RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 ERVK11-1P61568 191 aa8.57□□□□□ -1.04
UPF3B-201ENST00000276201 CATR1Q13166 79 aa8.57□□□□□ -1.04
UPF3B-201ENST00000276201 PRSS8Q16651 343 aa8.57□□□□□ -1.04
UPF3B-201ENST00000276201 OR4B1Q8NGF8 309 aa8.57□□□□□ -1.04
UPF3B-201ENST00000276201 C11orf52Q96A22 123 aa8.57□□□□□ -1.04
UPF3B-201ENST00000276201 LPAR2Q9HBW0 351 aa8.57□□□□□ -1.04
UPF3B-201ENST00000276201 IL36BQ9NZH7 164 aa8.57□□□□□ -1.04
UPF3B-201ENST00000276201 JKAMPQ9P055 326 aa8.57□□□□□ -1.04
UPF3B-201ENST00000276201 PKDREJQ9NTG1 2253 aa8.57□□□□□ -1.04
UPF3B-201ENST00000276201 NUPR1O60356 82 aa8.57□□□□□ -1.04
UPF3B-201ENST00000276201 IRF2P14316 349 aa8.57□□□□□ -1.04
UPF3B-201ENST00000276201 OPRK1P41145 380 aa8.57□□□□□ -1.04
UPF3B-201ENST00000276201 KIR2DL2P43627 348 aaPredicted RBP8.57□□□□□ -1.04
UPF3B-201ENST00000276201 RPL29P47914 159 aaKnown RBP8.57□□□□□ -1.04
UPF3B-201ENST00000276201 LINC00310P59036 64 aa8.57□□□□□ -1.04
UPF3B-201ENST00000276201 ARF1P84077 181 aaKnown RBP8.57□□□□□ -1.04
UPF3B-201ENST00000276201 COL5A1-AS1Q5SY13 56 aa8.57□□□□□ -1.04
UPF3B-201ENST00000276201 VWA1Q6PCB0 445 aa8.57□□□□□ -1.04
UPF3B-201ENST00000276201 ZNF705AQ6ZN79 300 aaPredicted RBP8.57□□□□□ -1.04
UPF3B-201ENST00000276201 CNEP1R1Q8N9A8 125 aa8.57□□□□□ -1.04
UPF3B-201ENST00000276201 OR10G8Q8NGN5 311 aa8.57□□□□□ -1.04
UPF3B-201ENST00000276201 OR1K1Q8NGR3 316 aa8.57□□□□□ -1.04
UPF3B-201ENST00000276201 SGMS2Q8NHU3 365 aa8.57□□□□□ -1.04
UPF3B-201ENST00000276201 DTD1Q8TEA8 209 aa8.57□□□□□ -1.04
UPF3B-201ENST00000276201 POM121L2Q96KW2 1035 aa8.57□□□□□ -1.04
UPF3B-201ENST00000276201 PRRG4Q9BZD6 226 aa8.57□□□□□ -1.04
UPF3B-201ENST00000276201 OR2J1Q9GZK6 312 aa8.57□□□□□ -1.04
UPF3B-201ENST00000276201 NBPF19A0A087WUL8 3843 aa8.57□□□□□ -1.04
UPF3B-201ENST00000276201 CRYBG3Q68DQ2 2970 aa8.56□□□□□ -1.04
UPF3B-201ENST00000276201 ODAMA1E959 279 aa8.56□□□□□ -1.04
UPF3B-201ENST00000276201 COX6B1P14854 86 aa8.56□□□□□ -1.04
UPF3B-201ENST00000276201 FBXL19-AS1Q494R0 122 aa8.56□□□□□ -1.04
UPF3B-201ENST00000276201 PDLIM3Q53GG5 364 aaPredicted RBP8.56□□□□□ -1.04
UPF3B-201ENST00000276201 STARD4Q96DR4 205 aa8.56□□□□□ -1.04
UPF3B-201ENST00000276201 MSL2Q9HCI7 577 aa8.56□□□□□ -1.04
UPF3B-201ENST00000276201 CELSR2Q9HCU4 2923 aa8.56□□□□□ -1.04
UPF3B-201ENST00000276201 HSPB6O14558 160 aa8.56□□□□□ -1.04
UPF3B-201ENST00000276201 MT-ND6P03923 174 aa8.56□□□□□ -1.04
UPF3B-201ENST00000276201 OR10J4P0C629 311 aa8.56□□□□□ -1.04
UPF3B-201ENST00000276201 STAG3L2P0CL84 134 aa8.56□□□□□ -1.04
UPF3B-201ENST00000276201 STAG3L3P0CL85 134 aa8.56□□□□□ -1.04
UPF3B-201ENST00000276201 KITLGP21583 273 aa8.56□□□□□ -1.04
UPF3B-201ENST00000276201 COMPP49747 757 aaPredicted RBP8.56□□□□□ -1.04
UPF3B-201ENST00000276201 ZNF146Q15072 292 aa8.56□□□□□ -1.04
UPF3B-201ENST00000276201 TOMM20LQ6UXN7 152 aa8.56□□□□□ -1.04
UPF3B-201ENST00000276201 BATF2Q8N1L9 274 aa8.56□□□□□ -1.04
UPF3B-201ENST00000276201 OR1L1Q8NH94 360 aa8.56□□□□□ -1.04
UPF3B-201ENST00000276201 ABHD3Q8WU67 409 aa8.56□□□□□ -1.04
UPF3B-201ENST00000276201 SPOCK3Q9BQ16 436 aa8.56□□□□□ -1.04
UPF3B-201ENST00000276201 VAMP8Q9BV40 100 aa8.56□□□□□ -1.04
UPF3B-201ENST00000276201 KCNS2Q9ULS6 477 aa8.56□□□□□ -1.04
UPF3B-201ENST00000276201 ZFP30Q9Y2G7 519 aa8.56□□□□□ -1.04
UPF3B-201ENST00000276201 CDIPTO14735 213 aa8.55□□□□□ -1.04
UPF3B-201ENST00000276201 NXPH2O95156 264 aa8.55□□□□□ -1.04
UPF3B-201ENST00000276201 CGAP01215 116 aa8.55□□□□□ -1.04
UPF3B-201ENST00000276201 AREGP15514 252 aa8.55□□□□□ -1.04
UPF3B-201ENST00000276201 CRISP2P16562 243 aa8.55□□□□□ -1.04
UPF3B-201ENST00000276201 CTRLP40313 264 aa8.55□□□□□ -1.04
UPF3B-201ENST00000276201 LGALS4P56470 323 aa8.55□□□□□ -1.04
UPF3B-201ENST00000276201 RPL19P84098 196 aaKnown RBP8.55□□□□□ -1.04
UPF3B-201ENST00000276201 ANKRD39Q53RE8 183 aa8.55□□□□□ -1.04
UPF3B-201ENST00000276201 ARSJQ5FYB0 599 aaPredicted RBP8.55□□□□□ -1.04
UPF3B-201ENST00000276201 FAM214BQ7L5A3 538 aa8.55□□□□□ -1.04
UPF3B-201ENST00000276201 OR5AU1Q8NGC0 362 aa8.55□□□□□ -1.04
UPF3B-201ENST00000276201 RNASE6Q93091 150 aaKnown RBP8.55□□□□□ -1.04
UPF3B-201ENST00000276201 SDSLQ96GA7 329 aa8.55□□□□□ -1.04
UPF3B-201ENST00000276201 RNF2Q99496 336 aa8.55□□□□□ -1.04
UPF3B-201ENST00000276201 GNB1LQ9BYB4 327 aa8.55□□□□□ -1.04
UPF3B-201ENST00000276201 SLC45A2Q9UMX9 530 aa8.55□□□□□ -1.04
UPF3B-201ENST00000276201 ANKHD1Q8IWZ3 2542 aaKnown RBP8.55□□□□□ -1.04
UPF3B-201ENST00000276201 C15orf62A8K5M9 175 aa8.55□□□□□ -1.04
UPF3B-201ENST00000276201 RBFOX2O43251 390 aaKnown RBP eCLIP8.55□□□□□ -1.04
UPF3B-201ENST00000276201 MRPL33O75394 65 aaKnown RBP8.55□□□□□ -1.04
UPF3B-201ENST00000276201 NDUFB4O95168 129 aa8.55□□□□□ -1.04
UPF3B-201ENST00000276201 CXorf1O96002 111 aa8.55□□□□□ -1.04
UPF3B-201ENST00000276201 NPSP0C0P6 89 aa8.55□□□□□ -1.04
UPF3B-201ENST00000276201 RPP30P78346 268 aaKnown RBP8.55□□□□□ -1.04
UPF3B-201ENST00000276201 CLEC12BQ2HXU8 276 aa8.55□□□□□ -1.04
UPF3B-201ENST00000276201 ZNF718Q3SXZ3 478 aa8.55□□□□□ -1.04
UPF3B-201ENST00000276201 OR10J3Q5JRS4 329 aa8.55□□□□□ -1.04
UPF3B-201ENST00000276201 IL1F10Q8WWZ1 152 aa8.55□□□□□ -1.04
UPF3B-201ENST00000276201 QTRT1Q9BXR0 403 aaKnown RBP8.55□□□□□ -1.04
UPF3B-201ENST00000276201 OPN3Q9H1Y3 402 aaPredicted RBP8.55□□□□□ -1.04
UPF3B-201ENST00000276201 TRAPPC2LQ9UL33 140 aa8.55□□□□□ -1.04
UPF3B-201ENST00000276201 POLDIP2Q9Y2S7 368 aa8.55□□□□□ -1.04
UPF3B-201ENST00000276201 TRGV10A0A0A0MS01 117 aa8.54□□□□□ -1.04
UPF3B-201ENST00000276201 C5orf49A4QMS7 147 aa8.54□□□□□ -1.04
UPF3B-201ENST00000276201 A8MXE2 369 aa8.54□□□□□ -1.04
UPF3B-201ENST00000276201 ATP5G3P48201 142 aa8.54□□□□□ -1.04
UPF3B-201ENST00000276201 WDR73Q6P4I2 378 aa8.54□□□□□ -1.04
UPF3B-201ENST00000276201 MCEMP1Q8IX19 187 aa8.54□□□□□ -1.04
UPF3B-201ENST00000276201 OR52E5Q8NH55 327 aa8.54□□□□□ -1.04
UPF3B-201ENST00000276201 RTL8AQ9BWD3 113 aa8.54□□□□□ -1.04
UPF3B-201ENST00000276201 CLN8Q9UBY8 286 aa8.54□□□□□ -1.04
UPF3B-201ENST00000276201 RBM7Q9Y580 266 aaKnown RBP8.54□□□□□ -1.04
UPF3B-201ENST00000276201 TRAV39A0A0B4J263 110 aa8.54□□□□□ -1.04
UPF3B-201ENST00000276201 A0A1W2PR80 420 aa8.54□□□□□ -1.04
UPF3B-201ENST00000276201 HMGB3O15347 200 aaKnown RBP8.54□□□□□ -1.04
UPF3B-201ENST00000276201 OR2H2O95918 312 aa8.54□□□□□ -1.04
UPF3B-201ENST00000276201 ZNF16P17020 682 aaPredicted RBP8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms