RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 RNASEK-C17orf49H0YIS7 233 aa13.3□□□□□ -0.28
USP4-201ENST00000265560 UPK2O00526 184 aa13.3□□□□□ -0.28
USP4-201ENST00000265560 PDLIM4P50479 330 aa13.3□□□□□ -0.28
USP4-201ENST00000265560 DYNAPQ8N1N2 210 aa13.3□□□□□ -0.28
USP4-201ENST00000265560 ACANP16112 2415 aa13.3□□□□□ -0.28
USP4-201ENST00000265560 TIMM23O14925 209 aa13.3□□□□□ -0.28
USP4-201ENST00000265560 FGF16O43320 207 aa13.3□□□□□ -0.28
USP4-201ENST00000265560 TOR2AQ5JU69 321 aa13.3□□□□□ -0.28
USP4-201ENST00000265560 FAM213BQ8TBF2 198 aa13.3□□□□□ -0.28
USP4-201ENST00000265560 ARV1Q9H2C2 271 aa13.3□□□□□ -0.28
USP4-201ENST00000265560 VSIRQ9H7M9 311 aa13.3□□□□□ -0.28
USP4-201ENST00000265560 TMEM14BQ9NUH8 114 aa13.3□□□□□ -0.28
USP4-201ENST00000265560 TEX50A0A1B0GTY4 177 aa13.3□□□□□ -0.28
USP4-201ENST00000265560 SMCO3A2RU48 225 aa13.3□□□□□ -0.28
USP4-201ENST00000265560 MFSD2BA6NFX1 497 aa13.3□□□□□ -0.28
USP4-201ENST00000265560 IL3RAP26951 378 aa13.3□□□□□ -0.28
USP4-201ENST00000265560 HSPE1P61604 102 aaKnown RBP13.3□□□□□ -0.28
USP4-201ENST00000265560 C19orf35Q6ZS72 473 aa13.3□□□□□ -0.28
USP4-201ENST00000265560 TNFRSF14Q92956 283 aa13.3□□□□□ -0.28
USP4-201ENST00000265560 NARS2Q96I59 477 aaKnown RBP13.3□□□□□ -0.28
USP4-201ENST00000265560 PMS2P5A8MQ11 134 aa13.29□□□□□ -0.28
USP4-201ENST00000265560 IFNA4P05014 189 aa13.29□□□□□ -0.28
USP4-201ENST00000265560 REG1AP05451 166 aa13.29□□□□□ -0.28
USP4-201ENST00000265560 DEFA4P12838 97 aa13.29□□□□□ -0.28
USP4-201ENST00000265560 ZNF787Q6DD87 383 aa13.29□□□□□ -0.28
USP4-201ENST00000265560 EIF5AL1Q6IS14 154 aaKnown RBP13.29□□□□□ -0.28
USP4-201ENST00000265560 HIPK2Q9H2X6 1198 aa13.29□□□□□ -0.28
USP4-201ENST00000265560 ZNF430Q9H8G1 570 aaPredicted RBP13.29□□□□□ -0.28
USP4-201ENST00000265560 FAM96BQ9Y3D0 163 aa13.29□□□□□ -0.28
USP4-201ENST00000265560 KBTBD11O94819 623 aa13.29□□□□□ -0.28
USP4-201ENST00000265560 IFNA5P01569 189 aa13.29□□□□□ -0.28
USP4-201ENST00000265560 IGLV2-23P01705 113 aa13.29□□□□□ -0.28
USP4-201ENST00000265560 HTR1DP28221 377 aa13.29□□□□□ -0.28
USP4-201ENST00000265560 VDAC2P45880 294 aaPredicted RBP13.29□□□□□ -0.28
USP4-201ENST00000265560 CAMLGP49069 296 aa13.29□□□□□ -0.28
USP4-201ENST00000265560 SULT1A2P50226 295 aa13.29□□□□□ -0.28
USP4-201ENST00000265560 ZNF137PP52743 207 aa13.29□□□□□ -0.28
USP4-201ENST00000265560 GNB1P62873 340 aa13.29□□□□□ -0.28
USP4-201ENST00000265560 HBG1P69891 147 aa13.29□□□□□ -0.28
USP4-201ENST00000265560 HBG2P69892 147 aa13.29□□□□□ -0.28
USP4-201ENST00000265560 C8orf31Q8N9H6 132 aa13.29□□□□□ -0.28
USP4-201ENST00000265560 OR10P1Q8NGE3 313 aa13.29□□□□□ -0.28
USP4-201ENST00000265560 OSR1Q8TAX0 266 aaPredicted RBP13.29□□□□□ -0.28
USP4-201ENST00000265560 AUP1Q9Y679 476 aa13.29□□□□□ -0.28
USP4-201ENST00000265560 MXRA5Q9NR99 2828 aa13.29□□□□□ -0.28
USP4-201ENST00000265560 IGHV3-48P01763 117 aa13.28□□□□□ -0.28
USP4-201ENST00000265560 PRTN3P24158 256 aa13.28□□□□□ -0.28
USP4-201ENST00000265560 ELLP55199 621 aaPredicted RBP13.28□□□□□ -0.28
USP4-201ENST00000265560 MLANAQ16655 118 aa13.28□□□□□ -0.28
USP4-201ENST00000265560 LINC00052Q96N35 136 aa13.28□□□□□ -0.28
USP4-201ENST00000265560 TAS2R30P59541 319 aa13.28□□□□□ -0.28
USP4-201ENST00000265560 TMEM177Q53S58 311 aa13.28□□□□□ -0.28
USP4-201ENST00000265560 DHRS7BQ6IAN0 325 aaPredicted RBP13.28□□□□□ -0.28
USP4-201ENST00000265560 BEND2Q8NDZ0 799 aa13.28□□□□□ -0.28
USP4-201ENST00000265560 TOX4O94842 621 aa13.28□□□□□ -0.28
USP4-201ENST00000265560 PAX2Q02962 417 aa13.28□□□□□ -0.28
USP4-201ENST00000265560 CLEC2AQ6UVW9 174 aa13.28□□□□□ -0.28
USP4-201ENST00000265560 ETV3LQ6ZN32 361 aa13.28□□□□□ -0.28
USP4-201ENST00000265560 ZNF429Q86V71 674 aa13.28□□□□□ -0.28
USP4-201ENST00000265560 PDPNQ86YL7 162 aa13.28□□□□□ -0.28
USP4-201ENST00000265560 STPG2Q8N412 459 aa13.28□□□□□ -0.28
USP4-201ENST00000265560 SCGB1C1Q8TD33 95 aa13.28□□□□□ -0.28
USP4-201ENST00000265560 COMMD5Q9GZQ3 224 aa13.28□□□□□ -0.28
USP4-201ENST00000265560 CACFD1Q9UGQ2 172 aa13.28□□□□□ -0.28
USP4-201ENST00000265560 FOXA2Q9Y261 457 aaPredicted RBP13.28□□□□□ -0.28
USP4-201ENST00000265560 ITPR3Q14573 2671 aa13.27□□□□□ -0.28
USP4-201ENST00000265560 CA2P00918 260 aa13.27□□□□□ -0.28
USP4-201ENST00000265560 SEC11BP0C7V7 166 aa13.27□□□□□ -0.28
USP4-201ENST00000265560 F2RL1P55085 397 aa13.27□□□□□ -0.28
USP4-201ENST00000265560 RPL8P62917 257 aaKnown RBP13.27□□□□□ -0.28
USP4-201ENST00000265560 HES1Q14469 280 aa13.27□□□□□ -0.28
USP4-201ENST00000265560 CIB3Q96Q77 187 aaPredicted RBP13.27□□□□□ -0.28
USP4-201ENST00000265560 TSNAXQ99598 290 aaKnown RBP13.27□□□□□ -0.28
USP4-201ENST00000265560 FBXL15Q9H469 300 aa13.27□□□□□ -0.28
USP4-201ENST00000265560 A0A1W2PPI3 338 aa13.27□□□□□ -0.29
USP4-201ENST00000265560 FCN1O00602 326 aa13.27□□□□□ -0.29
USP4-201ENST00000265560 C10orf105Q8TEF2 133 aa13.27□□□□□ -0.29
USP4-201ENST00000265560 PIMREGQ9BSJ6 248 aa13.27□□□□□ -0.29
USP4-201ENST00000265560 ENY2Q9NPA8 101 aa13.27□□□□□ -0.29
USP4-201ENST00000265560 DPM3Q9P2X0 92 aa13.27□□□□□ -0.29
USP4-201ENST00000265560 IGHV2-70DA0A0C4DH43 119 aa13.26□□□□□ -0.29
USP4-201ENST00000265560 LY6LH3BQJ8 138 aa13.26□□□□□ -0.29
USP4-201ENST00000265560 HMGB3O15347 200 aaKnown RBP13.26□□□□□ -0.29
USP4-201ENST00000265560 SCO1O75880 301 aa13.26□□□□□ -0.29
USP4-201ENST00000265560 OR8U8P0C7N1 319 aa13.26□□□□□ -0.29
USP4-201ENST00000265560 HOXB4P17483 251 aaPredicted RBP13.26□□□□□ -0.29
USP4-201ENST00000265560 POU2AF1Q16633 256 aa13.26□□□□□ -0.29
USP4-201ENST00000265560 PUSL1Q8N0Z8 303 aaKnown RBP13.26□□□□□ -0.29
USP4-201ENST00000265560 A0A1B0GW64 132 aa13.26□□□□□ -0.29
USP4-201ENST00000265560 DFFBO76075 338 aa13.26□□□□□ -0.29
USP4-201ENST00000265560 IL6RP08887 468 aaPredicted RBP13.26□□□□□ -0.29
USP4-201ENST00000265560 TPTE2P1Q5T6R2 138 aa13.26□□□□□ -0.29
USP4-201ENST00000265560 PLEKHA3Q9HB20 300 aa13.26□□□□□ -0.29
USP4-201ENST00000265560 PRNDQ9UKY0 176 aa13.26□□□□□ -0.29
USP4-201ENST00000265560 FLNAP21333 2647 aaKnown RBP13.26□□□□□ -0.29
USP4-201ENST00000265560 UNC79Q9P2D8 2635 aa13.26□□□□□ -0.29
USP4-201ENST00000265560 M0R1W7 72 aa13.26□□□□□ -0.29
USP4-201ENST00000265560 IGKV1D-33P01593 117 aa13.26□□□□□ -0.29
USP4-201ENST00000265560 IGKV1-33P01594 117 aa13.26□□□□□ -0.29
USP4-201ENST00000265560 RBP4P02753 201 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms