RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 A0A1W2PRS3 328 aa9.79□□□□□ -0.84
VPS39-201ENST00000318006 AHRRA9YTQ3 701 aa9.79□□□□□ -0.84
VPS39-201ENST00000318006 CRXO43186 299 aaPredicted RBP9.79□□□□□ -0.84
VPS39-201ENST00000318006 RBFOX2O43251 390 aaKnown RBP eCLIP9.79□□□□□ -0.84
VPS39-201ENST00000318006 TNFSF13O75888 250 aa9.79□□□□□ -0.84
VPS39-201ENST00000318006 GATAD1Q8WUU5 269 aa9.79□□□□□ -0.84
VPS39-201ENST00000318006 SRXN1Q9BYN0 137 aa9.79□□□□□ -0.84
VPS39-201ENST00000318006 CEP250Q9BV73 2442 aa9.79□□□□□ -0.84
VPS39-201ENST00000318006 TRAV9-2A0A087WT02 112 aa9.79□□□□□ -0.84
VPS39-201ENST00000318006 OR11H12B2RN74 326 aa9.79□□□□□ -0.84
VPS39-201ENST00000318006 J3KRW8 73 aa9.79□□□□□ -0.84
VPS39-201ENST00000318006 CA1P00915 261 aaPredicted RBP9.79□□□□□ -0.84
VPS39-201ENST00000318006 RBPMS2Q6ZRY4 209 aaKnown RBP9.79□□□□□ -0.84
VPS39-201ENST00000318006 OR11H1Q8NG94 326 aa9.79□□□□□ -0.84
VPS39-201ENST00000318006 OR11H2Q8NH07 326 aa9.79□□□□□ -0.84
VPS39-201ENST00000318006 MEGF9Q9H1U4 602 aa9.79□□□□□ -0.84
VPS39-201ENST00000318006 TNFRSF19Q9NS68 423 aa9.79□□□□□ -0.84
VPS39-201ENST00000318006 ZSWIM8A7E2V4 1837 aa9.78□□□□□ -0.84
VPS39-201ENST00000318006 C1QTNF9BB2RNN3 333 aa9.78□□□□□ -0.84
VPS39-201ENST00000318006 H3BUT2 72 aa9.78□□□□□ -0.84
VPS39-201ENST00000318006 SNAI2O43623 268 aa9.78□□□□□ -0.84
VPS39-201ENST00000318006 GPR183P32249 361 aa9.78□□□□□ -0.84
VPS39-201ENST00000318006 RPL27AP46776 148 aaKnown RBP9.78□□□□□ -0.84
VPS39-201ENST00000318006 OR51G1Q8NGK1 321 aa9.78□□□□□ -0.84
VPS39-201ENST00000318006 FAM131CQ96AQ9 280 aa9.78□□□□□ -0.84
VPS39-201ENST00000318006 VCX2Q9H322 139 aa9.78□□□□□ -0.84
VPS39-201ENST00000318006 C1orf185Q5T7R7 199 aa9.78□□□□□ -0.84
VPS39-201ENST00000318006 NUDT11Q96G61 164 aa9.78□□□□□ -0.84
VPS39-201ENST00000318006 CNOT1A5YKK6 2376 aaKnown RBP9.78□□□□□ -0.84
VPS39-201ENST00000318006 CXCL1P09341 107 aa9.78□□□□□ -0.84
VPS39-201ENST00000318006 APELAP0DMC3 54 aa9.78□□□□□ -0.84
VPS39-201ENST00000318006 ADMP35318 185 aa9.78□□□□□ -0.84
VPS39-201ENST00000318006 RPL8P62917 257 aaKnown RBP9.78□□□□□ -0.84
VPS39-201ENST00000318006 C10orf128Q5T292 105 aa9.78□□□□□ -0.84
VPS39-201ENST00000318006 C1orf194Q5T5A4 169 aa9.78□□□□□ -0.84
VPS39-201ENST00000318006 DRAM1Q8N682 238 aa9.78□□□□□ -0.84
VPS39-201ENST00000318006 GCSAMQ8N6F7 178 aa9.78□□□□□ -0.84
VPS39-201ENST00000318006 RRHO14718 337 aa9.77□□□□□ -0.84
VPS39-201ENST00000318006 NDUFA2O43678 99 aa9.77□□□□□ -0.84
VPS39-201ENST00000318006 MPZP25189 248 aa9.77□□□□□ -0.84
VPS39-201ENST00000318006 ATP5G3P48201 142 aa9.77□□□□□ -0.84
VPS39-201ENST00000318006 RND2P52198 227 aa9.77□□□□□ -0.84
VPS39-201ENST00000318006 ABHD12Q8N2K0 398 aa9.77□□□□□ -0.84
VPS39-201ENST00000318006 GTF3AQ92664 365 aaKnown RBP9.77□□□□□ -0.84
VPS39-201ENST00000318006 CHCHD2Q9Y6H1 151 aaPredicted RBP9.77□□□□□ -0.84
VPS39-201ENST00000318006 SCO2A0A1W2PP80 73 aa9.77□□□□□ -0.85
VPS39-201ENST00000318006 SH2D7A6NKC9 451 aaPredicted RBP9.77□□□□□ -0.85
VPS39-201ENST00000318006 MPV17P39210 176 aa9.77□□□□□ -0.85
VPS39-201ENST00000318006 LINC00114Q6XXX2 140 aa9.77□□□□□ -0.85
VPS39-201ENST00000318006 ZNF525Q8N782 197 aa9.77□□□□□ -0.85
