RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 ABCA2Q9BZC7 2435 aa18.34■□□□□ 0.53
CDX1-201ENST00000231656 F8W036 122 aa18.34■□□□□ 0.53
CDX1-201ENST00000231656 IGKV1-16P04430 117 aa18.34■□□□□ 0.53
CDX1-201ENST00000231656 M6PRP20645 277 aa18.34■□□□□ 0.53
CDX1-201ENST00000231656 LFNGQ8NES3 379 aa18.34■□□□□ 0.53
CDX1-201ENST00000231656 OR10P1Q8NGE3 313 aa18.34■□□□□ 0.53
CDX1-201ENST00000231656 TAF15Q92804 592 aaKnown RBP eCLIP18.34■□□□□ 0.53
CDX1-201ENST00000231656 PINX1Q96BK5 328 aaKnown RBP18.34■□□□□ 0.53
CDX1-201ENST00000231656 MBD6Q96DN6 1003 aa18.34■□□□□ 0.53
CDX1-201ENST00000231656 SEC11CQ9BY50 192 aa18.34■□□□□ 0.53
CDX1-201ENST00000231656 TMEM14BQ9NUH8 114 aa18.34■□□□□ 0.53
CDX1-201ENST00000231656 TCF19Q9Y242 345 aa18.34■□□□□ 0.53
CDX1-201ENST00000231656 RPS16P62249 146 aaKnown RBP18.33■□□□□ 0.53
CDX1-201ENST00000231656 GUK1Q16774 197 aa18.33■□□□□ 0.53
CDX1-201ENST00000231656 VWC2Q2TAL6 325 aa18.33■□□□□ 0.53
CDX1-201ENST00000231656 ST6GALNAC6Q969X2 333 aa18.33■□□□□ 0.53
CDX1-201ENST00000231656 ZNF137PP52743 207 aa18.32■□□□□ 0.52
CDX1-201ENST00000231656 LCN2P80188 198 aa18.32■□□□□ 0.52
CDX1-201ENST00000231656 GUCA2BQ16661 112 aa18.32■□□□□ 0.52
CDX1-201ENST00000231656 OR5AN1Q8NGI8 311 aa18.32■□□□□ 0.52
CDX1-201ENST00000231656 OR10X1Q8NGY0 326 aa18.32■□□□□ 0.52
CDX1-201ENST00000231656 OR9G1Q8NH87 305 aa18.32■□□□□ 0.52
CDX1-201ENST00000231656 ONECUT1Q9UBC0 465 aa18.32■□□□□ 0.52
CDX1-201ENST00000231656 TIMM9Q9Y5J7 89 aa18.32■□□□□ 0.52
CDX1-201ENST00000231656 A0A1B0GW64 132 aa18.32■□□□□ 0.52
CDX1-201ENST00000231656 SRRM4A7MD48 611 aaKnown RBP18.32■□□□□ 0.52
CDX1-201ENST00000231656 H0YJW9 148 aa18.32■□□□□ 0.52
CDX1-201ENST00000231656 SCAF4O95104 1147 aaKnown RBP18.32■□□□□ 0.52
CDX1-201ENST00000231656 RBP4P02753 201 aa18.32■□□□□ 0.52
CDX1-201ENST00000231656 H2AFB1P0C5Y9 115 aa18.32■□□□□ 0.52
CDX1-201ENST00000231656 SFTA3P0C7M3 94 aa18.32■□□□□ 0.52
CDX1-201ENST00000231656 CENPVQ7Z7K6 275 aaPredicted RBP18.32■□□□□ 0.52
CDX1-201ENST00000231656 PUSL1Q8N0Z8 303 aaKnown RBP18.32■□□□□ 0.52
CDX1-201ENST00000231656 TMEM186Q96B77 213 aa18.32■□□□□ 0.52
CDX1-201ENST00000231656 CLCC1Q96S66 551 aa18.32■□□□□ 0.52
CDX1-201ENST00000231656 TMEM133Q9H2Q1 129 aa18.32■□□□□ 0.52
CDX1-201ENST00000231656 SLC25A16P16260 332 aa18.31■□□□□ 0.52
CDX1-201ENST00000231656 CCL20P78556 96 aa18.31■□□□□ 0.52
CDX1-201ENST00000231656 SERF2P84101 59 aa18.31■□□□□ 0.52
CDX1-201ENST00000231656 TAGLNQ01995 201 aaKnown RBP18.31■□□□□ 0.52
CDX1-201ENST00000231656 PAX2Q02962 417 aa18.31■□□□□ 0.52
CDX1-201ENST00000231656 BTN1A1Q13410 526 aa18.31■□□□□ 0.52
CDX1-201ENST00000231656 A0A1B0GV50 99 aa18.3■□□□□ 0.52
CDX1-201ENST00000231656 BTBD17A6NE02 478 aa18.3■□□□□ 0.52
CDX1-201ENST00000231656 UPK2O00526 184 aa18.3■□□□□ 0.52
CDX1-201ENST00000231656 APOA2P02652 100 aa18.3■□□□□ 0.52
CDX1-201ENST00000231656 HSPE1P61604 102 aaKnown RBP18.3■□□□□ 0.52
CDX1-201ENST00000231656 PEA15Q15121 130 aa18.3■□□□□ 0.52
CDX1-201ENST00000231656 ABHD12Q8N2K0 398 aa18.3■□□□□ 0.52
CDX1-201ENST00000231656 SVBPQ8N300 66 aa18.3■□□□□ 0.52
CDX1-201ENST00000231656 SUN5Q8TC36 379 aa18.3■□□□□ 0.52
CDX1-201ENST00000231656 NABP2Q9BQ15 211 aa18.3■□□□□ 0.52
CDX1-201ENST00000231656 HEYLQ9NQ87 328 aaPredicted RBP18.3■□□□□ 0.52
CDX1-201ENST00000231656 RPRMQ9NS64 109 aa18.3■□□□□ 0.52
CDX1-201ENST00000231656 ENSAO43768 121 aaKnown RBP18.3■□□□□ 0.52
CDX1-201ENST00000231656 FOXH1O75593 365 aa18.3■□□□□ 0.52
CDX1-201ENST00000231656 MDKP21741 143 aaPredicted RBP18.3■□□□□ 0.52
CDX1-201ENST00000231656 REG1BP48304 166 aa18.3■□□□□ 0.52
CDX1-201ENST00000231656 ARF6P62330 175 aa18.3■□□□□ 0.52
CDX1-201ENST00000231656 RPP30P78346 268 aaKnown RBP18.3■□□□□ 0.52
CDX1-201ENST00000231656 DIAPH2-AS1Q14236 149 aa18.3■□□□□ 0.52
CDX1-201ENST00000231656 OSR1Q8TAX0 266 aaPredicted RBP18.3■□□□□ 0.52
CDX1-201ENST00000231656 VSIRQ9H7M9 311 aa18.3■□□□□ 0.52
CDX1-201ENST00000231656 hCG_1809904A0A1W2PP81 198 aa18.29■□□□□ 0.52
CDX1-201ENST00000231656 A0A1W2PPE2 198 aa18.29■□□□□ 0.52
CDX1-201ENST00000231656 A0A1W2PR64 198 aa18.29■□□□□ 0.52
CDX1-201ENST00000231656 A0A1W2PRV1 198 aa18.29■□□□□ 0.52
CDX1-201ENST00000231656 HOXA1P49639 335 aaPredicted RBP18.29■□□□□ 0.52
CDX1-201ENST00000231656 TMEM177Q53S58 311 aa18.29■□□□□ 0.52
CDX1-201ENST00000231656 Q8N7P7 452 aa18.29■□□□□ 0.52
CDX1-201ENST00000231656 TMEM170AQ8WVE7 144 aa18.29■□□□□ 0.52
CDX1-201ENST00000231656 AIFM2Q9BRQ8 373 aa18.29■□□□□ 0.52
CDX1-201ENST00000231656 NKX6-2Q9C056 277 aaPredicted RBP18.29■□□□□ 0.52
CDX1-201ENST00000231656 BET1LQ9NYM9 111 aa18.29■□□□□ 0.52
CDX1-201ENST00000231656 PRNDQ9UKY0 176 aa18.29■□□□□ 0.52
CDX1-201ENST00000231656 TMA7Q9Y2S6 64 aaKnown RBP18.29■□□□□ 0.52
CDX1-201ENST00000231656 PDZD2O15018 2839 aa18.28■□□□□ 0.52
CDX1-201ENST00000231656 TRAV1-1A0A0B4J248 108 aa18.28■□□□□ 0.52
CDX1-201ENST00000231656 M0R1W7 72 aa18.28■□□□□ 0.52
CDX1-201ENST00000231656 IFNA10P01566 189 aa18.28■□□□□ 0.52
CDX1-201ENST00000231656 DLX1P56177 255 aa18.28■□□□□ 0.52
CDX1-201ENST00000231656 PBDC1Q9BVG4 233 aa18.28■□□□□ 0.52
CDX1-201ENST00000231656 POLR3KQ9Y2Y1 108 aaPredicted RBP18.28■□□□□ 0.52
CDX1-201ENST00000231656 OR51B2Q9Y5P1 312 aa18.28■□□□□ 0.52
CDX1-201ENST00000231656 IGHV2-70DA0A0C4DH43 119 aa18.27■□□□□ 0.52
CDX1-201ENST00000231656 RRHO14718 337 aa18.27■□□□□ 0.52
CDX1-201ENST00000231656 SAA1P0DJI8 122 aaPredicted RBP18.27■□□□□ 0.52
CDX1-201ENST00000231656 MYOD1P15172 320 aa18.27■□□□□ 0.52
CDX1-201ENST00000231656 FGF7P21781 194 aa18.27■□□□□ 0.52
CDX1-201ENST00000231656 USF1P22415 310 aaPredicted RBP18.27■□□□□ 0.52
CDX1-201ENST00000231656 Q5PR19 223 aa18.27■□□□□ 0.52
CDX1-201ENST00000231656 SFT2D1Q8WV19 159 aa18.27■□□□□ 0.52
CDX1-201ENST00000231656 EIF5A2Q9GZV4 153 aaKnown RBP18.27■□□□□ 0.52
CDX1-201ENST00000231656 KIAA1456Q9P272 454 aa18.27■□□□□ 0.52
CDX1-201ENST00000231656 ZNF257Q9Y2Q1 563 aa18.27■□□□□ 0.52
CDX1-201ENST00000231656 PRSS46E5RG02 174 aa18.27■□□□□ 0.51
CDX1-201ENST00000231656 H7C2Y5 167 aa18.27■□□□□ 0.51
CDX1-201ENST00000231656 HBE1P02100 147 aa18.27■□□□□ 0.51
CDX1-201ENST00000231656 ZNF726P1Q15940 193 aa18.27■□□□□ 0.51
CDX1-201ENST00000231656 TMEM41BQ5BJD5 291 aa18.27■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms