RNA–Protein interactions for RNA: ENST00000306726.6

PTPN9-201, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PTPN9, Length 3,862 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-201ENST00000306726 ZNF295-AS1Q8N0V1 137 aa12.18□□□□□ -0.46
PTPN9-201ENST00000306726 FAM173AQ9BQD7 235 aa12.18□□□□□ -0.46
PTPN9-201ENST00000306726 MS4A5Q9H3V2 200 aa12.18□□□□□ -0.46
PTPN9-201ENST00000306726 SNAI2O43623 268 aa12.17□□□□□ -0.46
PTPN9-201ENST00000306726 C11orf42Q8N5U0 333 aa12.17□□□□□ -0.46
PTPN9-201ENST00000306726 LINC00479Q96M42 142 aa12.17□□□□□ -0.46
PTPN9-201ENST00000306726 SMDT1Q9H4I9 107 aa12.17□□□□□ -0.46
PTPN9-201ENST00000306726 SEPSECSQ9HD40 501 aaKnown RBP12.17□□□□□ -0.46
PTPN9-201ENST00000306726 PLSCR2Q9NRY7 297 aa12.17□□□□□ -0.46
PTPN9-201ENST00000306726 DECR2Q9NUI1 292 aa12.17□□□□□ -0.46
PTPN9-201ENST00000306726 GOLT1BQ9Y3E0 138 aa12.17□□□□□ -0.46
PTPN9-201ENST00000306726 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.17□□□□□ -0.46
PTPN9-201ENST00000306726 OR5AU1Q8NGC0 362 aa12.17□□□□□ -0.46
PTPN9-201ENST00000306726 PMCHL2Q9BQD1 86 aa12.17□□□□□ -0.46
PTPN9-201ENST00000306726 MALRD1Q5VYJ5 2156 aa12.17□□□□□ -0.46
PTPN9-201ENST00000306726 NEURL1O76050 574 aa12.17□□□□□ -0.46
PTPN9-201ENST00000306726 SPCS3P61009 180 aa12.17□□□□□ -0.46
PTPN9-201ENST00000306726 H1FXQ92522 213 aaKnown RBP12.17□□□□□ -0.46
PTPN9-201ENST00000306726 SFRP2Q96HF1 295 aa12.17□□□□□ -0.46
PTPN9-201ENST00000306726 SSBP4Q9BWG4 385 aaPredicted RBP12.17□□□□□ -0.46
PTPN9-201ENST00000306726 PRDM14Q9GZV8 571 aa12.17□□□□□ -0.46
PTPN9-201ENST00000306726 IGLV3-32A0A0A0MS00 114 aa12.16□□□□□ -0.46
PTPN9-201ENST00000306726 IGHV3-72A0A0B4J1Y9 119 aa12.16□□□□□ -0.46
PTPN9-201ENST00000306726 FOXA3P55318 350 aaPredicted RBP12.16□□□□□ -0.46
PTPN9-201ENST00000306726 TPPP2P59282 170 aa12.16□□□□□ -0.46
PTPN9-201ENST00000306726 PMCHL1Q16048 86 aa12.16□□□□□ -0.46
PTPN9-201ENST00000306726 OPN3Q9H1Y3 402 aaPredicted RBP12.16□□□□□ -0.46
PTPN9-201ENST00000306726 DIRC3C9JPN6 131 aa12.16□□□□□ -0.46
PTPN9-201ENST00000306726 WDR86Q86TI4 376 aa12.16□□□□□ -0.46
PTPN9-201ENST00000306726 TRGV5A0A0B4J1U4 118 aa12.16□□□□□ -0.46
PTPN9-201ENST00000306726 OR5B21A6NL26 309 aa12.16□□□□□ -0.46
PTPN9-201ENST00000306726 M0R1B8 84 aa12.16□□□□□ -0.46
PTPN9-201ENST00000306726 REG1AP05451 166 aa12.16□□□□□ -0.46
PTPN9-201ENST00000306726 SRSF6Q13247 344 aaKnown RBP12.16□□□□□ -0.46
PTPN9-201ENST00000306726 STARD4Q96DR4 205 aa12.16□□□□□ -0.46
PTPN9-201ENST00000306726 CIB3Q96Q77 187 aaPredicted RBP12.16□□□□□ -0.46
PTPN9-201ENST00000306726 SSUH2Q9Y2M2 353 aa12.16□□□□□ -0.46
PTPN9-201ENST00000306726 TRBV24-1A0A075B6N3 115 aa12.15□□□□□ -0.46
PTPN9-201ENST00000306726 TIMP3P35625 211 aa12.15□□□□□ -0.46
PTPN9-201ENST00000306726 GNG4P50150 75 aa12.15□□□□□ -0.46
PTPN9-201ENST00000306726 DAZAP2Q15038 168 aaPredicted RBP12.15□□□□□ -0.46
PTPN9-201ENST00000306726 MOGAT3Q86VF5 341 aa12.15□□□□□ -0.46
PTPN9-201ENST00000306726 KLF14Q8TD94 323 aaPredicted RBP12.15□□□□□ -0.46
PTPN9-201ENST00000306726 ARL2-SNX15V9GYD0 113 aa12.15□□□□□ -0.46
PTPN9-201ENST00000306726 SRIP30626 198 aa12.15□□□□□ -0.46
PTPN9-201ENST00000306726 LINC01551Q86U37 167 aa12.15□□□□□ -0.46
PTPN9-201ENST00000306726 BORCS7Q96B45 105 aa12.15□□□□□ -0.46
PTPN9-201ENST00000306726 POLR3KQ9Y2Y1 108 aaPredicted RBP12.15□□□□□ -0.46
PTPN9-201ENST00000306726 MPC1Q9Y5U8 109 aa12.15□□□□□ -0.46
PTPN9-201ENST00000306726 KIAA1549Q9HCM3 1950 aa12.15□□□□□ -0.46
PTPN9-201ENST00000306726 M0QZ24 198 aa12.15□□□□□ -0.46
PTPN9-201ENST00000306726 SIAH2O43255 324 aa12.15□□□□□ -0.46
PTPN9-201ENST00000306726 IGFBP2P18065 325 aa12.15□□□□□ -0.46
PTPN9-201ENST00000306726 RAB31Q13636 194 aa12.15□□□□□ -0.46
PTPN9-201ENST00000306726 TP73-AS1Q9UF72 201 aa12.15□□□□□ -0.46
PTPN9-201ENST00000306726 KLK10O43240 276 aa12.14□□□□□ -0.47
PTPN9-201ENST00000306726 TIGITQ495A1 244 aa12.14□□□□□ -0.47
PTPN9-201ENST00000306726 ZNF586Q9NXT0 402 aa12.14□□□□□ -0.47
PTPN9-201ENST00000306726 UCP2P55851 309 aa12.14□□□□□ -0.47
PTPN9-201ENST00000306726 MAJINQ3KP22 176 aa12.14□□□□□ -0.47
PTPN9-201ENST00000306726 UTF1Q5T230 341 aa12.14□□□□□ -0.47
PTPN9-201ENST00000306726 MIR17HGQ75NE6 70 aa12.14□□□□□ -0.47
PTPN9-201ENST00000306726 OR2D3Q8NGH3 330 aa12.14□□□□□ -0.47
PTPN9-201ENST00000306726 TMEM11P17152 192 aa12.14□□□□□ -0.47
PTPN9-201ENST00000306726 HNRNPA3P51991 378 aaKnown RBP12.14□□□□□ -0.47
PTPN9-201ENST00000306726 KRTCAP3Q53RY4 240 aa12.14□□□□□ -0.47
PTPN9-201ENST00000306726 ARSJQ5FYB0 599 aaPredicted RBP12.14□□□□□ -0.47
PTPN9-201ENST00000306726 RIPPLY2Q5TAB7 128 aa12.14□□□□□ -0.47
PTPN9-201ENST00000306726 RNF138Q8WVD3 245 aa12.14□□□□□ -0.47
PTPN9-201ENST00000306726 TMEM68Q96MH6 324 aa12.14□□□□□ -0.47
PTPN9-201ENST00000306726 DIRC2Q96SL1 478 aa12.14□□□□□ -0.47
PTPN9-201ENST00000306726 HSBP1O75506 76 aa12.13□□□□□ -0.47
PTPN9-201ENST00000306726 ORM2P19652 201 aa12.13□□□□□ -0.47
PTPN9-201ENST00000306726 OR10J1P30954 320 aa12.13□□□□□ -0.47
PTPN9-201ENST00000306726 PCP4P48539 62 aa12.13□□□□□ -0.47
PTPN9-201ENST00000306726 TMPRSS3P57727 454 aa12.13□□□□□ -0.47
PTPN9-201ENST00000306726 FBXW9Q5XUX1 488 aa12.13□□□□□ -0.47
PTPN9-201ENST00000306726 TMEM170AQ8WVE7 144 aa12.13□□□□□ -0.47
PTPN9-201ENST00000306726 CBY3A6NI87 242 aa12.13□□□□□ -0.47
PTPN9-201ENST00000306726 VWA1Q6PCB0 445 aa12.13□□□□□ -0.47
PTPN9-201ENST00000306726 MBD3L1Q8WWY6 194 aa12.13□□□□□ -0.47
PTPN9-201ENST00000306726 SNRNP40Q96DI7 357 aaKnown RBP12.13□□□□□ -0.47
PTPN9-201ENST00000306726 MUC21A0A0G2JKD1 596 aa12.13□□□□□ -0.47
PTPN9-201ENST00000306726 MUC21A0A140T8X8 626 aa12.13□□□□□ -0.47
PTPN9-201ENST00000306726 NUTF2P61970 127 aaKnown RBP12.13□□□□□ -0.47
PTPN9-201ENST00000306726 RANP62826 216 aaKnown RBP12.13□□□□□ -0.47
PTPN9-201ENST00000306726 MUC21Q5SSG8 566 aa12.13□□□□□ -0.47
PTPN9-201ENST00000306726 SLC24A4Q8NFF2 622 aa12.13□□□□□ -0.47
PTPN9-201ENST00000306726 MRPL37Q9BZE1 423 aaKnown RBP12.13□□□□□ -0.47
PTPN9-201ENST00000306726 TRAV5A0A0B4J249 113 aa12.12□□□□□ -0.47
PTPN9-201ENST00000306726 HELTA6NFD8 242 aa12.12□□□□□ -0.47
PTPN9-201ENST00000306726 IL18BPO95998 194 aa12.12□□□□□ -0.47
PTPN9-201ENST00000306726 RPLP1P05386 114 aaKnown RBP12.12□□□□□ -0.47
PTPN9-201ENST00000306726 CLDN18P56856 261 aa12.12□□□□□ -0.47
PTPN9-201ENST00000306726 MMD2Q8IY49 270 aa12.12□□□□□ -0.47
PTPN9-201ENST00000306726 ZNF645Q8N7E2 425 aa12.12□□□□□ -0.47
PTPN9-201ENST00000306726 ANAPC16Q96DE5 110 aa12.12□□□□□ -0.47
PTPN9-201ENST00000306726 TECTBQ96PL2 329 aa12.12□□□□□ -0.47
PTPN9-201ENST00000306726 SLC35D1Q9NTN3 355 aa12.12□□□□□ -0.47
PTPN9-201ENST00000306726 KLRC4-KLRK1H3BQV0 150 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 75.3 ms