VPS39-201ENST00000318006 FLVCR1-AS1Q8TAF5 88 aa9.77□□□□□ -0.85
VPS39-201ENST00000318006 IL6RP08887 468 aaPredicted RBP9.77□□□□□ -0.85
VPS39-201ENST00000318006 TBR1Q16650 682 aa9.77□□□□□ -0.85
VPS39-201ENST00000318006 MRPL16Q9NX20 251 aaKnown RBP9.77□□□□□ -0.85
VPS39-201ENST00000318006 C1RLQ9NZP8 487 aa9.77□□□□□ -0.85
VPS39-201ENST00000318006 SRCAPQ6ZRS2 3230 aa9.77□□□□□ -0.85
VPS39-201ENST00000318006 IGHV3OR15-7A0A075B7D8 119 aa9.77□□□□□ -0.85
VPS39-201ENST00000318006 ATXN7O15265 892 aaPredicted RBP9.77□□□□□ -0.85
VPS39-201ENST00000318006 MMDQ15546 238 aa9.77□□□□□ -0.85
VPS39-201ENST00000318006 C1QL2Q7Z5L3 287 aa9.77□□□□□ -0.85
VPS39-201ENST00000318006 ZNF714Q96N38 554 aa9.77□□□□□ -0.85
VPS39-201ENST00000318006 SIGMAR1Q99720 223 aa9.77□□□□□ -0.85
VPS39-201ENST00000318006 DOCK6Q96HP0 2047 aa9.76□□□□□ -0.85
VPS39-201ENST00000318006 LOC101059948A0A1B0GTJ6 334 aa9.76□□□□□ -0.85
VPS39-201ENST00000318006 ZNHIT1O43257 154 aa9.76□□□□□ -0.85
VPS39-201ENST00000318006 ZIC3O60481 467 aa9.76□□□□□ -0.85
VPS39-201ENST00000318006 COX5BP10606 129 aa9.76□□□□□ -0.85
VPS39-201ENST00000318006 LGALS3P17931 250 aaKnown RBP9.76□□□□□ -0.85
VPS39-201ENST00000318006 IGFBP3P17936 291 aaPredicted RBP9.76□□□□□ -0.85
VPS39-201ENST00000318006 REG1BP48304 166 aa9.76□□□□□ -0.85
VPS39-201ENST00000318006 ATP5IP56385 69 aaPredicted RBP9.76□□□□□ -0.85
VPS39-201ENST00000318006 PRDM14Q9GZV8 571 aa9.76□□□□□ -0.85
VPS39-201ENST00000318006 TRAV8-6A0A0B4J262 113 aa9.76□□□□□ -0.85
VPS39-201ENST00000318006 RIPPLY3P57055 190 aa9.76□□□□□ -0.85
VPS39-201ENST00000318006 TCF23Q7RTU1 214 aa9.76□□□□□ -0.85
VPS39-201ENST00000318006 ASCL5Q7RTU5 278 aa9.76□□□□□ -0.85
VPS39-201ENST00000318006 OR5A1Q8NGJ0 315 aa9.76□□□□□ -0.85
VPS39-201ENST00000318006 WNT5BQ9H1J7 359 aa9.76□□□□□ -0.85
VPS39-201ENST00000318006 IZUMO1RA6ND01 250 aa9.76□□□□□ -0.85
VPS39-201ENST00000318006 ZNF883P0CG24 379 aa9.76□□□□□ -0.85
VPS39-201ENST00000318006 CEACAM1P13688 526 aa9.76□□□□□ -0.85
VPS39-201ENST00000318006 HIST1H1AQ02539 215 aaPredicted RBP9.76□□□□□ -0.85
VPS39-201ENST00000318006 TMEM78Q5T7P6 136 aa9.76□□□□□ -0.85
VPS39-201ENST00000318006 TMEM54Q969K7 222 aa9.76□□□□□ -0.85
VPS39-201ENST00000318006 SGK494Q96LW2 274 aa9.76□□□□□ -0.85
VPS39-201ENST00000318006 CDX4O14627 284 aaPredicted RBP9.76□□□□□ -0.85
VPS39-201ENST00000318006 APOHP02749 345 aaPredicted RBP9.76□□□□□ -0.85
VPS39-201ENST00000318006 PRSS2P07478 247 aa9.76□□□□□ -0.85
VPS39-201ENST00000318006 ZDHHC16Q969W1 377 aa9.76□□□□□ -0.85
VPS39-201ENST00000318006 EP300Q09472 2414 aaPredicted RBP9.76□□□□□ -0.85
VPS39-201ENST00000318006 MGAMO43451 1857 aa9.76□□□□□ -0.85
VPS39-201ENST00000318006 UCNP55089 124 aa9.75□□□□□ -0.85
VPS39-201ENST00000318006 CCL20P78556 96 aa9.75□□□□□ -0.85
VPS39-201ENST00000318006 ZNF441Q8N8Z8 693 aa9.75□□□□□ -0.85
VPS39-201ENST00000318006 ZNF257Q9Y2Q1 563 aa9.75□□□□□ -0.85
VPS39-201ENST00000318006 PPIAL4DF5H284 164 aa9.75□□□□□ -0.85
VPS39-201ENST00000318006 MC5RP33032 325 aa9.75□□□□□ -0.85
VPS39-201ENST00000318006 MEF2CQ06413 473 aaPredicted RBP9.75□□□□□ -0.85
VPS39-201ENST00000318006 TFF3Q07654 80 aa9.75□□□□□ -0.85
VPS39-201ENST00000318006 LRTM2Q8N967 370 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms