0.62
CCDC88C-201ENST00000331194 KMT2EQ8IZD2 1858 aa11.19□□□□□ -0.62
CCDC88C-201ENST00000331194 TRBV6-6A0A0A6YYG2 114 aa11.19□□□□□ -0.62
CCDC88C-201ENST00000331194 NEURL1O76050 574 aa11.19□□□□□ -0.62
CCDC88C-201ENST00000331194 GOSR1O95249 250 aa11.19□□□□□ -0.62
CCDC88C-201ENST00000331194 CXCL12P48061 93 aa11.19□□□□□ -0.62
CCDC88C-201ENST00000331194 B3GALT5-AS1P59052 145 aa11.19□□□□□ -0.62
CCDC88C-201ENST00000331194 VWC2Q2TAL6 325 aa11.19□□□□□ -0.62
CCDC88C-201ENST00000331194 TREML4Q6UXN2 200 aa11.19□□□□□ -0.62
CCDC88C-201ENST00000331194 KIR3DL3Q8N743 410 aa11.19□□□□□ -0.62
CCDC88C-201ENST00000331194 MGST2Q99735 147 aa11.19□□□□□ -0.62
CCDC88C-201ENST00000331194 MS4A5Q9H3V2 200 aa11.19□□□□□ -0.62
CCDC88C-201ENST00000331194 LRP5LA4QPB2 252 aa11.19□□□□□ -0.62
CCDC88C-201ENST00000331194 LINC00473A8K010 186 aa11.19□□□□□ -0.62
CCDC88C-201ENST00000331194 STAG3L2P0CL84 134 aa11.19□□□□□ -0.62
CCDC88C-201ENST00000331194 STAG3L3P0CL85 134 aa11.19□□□□□ -0.62
CCDC88C-201ENST00000331194 PSG1P11464 419 aa11.19□□□□□ -0.62
CCDC88C-201ENST00000331194 IGLL1P15814 213 aa11.19□□□□□ -0.62
CCDC88C-201ENST00000331194 DUSP3P51452 185 aaPredicted RBP11.19□□□□□ -0.62
CCDC88C-201ENST00000331194 SRYQ05066 204 aa11.19□□□□□ -0.62
CCDC88C-201ENST00000331194 PCOLCEQ15113 449 aa11.19□□□□□ -0.62
CCDC88C-201ENST00000331194 ZNF718Q3SXZ3 478 aa11.19□□□□□ -0.62
CCDC88C-201ENST00000331194 PDLIM3Q53GG5 364 aaPredicted RBP11.19□□□□□ -0.62
CCDC88C-201ENST00000331194 PQLC2Q6ZP29 291 aa11.19□□□□□ -0.62
CCDC88C-201ENST00000331194 SPATA12Q7Z6I5 190 aa11.19□□□□□ -0.62
CCDC88C-201ENST00000331194 SF3B5Q9BWJ5 86 aaKnown RBP11.19□□□□□ -0.62
CCDC88C-201ENST00000331194 FAM234AQ9H0X4 552 aa11.19□□□□□ -0.62
CCDC88C-201ENST00000331194 SLC35D1Q9NTN3 355 aa11.19□□□□□ -0.62
CCDC88C-201ENST00000331194 TET2Q6N021 2002 aaPredicted RBP11.18□□□□□ -0.62
CCDC88C-201ENST00000331194 ACTL6BO94805 426 aa11.18□□□□□ -0.62
CCDC88C-201ENST00000331194 CGAP01215 116 aa11.18□□□□□ -0.62
CCDC88C-201ENST00000331194 ZNF497Q6ZNH5 498 aa11.18□□□□□ -0.62
CCDC88C-201ENST00000331194 ABHD12Q8N2K0 398 aa11.18□□□□□ -0.62
CCDC88C-201ENST00000331194 TPRX1Q8N7U7 411 aa11.18□□□□□ -0.62
CCDC88C-201ENST00000331194 NHLRC2Q8NBF2 726 aa11.18□□□□□ -0.62
CCDC88C-201ENST00000331194 OR4F17Q8NGA8 305 aa11.18□□□□□ -0.62
CCDC88C-201ENST00000331194 ZNF596Q8TC21 504 aa11.18□□□□□ -0.62
CCDC88C-201ENST00000331194 GNB1LQ9BYB4 327 aa11.18□□□□□ -0.62
CCDC88C-201ENST00000331194 AHRRA9YTQ3 701 aa11.18□□□□□ -0.62
CCDC88C-201ENST00000331194 OR9G9P0C7N8 305 aa11.18□□□□□ -0.62
CCDC88C-201ENST00000331194 TCTEX1D1Q8N7M0 179 aa11.18□□□□□ -0.62
CCDC88C-201ENST00000331194 BORCS7Q96B45 105 aa11.18□□□□□ -0.62
CCDC88C-201ENST00000331194 ADAMTS20P59510 1910 aa11.18□□□□□ -0.62
CCDC88C-201ENST00000331194 CFIP05156 583 aa11.18□□□□□ -0.62
CCDC88C-201ENST00000331194 CRYBB3P26998 211 aa11.18□□□□□ -0.62
CCDC88C-201ENST00000331194 NXPH1P58417 271 aa11.18□□□□□ -0.62
CCDC88C-201ENST00000331194 LTC4SQ16873 150 aa11.18□□□□□ -0.62
CCDC88C-201ENST00000331194 CENPWQ5EE01 88 aa11.18□□□□□ -0.62
CCDC88C-201ENST00000331194 STUMQ69YW2 141 aa11.18□□□□□ -0.62
CCDC88C-201ENST00000331194 RFESDQ8TAC1 157 aa11.18□□□□□ -0.62
CCDC88C-201ENST00000331194 SERTAD4Q9NUC0 356 aa11.18□□□□□ -0.62
CCDC88C-201ENST00000331194 MRPS17Q9Y2R5 130 aaKnown RBP11.18□□□□□ -0.62
CCDC88C-201ENST00000331194 PIGBOS1A0A0B4J2F0 54 aa11.17□□□□□ -0.62
CCDC88C-201ENST00000331194 TNFSF4P23510 183 aa11.17□□□□□ -0.62
CCDC88C-201ENST00000331194 GCHFRP30047 84 aa11.17□□□□□ -0.62
CCDC88C-201ENST00000331194 SLAQ13239 276 aa11.17□□□□□ -0.62
CCDC88C-201ENST00000331194 TNXAQ16473 311 aa11.17□□□□□ -0.62
CCDC88C-201ENST00000331194 EBLN2Q6P2I7 272 aa11.17□□□□□ -0.62
CCDC88C-201ENST00000331194 SSBP3Q9BWW4 388 aaPredicted RBP11.17□□□□□ -0.62
CCDC88C-201ENST00000331194 CDC42EP3Q9UKI2 254 aa11.17□□□□□ -0.62
CCDC88C-201ENST00000331194 IGHV2-26A0A0B4J1V2 119 aa11.17□□□□□ -0.62
CCDC88C-201ENST00000331194 IGLC7A0M8Q6 106 aa11.17□□□□□ -0.62
CCDC88C-201ENST00000331194 NPIPB11E5RHQ5 1161 aa11.17□□□□□ -0.62
CCDC88C-201ENST00000331194 CXorf1O96002 111 aa11.17□□□□□ -0.62
CCDC88C-201ENST00000331194 IGHV3-13P01766 116 aa11.17□□□□□ -0.62
CCDC88C-201ENST00000331194 IGHV3-7P01780 117 aa11.17□□□□□ -0.62
CCDC88C-201ENST00000331194 BMI1P35226 326 aa11.17□□□□□ -0.62
CCDC88C-201ENST00000331194 MPV17L2Q567V2 206 aa11.17□□□□□ -0.62
CCDC88C-201ENST00000331194 DCAF12Q5T6F0 453 aa11.17□□□□□ -0.62
CCDC88C-201ENST00000331194 OR4P4Q8NGL7 312 aa11.17□□□□□ -0.62
CCDC88C-201ENST00000331194 FAM168AQ92567 244 aa11.17□□□□□ -0.62
CCDC88C-201ENST00000331194 GGTLC1Q9BX51 225 aa11.17□□□□□ -0.62
CCDC88C-201ENST00000331194 RARRES3Q9UL19 164 aa11.17□□□□□ -0.62
CCDC88C-201ENST00000331194 GPR6P46095 362 aaPredicted RBP11.16□□□□□ -0.62
CCDC88C-201ENST00000331194 WDR86Q86TI4 376 aa11.16□□□□□ -0.62
CCDC88C-201ENST00000331194 KLHDC1Q8N7A1 406 aa11.16□□□□□ -0.62
CCDC88C-201ENST00000331194 ZNF645Q8N7E2 425 aa11.16□□□□□ -0.62
CCDC88C-201ENST00000331194 ZNF439Q8NDP4 499 aa11.16□□□□□ -0.62
CCDC88C-201ENST00000331194 RAB1CQ92928 201 aa11.16□□□□□ -0.62
CCDC88C-201ENST00000331194 C1orf159Q96HA4 380 aa11.16□□□□□ -0.62
CCDC88C-201ENST00000331194 OCIAD1Q9NX40 245 aa11.16□□□□□ -0.62
CCDC88C-201ENST00000331194 PSPNO60542 156 aa11.16□□□□□ -0.62
CCDC88C-201ENST00000331194 CX3CL1P78423 397 aa11.16□□□□□ -0.62
CCDC88C-201ENST00000331194 TNCP24821 2201 aa11.16□□□□□ -0.62
CCDC88C-201ENST00000331194 OR2T8A6NH00 312 aa11.15□□□□□ -0.62
CCDC88C-201ENST00000331194 SH2D7A6NKC9 451 aaPredicted RBP11.15□□□□□ -0.62
CCDC88C-201ENST00000331194 ANKRD30BLA7E2S9 258 aa11.15□□□□□ -0.62
CCDC88C-201ENST00000331194 CDIPTO14735 213 aa11.15□□□□□ -0.62
CCDC88C-201ENST00000331194 SSR4P51571 173 aa11.15□□□□□ -0.62
CCDC88C-201ENST00000331194 GNG3P63215 75 aa11.15□□□□□ -0.62
CCDC88C-201ENST00000331194 AESQ08117 197 aa11.15□□□□□ -0.62
CCDC88C-201ENST00000331194 PMCHL1Q16048 86 aa11.15□□□□□ -0.62
CCDC88C-201ENST00000331194 TNFRSF14Q92956 283 aa11.15□□□□□ -0.62
CCDC88C-201ENST00000331194 MEGF9Q9H1U4 602 aa11.15□□□□□ -0.62
CCDC88C-201ENST00000331194 MRPS16Q9Y3D3 137 aaKnown RBP11.15□□□□□ -0.62
CCDC88C-201ENST00000331194 TNRC6AQ8NDV7 1962 aaKnown RBP11.15□□□□□ -0.62
CCDC88C-201ENST00000331194 CACNA1GO43497 2377 aa11.15□□□□□ -0.62
CCDC88C-201ENST00000331194 TRAV3A0A0B4J244 114 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms