RNA–Protein interactions for RNA: ENST00000219334.9

SMPD3-201, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPD3, Length 5,453 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-201ENST00000219334 SEMA5BQ9P283 1151 aa16.01■□□□□ 0.15
SMPD3-201ENST00000219334 COL11A1P12107 1806 aaPredicted RBP16.01■□□□□ 0.15
SMPD3-201ENST00000219334 DIRC3C9JPN6 131 aa16.01■□□□□ 0.15
SMPD3-201ENST00000219334 CELA3BP08861 270 aa16.01■□□□□ 0.15
SMPD3-201ENST00000219334 MBNL2Q5VZF2 373 aaKnown RBP16.01■□□□□ 0.15
SMPD3-201ENST00000219334 COLCA1Q6ZS62 124 aa16.01■□□□□ 0.15
SMPD3-201ENST00000219334 FOXA2Q9Y261 457 aaPredicted RBP16.01■□□□□ 0.15
SMPD3-201ENST00000219334 S4R3C0 116 aa16.01■□□□□ 0.15
SMPD3-201ENST00000219334 VDAC2P45880 294 aaPredicted RBP16.01■□□□□ 0.15
SMPD3-201ENST00000219334 IGHV3-66A0A0C4DH42 116 aa16■□□□□ 0.15
SMPD3-201ENST00000219334 SGK494Q96LW2 274 aa16■□□□□ 0.15
SMPD3-201ENST00000219334 IFI27L2Q9H2X8 130 aa16■□□□□ 0.15
SMPD3-201ENST00000219334 IGKV1D-43A0A0B4J1Z2 117 aa16■□□□□ 0.15
SMPD3-201ENST00000219334 H0YL77 283 aa16■□□□□ 0.15
SMPD3-201ENST00000219334 H7C1H1 209 aa16■□□□□ 0.15
SMPD3-201ENST00000219334 UQCRFS1P47985 274 aa16■□□□□ 0.15
SMPD3-201ENST00000219334 OR4A47Q6IF82 309 aa16■□□□□ 0.15
SMPD3-201ENST00000219334 AQP10Q96PS8 301 aa16■□□□□ 0.15
SMPD3-201ENST00000219334 SNRNP200O75643 2136 aaKnown RBP16■□□□□ 0.15
SMPD3-201ENST00000219334 ABLIM2Q6H8Q1 611 aa16■□□□□ 0.15
SMPD3-201ENST00000219334 ZNFX1Q9P2E3 1918 aaKnown RBP16■□□□□ 0.15
SMPD3-201ENST00000219334 BRWD3Q6RI45 1802 aa15.99■□□□□ 0.15
SMPD3-201ENST00000219334 NTN3O00634 580 aaPredicted RBP15.99■□□□□ 0.15
SMPD3-201ENST00000219334 TCTAP57738 103 aa15.99■□□□□ 0.15
SMPD3-201ENST00000219334 TBR1Q16650 682 aa15.99■□□□□ 0.15
SMPD3-201ENST00000219334 MEIG1Q5JSS6 88 aa15.99■□□□□ 0.15
SMPD3-201ENST00000219334 COPS9Q8WXC6 57 aa15.99■□□□□ 0.15
SMPD3-201ENST00000219334 COL25A1Q9BXS0 654 aaPredicted RBP15.99■□□□□ 0.15
SMPD3-201ENST00000219334 PRSS2P07478 247 aa15.99■□□□□ 0.15
SMPD3-201ENST00000219334 ICAM4Q14773 271 aa15.99■□□□□ 0.15
SMPD3-201ENST00000219334 CLEC19AQ6UXS0 136 aa15.99■□□□□ 0.15
SMPD3-201ENST00000219334 CXCL2P19875 107 aa15.99■□□□□ 0.15
SMPD3-201ENST00000219334 CA7P43166 264 aa15.99■□□□□ 0.15
SMPD3-201ENST00000219334 CFHR1Q03591 330 aa15.99■□□□□ 0.15
SMPD3-201ENST00000219334 AKAP6Q13023 2319 aa15.99■□□□□ 0.15
SMPD3-201ENST00000219334 DUX3Q96PT4 197 aa15.99■□□□□ 0.15
SMPD3-201ENST00000219334 MRPL20Q9BYC9 149 aaKnown RBP15.99■□□□□ 0.15
SMPD3-201ENST00000219334 LRRC37AA6NMS7 1700 aa15.99■□□□□ 0.15
SMPD3-201ENST00000219334 PPP1R17O96001 155 aa15.98■□□□□ 0.15
SMPD3-201ENST00000219334 IGHV3-11P01762 117 aa15.98■□□□□ 0.15
SMPD3-201ENST00000219334 NEU1Q99519 415 aa15.98■□□□□ 0.15
SMPD3-201ENST00000219334 LGALS3P17931 250 aaKnown RBP15.98■□□□□ 0.15
SMPD3-201ENST00000219334 RBFOX2O43251 390 aaKnown RBP eCLIP15.98■□□□□ 0.15
SMPD3-201ENST00000219334 MYOD1P15172 320 aa15.98■□□□□ 0.15
SMPD3-201ENST00000219334 C1QL2Q7Z5L3 287 aa15.98■□□□□ 0.15
SMPD3-201ENST00000219334 ZNF837Q96EG3 531 aaPredicted RBP15.98■□□□□ 0.15
SMPD3-201ENST00000219334 FBLIM1Q8WUP2 373 aa15.98■□□□□ 0.15
SMPD3-201ENST00000219334 HTN3P15516 51 aa15.98■□□□□ 0.15
SMPD3-201ENST00000219334 DSCR9P59020 149 aa15.98■□□□□ 0.15
SMPD3-201ENST00000219334 TP53RKQ96S44 253 aa15.98■□□□□ 0.15
SMPD3-201ENST00000219334 PAM16Q9Y3D7 125 aa15.98■□□□□ 0.15
SMPD3-201ENST00000219334 TMEM101Q96IK0 257 aa15.97■□□□□ 0.15
SMPD3-201ENST00000219334 RRHO14718 337 aa15.97■□□□□ 0.15
SMPD3-201ENST00000219334 C8orf46Q8TAG6 207 aa15.97■□□□□ 0.15
SMPD3-201ENST00000219334 TM2D1Q9BX74 207 aa15.97■□□□□ 0.15
SMPD3-201ENST00000219334 IFT22Q9H7X7 185 aa15.97■□□□□ 0.15
SMPD3-201ENST00000219334 TNFRSF18Q9Y5U5 241 aa15.97■□□□□ 0.15
SMPD3-201ENST00000219334 LINC00862A6NCI5 91 aa15.97■□□□□ 0.15
SMPD3-201ENST00000219334 NPIPB7O75200 414 aa15.97■□□□□ 0.15
SMPD3-201ENST00000219334 KLK15Q9H2R5 256 aa15.97■□□□□ 0.15
SMPD3-201ENST00000219334 MYOFQ9NZM1 2061 aa15.97■□□□□ 0.15
SMPD3-201ENST00000219334 GCHFRP30047 84 aa15.97■□□□□ 0.15
SMPD3-201ENST00000219334 TAS2R60P59551 318 aa15.97■□□□□ 0.15
SMPD3-201ENST00000219334 MDKP21741 143 aaPredicted RBP15.96■□□□□ 0.15
SMPD3-201ENST00000219334 DEPPQ9NTK1 212 aa15.96■□□□□ 0.15
SMPD3-201ENST00000219334 H7C2G1 150 aa15.96■□□□□ 0.15
SMPD3-201ENST00000219334 NBR2O15453 112 aa15.96■□□□□ 0.15
SMPD3-201ENST00000219334 SUMO2P61956 95 aaKnown RBP15.96■□□□□ 0.15
SMPD3-201ENST00000219334 SAMD13Q5VXD3 122 aa15.96■□□□□ 0.15
SMPD3-201ENST00000219334 ARFGEF1Q9Y6D6 1849 aa15.96■□□□□ 0.15
SMPD3-201ENST00000219334 NBEAP1P0C6P0 100 aa15.96■□□□□ 0.15
SMPD3-201ENST00000219334 ASIPP42127 132 aa15.96■□□□□ 0.15
SMPD3-201ENST00000219334 ZNF256Q9Y2P7 627 aaPredicted RBP15.96■□□□□ 0.15
SMPD3-201ENST00000219334 LEPROTL1O95214 131 aa15.96■□□□□ 0.14
SMPD3-201ENST00000219334 ZNF250P15622 560 aa15.96■□□□□ 0.14
SMPD3-201ENST00000219334 CCL3L1P16619 93 aa15.96■□□□□ 0.14
SMPD3-201ENST00000219334 UNQ6494/PRO21346Q6UXR6 183 aa15.96■□□□□ 0.14
SMPD3-201ENST00000219334 TMEM70Q9BUB7 260 aa15.96■□□□□ 0.14
SMPD3-201ENST00000219334 TUBGCP6Q96RT7 1819 aa15.96■□□□□ 0.14
SMPD3-201ENST00000219334 TRAV20A0A0B4J274 112 aa15.95■□□□□ 0.14
SMPD3-201ENST00000219334 HIST1H2BAQ96A08 127 aa15.95■□□□□ 0.14
SMPD3-201ENST00000219334 LINC01587Q99440 93 aa15.95■□□□□ 0.14
SMPD3-201ENST00000219334 PARP14Q460N5 1801 aa15.95■□□□□ 0.14
SMPD3-201ENST00000219334 PSMB11A5LHX3 300 aa15.95■□□□□ 0.14
SMPD3-201ENST00000219334 MSGN1A6NI15 193 aa15.95■□□□□ 0.14
SMPD3-201ENST00000219334 IL6RP08887 468 aaPredicted RBP15.95■□□□□ 0.14
SMPD3-201ENST00000219334 SH3BGRL3Q9H299 93 aa15.95■□□□□ 0.14
SMPD3-201ENST00000219334 WDR90Q96KV7 1748 aa15.95■□□□□ 0.14
SMPD3-201ENST00000219334 TRBV20OR9-2A0A075B6H5 130 aa15.95■□□□□ 0.14
SMPD3-201ENST00000219334 TEX45Q8NA69 505 aa15.95■□□□□ 0.14
SMPD3-201ENST00000219334 C17orf98A8MV24 154 aa15.95■□□□□ 0.14
SMPD3-201ENST00000219334 NRXN2Q9P2S2 1712 aa15.95■□□□□ 0.14
SMPD3-201ENST00000219334 GGACTQ9BVM4 153 aa15.95■□□□□ 0.14
SMPD3-201ENST00000219334 ZFC3H1O60293 1989 aaKnown RBP15.94■□□□□ 0.14
SMPD3-201ENST00000219334 CSRP3P50461 194 aa15.94■□□□□ 0.14
SMPD3-201ENST00000219334 MRPS16Q9Y3D3 137 aaKnown RBP15.94■□□□□ 0.14
SMPD3-201ENST00000219334 EMP1P54849 157 aa15.94■□□□□ 0.14
SMPD3-201ENST00000219334 WNT10AQ9GZT5 417 aa15.94■□□□□ 0.14
SMPD3-201ENST00000219334 CBY1Q9Y3M2 126 aa15.94■□□□□ 0.14
SMPD3-201ENST00000219334 A0A0G2JK05 382 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms