RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 STHQ8IWL8 128 aa11.97□□□□□ -0.49
CCDC88A-201ENST00000263630 ZNF784Q8NCA9 323 aaPredicted RBP11.97□□□□□ -0.49
CCDC88A-201ENST00000263630 FNDC4Q9H6D8 234 aaPredicted RBP11.97□□□□□ -0.49
CCDC88A-201ENST00000263630 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.97□□□□□ -0.49
CCDC88A-201ENST00000263630 HBDP02042 147 aa11.97□□□□□ -0.49
CCDC88A-201ENST00000263630 KLK13Q9UKR3 277 aa11.97□□□□□ -0.49
CCDC88A-201ENST00000263630 LRP10Q7Z4F1 713 aa11.97□□□□□ -0.49
CCDC88A-201ENST00000263630 IGKV3D-20A0A0C4DH25 116 aa11.97□□□□□ -0.49
CCDC88A-201ENST00000263630 MYOGP15173 224 aa11.97□□□□□ -0.49
CCDC88A-201ENST00000263630 NKG7Q16617 165 aa11.97□□□□□ -0.49
CCDC88A-201ENST00000263630 DCAF10Q5QP82 559 aa11.97□□□□□ -0.49
CCDC88A-201ENST00000263630 SIRT4Q9Y6E7 314 aaPredicted RBP11.97□□□□□ -0.49
CCDC88A-201ENST00000263630 PPIAL4CA0A0B4J2A2 164 aa11.97□□□□□ -0.49
CCDC88A-201ENST00000263630 TRGV3P03979 118 aa11.97□□□□□ -0.49
CCDC88A-201ENST00000263630 PPIAL4GP0DN37 164 aa11.97□□□□□ -0.49
CCDC88A-201ENST00000263630 FER1L6-AS1Q8NA97 138 aa11.97□□□□□ -0.49
CCDC88A-201ENST00000263630 THSD4Q6ZMP0 1018 aa11.97□□□□□ -0.49
CCDC88A-201ENST00000263630 OPN3Q9H1Y3 402 aaPredicted RBP11.97□□□□□ -0.49
CCDC88A-201ENST00000263630 GGTLC1Q9BX51 225 aa11.97□□□□□ -0.49
CCDC88A-201ENST00000263630 ABCA7Q8IZY2 2146 aa11.97□□□□□ -0.49
CCDC88A-201ENST00000263630 SEC11AP67812 179 aa11.96□□□□□ -0.49
CCDC88A-201ENST00000263630 SELENOHQ8IZQ5 122 aaKnown RBP11.96□□□□□ -0.49
CCDC88A-201ENST00000263630 NABP2Q9BQ15 211 aa11.96□□□□□ -0.49
CCDC88A-201ENST00000263630 NHP2Q9NX24 153 aaKnown RBP11.96□□□□□ -0.49
CCDC88A-201ENST00000263630 GPR132Q9UNW8 380 aa11.96□□□□□ -0.49
CCDC88A-201ENST00000263630 TRAV2A0A0B4J234 112 aa11.96□□□□□ -0.49
CCDC88A-201ENST00000263630 DANCRP0C864 163 aa11.96□□□□□ -0.49
CCDC88A-201ENST00000263630 LOXL4Q96JB6 756 aa11.96□□□□□ -0.49
CCDC88A-201ENST00000263630 WNK2Q9Y3S1 2297 aa11.96□□□□□ -0.49
CCDC88A-201ENST00000263630 C2CD4DB7Z1M9 353 aa11.96□□□□□ -0.49
CCDC88A-201ENST00000263630 LIFP15018 202 aa11.96□□□□□ -0.49
CCDC88A-201ENST00000263630 VSIG8P0DPA2 414 aa11.96□□□□□ -0.49
CCDC88A-201ENST00000263630 ZNF415Q09FC8 603 aa11.96□□□□□ -0.49
CCDC88A-201ENST00000263630 LURAP1LQ8IV03 231 aa11.96□□□□□ -0.49
CCDC88A-201ENST00000263630 HMGCLL1Q8TB92 370 aa11.96□□□□□ -0.49
CCDC88A-201ENST00000263630 MRAPQ8TCY5 172 aa11.96□□□□□ -0.49
CCDC88A-201ENST00000263630 TRAV8-1A0A0A6YYK1 113 aa11.96□□□□□ -0.49
CCDC88A-201ENST00000263630 ADARB2-AS1A8MUL3 147 aa11.96□□□□□ -0.49
CCDC88A-201ENST00000263630 OR2H2O95918 312 aa11.96□□□□□ -0.49
CCDC88A-201ENST00000263630 ERVK11-1P61568 191 aa11.96□□□□□ -0.49
CCDC88A-201ENST00000263630 ICAM4Q14773 271 aa11.96□□□□□ -0.49
CCDC88A-201ENST00000263630 CYP2G1PQ6ZSU1 146 aa11.96□□□□□ -0.49
CCDC88A-201ENST00000263630 FBLN7Q53RD9 439 aa11.96□□□□□ -0.5
CCDC88A-201ENST00000263630 POC1AQ8NBT0 407 aa11.96□□□□□ -0.5
CCDC88A-201ENST00000263630 WDR54Q9H977 334 aa11.96□□□□□ -0.5
CCDC88A-201ENST00000263630 ZNF729A6NN14 1252 aaPredicted RBP11.96□□□□□ -0.5
CCDC88A-201ENST00000263630 OR9G4Q8NGQ1 327 aa11.96□□□□□ -0.5
CCDC88A-201ENST00000263630 RPP21Q9H633 154 aaKnown RBP11.96□□□□□ -0.5
CCDC88A-201ENST00000263630 UBE2DNLQ8IWF7 75 aa11.96□□□□□ -0.5
CCDC88A-201ENST00000263630 LINC00518Q8N0U6 118 aa11.96□□□□□ -0.5
CCDC88A-201ENST00000263630 USP54Q70EL1 1684 aa11.95□□□□□ -0.5
CCDC88A-201ENST00000263630 HTN3P15516 51 aa11.95□□□□□ -0.5
CCDC88A-201ENST00000263630 Q6ZNB5 142 aa11.95□□□□□ -0.5
CCDC88A-201ENST00000263630 OR9G1Q8NH87 305 aa11.95□□□□□ -0.5
CCDC88A-201ENST00000263630 IGHV3-72A0A0B4J1Y9 119 aa11.95□□□□□ -0.5
CCDC88A-201ENST00000263630 AHRRA9YTQ3 701 aa11.95□□□□□ -0.5
CCDC88A-201ENST00000263630 REG1AP05451 166 aa11.95□□□□□ -0.5
CCDC88A-201ENST00000263630 LINC00158P58513 81 aa11.95□□□□□ -0.5
CCDC88A-201ENST00000263630 ASCL2Q99929 193 aa11.95□□□□□ -0.5
CCDC88A-201ENST00000263630 ABHD12Q8N2K0 398 aa11.95□□□□□ -0.5
CCDC88A-201ENST00000263630 ARPC1AQ92747 370 aa11.95□□□□□ -0.5
CCDC88A-201ENST00000263630 VKORC1Q9BQB6 163 aa11.95□□□□□ -0.5
CCDC88A-201ENST00000263630 SEPSECSQ9HD40 501 aaKnown RBP11.95□□□□□ -0.5
CCDC88A-201ENST00000263630 JPT1Q9UK76 154 aa11.95□□□□□ -0.5
CCDC88A-201ENST00000263630 NCKAP5O14513 1909 aa11.95□□□□□ -0.5
CCDC88A-201ENST00000263630 H0YL77 283 aa11.95□□□□□ -0.5
CCDC88A-201ENST00000263630 CDC42EP2O14613 210 aa11.95□□□□□ -0.5
CCDC88A-201ENST00000263630 GCHFRP30047 84 aa11.95□□□□□ -0.5
CCDC88A-201ENST00000263630 RIPPLY3P57055 190 aa11.95□□□□□ -0.5
CCDC88A-201ENST00000263630 SAXO1Q8IYX7 474 aa11.95□□□□□ -0.5
CCDC88A-201ENST00000263630 C1orf162Q8NEQ5 155 aaPredicted RBP11.95□□□□□ -0.5
CCDC88A-201ENST00000263630 HOXB1P14653 301 aaPredicted RBP11.95□□□□□ -0.5
CCDC88A-201ENST00000263630 UNC119Q13432 240 aa11.95□□□□□ -0.5
CCDC88A-201ENST00000263630 LY6EQ16553 131 aa11.95□□□□□ -0.5
CCDC88A-201ENST00000263630 SAMD5Q5TGI4 173 aa11.94□□□□□ -0.5
CCDC88A-201ENST00000263630 ARAP2Q8WZ64 1704 aa11.94□□□□□ -0.5
CCDC88A-201ENST00000263630 ATP5J2P56134 94 aa11.94□□□□□ -0.5
CCDC88A-201ENST00000263630 TMEM196Q5HYL7 178 aa11.94□□□□□ -0.5
CCDC88A-201ENST00000263630 WDYHV1Q96HA8 205 aa11.94□□□□□ -0.5
CCDC88A-201ENST00000263630 ZDBF2Q9HCK1 2354 aa11.94□□□□□ -0.5
CCDC88A-201ENST00000263630 MYF5P13349 255 aa11.94□□□□□ -0.5
CCDC88A-201ENST00000263630 DUTP33316 252 aaKnown RBP11.94□□□□□ -0.5
CCDC88A-201ENST00000263630 RND3P61587 244 aa11.94□□□□□ -0.5
CCDC88A-201ENST00000263630 SPTBN2O15020 2390 aa11.94□□□□□ -0.5
CCDC88A-201ENST00000263630 NRAPQ86VF7 1730 aa11.94□□□□□ -0.5
CCDC88A-201ENST00000263630 IL11P20809 199 aa11.94□□□□□ -0.5
CCDC88A-201ENST00000263630 NBEAP1P0C6P0 100 aa11.94□□□□□ -0.5
CCDC88A-201ENST00000263630 PPBPP02775 128 aa11.94□□□□□ -0.5
CCDC88A-201ENST00000263630 CHTOPQ9Y3Y2 248 aaKnown RBP11.94□□□□□ -0.5
CCDC88A-201ENST00000263630 PTP4A3O75365 173 aa11.93□□□□□ -0.5
CCDC88A-201ENST00000263630 PGLYRP1O75594 196 aaPredicted RBP11.93□□□□□ -0.5
CCDC88A-201ENST00000263630 ABHD17AQ96GS6 310 aa11.93□□□□□ -0.5
CCDC88A-201ENST00000263630 MRPL52Q86TS9 123 aaKnown RBP11.93□□□□□ -0.5
CCDC88A-201ENST00000263630 FAM27BQ5VT28 67 aa11.93□□□□□ -0.5
CCDC88A-201ENST00000263630 TEX45Q8NA69 505 aa11.93□□□□□ -0.5
CCDC88A-201ENST00000263630 IZUMO1RA6ND01 250 aa11.93□□□□□ -0.5
CCDC88A-201ENST00000263630 ZNHIT1O43257 154 aa11.93□□□□□ -0.5
CCDC88A-201ENST00000263630 SNAI2O43623 268 aa11.93□□□□□ -0.5
CCDC88A-201ENST00000263630 RIPPLY2Q5TAB7 128 aa11.93□□□□□ -0.5
CCDC88A-201ENST00000263630 TMEM167AQ8TBQ9 72 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms