RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 TNFSF10P50591 281 aa8.48□□□□□ -1.05
COL6A3-201ENST00000295550 RPL31P62899 125 aaKnown RBP8.48□□□□□ -1.05
COL6A3-201ENST00000295550 FSCN3Q9NQT6 498 aa8.48□□□□□ -1.05
COL6A3-201ENST00000295550 APOMO95445 188 aa8.48□□□□□ -1.05
COL6A3-201ENST00000295550 LOXL3P58215 753 aa8.48□□□□□ -1.05
COL6A3-201ENST00000295550 RND3P61587 244 aa8.48□□□□□ -1.05
COL6A3-201ENST00000295550 AICDAQ9GZX7 198 aa8.48□□□□□ -1.05
COL6A3-201ENST00000295550 G6PC2Q9NQR9 355 aa8.48□□□□□ -1.05
COL6A3-201ENST00000295550 KIAA1549LQ6ZVL6 1849 aa8.48□□□□□ -1.05
COL6A3-201ENST00000295550 TMEM250H0YL14 139 aa8.48□□□□□ -1.05
COL6A3-201ENST00000295550 SLC17A3O00476 420 aa8.48□□□□□ -1.05
COL6A3-201ENST00000295550 TMEM170BQ5T4T1 132 aa8.48□□□□□ -1.05
COL6A3-201ENST00000295550 STPG3Q8N7X2 389 aa8.48□□□□□ -1.05
COL6A3-201ENST00000295550 WNT9BO14905 357 aa8.47□□□□□ -1.05
COL6A3-201ENST00000295550 ZNF106Q9H2Y7 1883 aaKnown RBP8.47□□□□□ -1.05
COL6A3-201ENST00000295550 TMEM229AB2RXF0 380 aa8.47□□□□□ -1.05
COL6A3-201ENST00000295550 LINC01590Q5TEZ4 76 aa8.47□□□□□ -1.05
COL6A3-201ENST00000295550 TAF15Q92804 592 aaKnown RBP eCLIP8.47□□□□□ -1.05
COL6A3-201ENST00000295550 SPSB4Q96A44 273 aa8.47□□□□□ -1.05
COL6A3-201ENST00000295550 SSTR5P35346 364 aa8.47□□□□□ -1.05
COL6A3-201ENST00000295550 RPL8P62917 257 aaKnown RBP8.47□□□□□ -1.05
COL6A3-201ENST00000295550 SPINK14Q6IE38 97 aa8.47□□□□□ -1.05
COL6A3-201ENST00000295550 SHISA3A0PJX4 238 aa8.47□□□□□ -1.05
COL6A3-201ENST00000295550 RAB9AP51151 201 aa8.47□□□□□ -1.05
COL6A3-201ENST00000295550 RPS11P62280 158 aaKnown RBP eCLIP8.47□□□□□ -1.05
COL6A3-201ENST00000295550 TRAV12-3A0A0B4J271 114 aa8.47□□□□□ -1.05
COL6A3-201ENST00000295550 C18orf15Q96N68 181 aa8.47□□□□□ -1.05
COL6A3-201ENST00000295550 CFDP00746 253 aaPredicted RBP8.47□□□□□ -1.05
COL6A3-201ENST00000295550 HCP5Q6MZN7 132 aa8.47□□□□□ -1.05
COL6A3-201ENST00000295550 SRSF12Q8WXF0 261 aaKnown RBP8.47□□□□□ -1.05
COL6A3-201ENST00000295550 ZP1P60852 638 aa8.47□□□□□ -1.05
COL6A3-201ENST00000295550 RNF7Q9UBF6 113 aa8.47□□□□□ -1.05
COL6A3-201ENST00000295550 IGHV4-39P01824 125 aa8.47□□□□□ -1.05
COL6A3-201ENST00000295550 ADRA2AP08913 450 aa8.47□□□□□ -1.05
COL6A3-201ENST00000295550 AMELYQ99218 206 aa8.47□□□□□ -1.05
COL6A3-201ENST00000295550 NUP210Q8TEM1 1887 aaPredicted RBP8.46□□□□□ -1.05
COL6A3-201ENST00000295550 IGHV5-10-1A0A0J9YXX1 117 aa8.46□□□□□ -1.05
COL6A3-201ENST00000295550 GPX1P07203 203 aa8.46□□□□□ -1.05
COL6A3-201ENST00000295550 FTH1P19P0C7X4 201 aa8.46□□□□□ -1.05
COL6A3-201ENST00000295550 FAM27BQ5VT28 67 aa8.46□□□□□ -1.05
COL6A3-201ENST00000295550 OR2K2Q8NGT1 345 aa8.46□□□□□ -1.05
COL6A3-201ENST00000295550 C9orf172C9J069 976 aa8.46□□□□□ -1.05
COL6A3-201ENST00000295550 J3QRE1 110 aa8.46□□□□□ -1.05
COL6A3-201ENST00000295550 BTCP35070 178 aa8.46□□□□□ -1.05
COL6A3-201ENST00000295550 SIGMAR1Q99720 223 aa8.46□□□□□ -1.05
COL6A3-201ENST00000295550 DIRC2Q96SL1 478 aa8.46□□□□□ -1.06
COL6A3-201ENST00000295550 TRBV20OR9-2A0A075B6H5 130 aa8.46□□□□□ -1.06
COL6A3-201ENST00000295550 H3BRM9 83 aa8.46□□□□□ -1.06
COL6A3-201ENST00000295550 SNAI2O43623 268 aa8.46□□□□□ -1.06
COL6A3-201ENST00000295550 TFPI2P48307 235 aa8.46□□□□□ -1.06
COL6A3-201ENST00000295550 TGIF1Q15583 401 aa8.46□□□□□ -1.06
COL6A3-201ENST00000295550 ZNF658BQ4V348 819 aaPredicted RBP8.46□□□□□ -1.06
COL6A3-201ENST00000295550 R4GN57 208 aa8.46□□□□□ -1.06
COL6A3-201ENST00000295550 C17orf51A8MQB3 221 aa8.46□□□□□ -1.06
COL6A3-201ENST00000295550 KLK10O43240 276 aa8.46□□□□□ -1.06
COL6A3-201ENST00000295550 LINC00114Q6XXX2 140 aa8.46□□□□□ -1.06
COL6A3-201ENST00000295550 PRF1P14222 555 aa8.46□□□□□ -1.06
COL6A3-201ENST00000295550 OR5AN1Q8NGI8 311 aa8.46□□□□□ -1.06
COL6A3-201ENST00000295550 OR52M1Q8NGK5 317 aa8.46□□□□□ -1.06
COL6A3-201ENST00000295550 C5orf66Q9H5L9 145 aa8.46□□□□□ -1.06
COL6A3-201ENST00000295550 LHFPL6Q9Y693 200 aa8.46□□□□□ -1.06
COL6A3-201ENST00000295550 NDUFA3O95167 84 aa8.45□□□□□ -1.06
COL6A3-201ENST00000295550 TNFRSF9Q07011 255 aa8.45□□□□□ -1.06
COL6A3-201ENST00000295550 ZFAND6Q6FIF0 208 aa8.45□□□□□ -1.06
COL6A3-201ENST00000295550 PRRC2AP48634 2157 aaKnown RBP8.45□□□□□ -1.06
COL6A3-201ENST00000295550 TMEM101Q96IK0 257 aa8.45□□□□□ -1.06
COL6A3-201ENST00000295550 A0A1W2PS18 150 aa8.45□□□□□ -1.06
COL6A3-201ENST00000295550 NPFFO15130 113 aa8.45□□□□□ -1.06
COL6A3-201ENST00000295550 PRDM14Q9GZV8 571 aa8.45□□□□□ -1.06
COL6A3-201ENST00000295550 DUSP15Q9H1R2 295 aaPredicted RBP8.45□□□□□ -1.06
COL6A3-201ENST00000295550 TBX6O95947 436 aaPredicted RBP8.45□□□□□ -1.06
COL6A3-201ENST00000295550 P2RY6Q15077 328 aa8.45□□□□□ -1.06
COL6A3-201ENST00000295550 Q5BKY6 102 aa8.45□□□□□ -1.06
COL6A3-201ENST00000295550 DNASE2BQ8WZ79 361 aa8.45□□□□□ -1.06
COL6A3-201ENST00000295550 HEXA-AS1Q9H8Q6 139 aa8.45□□□□□ -1.06
COL6A3-201ENST00000295550 HILPDAQ9Y5L2 63 aa8.45□□□□□ -1.06
COL6A3-201ENST00000295550 DENND4CQ5VZ89 1909 aa8.45□□□□□ -1.06
COL6A3-201ENST00000295550 MARCH11A6NNE9 402 aa8.45□□□□□ -1.06
COL6A3-201ENST00000295550 DDB2Q92466 427 aa8.45□□□□□ -1.06
COL6A3-201ENST00000295550 PGPEP1LA6NFU8 196 aa8.45□□□□□ -1.06
COL6A3-201ENST00000295550 CLDN14O95500 239 aa8.45□□□□□ -1.06
COL6A3-201ENST00000295550 CCL3P10147 92 aa8.45□□□□□ -1.06
COL6A3-201ENST00000295550 MDP1Q86V88 176 aa8.45□□□□□ -1.06
COL6A3-201ENST00000295550 GPR132Q9UNW8 380 aa8.45□□□□□ -1.06
COL6A3-201ENST00000295550 GOLT1AQ6ZVE7 132 aa8.45□□□□□ -1.06
COL6A3-201ENST00000295550 FNDC4Q9H6D8 234 aaPredicted RBP8.45□□□□□ -1.06
COL6A3-201ENST00000295550 IGHV3OR16-12A0A075B7B8 117 aa8.45□□□□□ -1.06
COL6A3-201ENST00000295550 A8MXK9 166 aa8.45□□□□□ -1.06
COL6A3-201ENST00000295550 TSPOP30536 169 aa8.45□□□□□ -1.06
COL6A3-201ENST00000295550 LDLRAD2Q5SZI1 272 aa8.45□□□□□ -1.06
COL6A3-201ENST00000295550 ZNF501Q96CX3 271 aaPredicted RBP8.45□□□□□ -1.06
COL6A3-201ENST00000295550 LCN2P80188 198 aa8.45□□□□□ -1.06
COL6A3-201ENST00000295550 PKIBQ9C010 78 aa8.45□□□□□ -1.06
COL6A3-201ENST00000295550 ZNF815PA8K554 130 aa8.44□□□□□ -1.06
COL6A3-201ENST00000295550 AGFG2O95081 481 aa8.44□□□□□ -1.06
COL6A3-201ENST00000295550 SRSF4Q08170 494 aaKnown RBP8.44□□□□□ -1.06
COL6A3-201ENST00000295550 UCN2Q96RP3 112 aa8.44□□□□□ -1.06
COL6A3-201ENST00000295550 TRAV21A0A0B4J279 112 aa8.44□□□□□ -1.06
COL6A3-201ENST00000295550 FAM90A10PA6NDY2 464 aa8.44□□□□□ -1.06
COL6A3-201ENST00000295550 FAM90A18PA6NE21 464 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms