RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 TMEM250H0YL14 139 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 ZIC3O60481 467 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 SULT1A1P50225 295 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 FOXF2Q12947 444 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 KHDC3LQ587J8 217 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 ACP7Q6ZNF0 438 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 GPR27Q9NS67 375 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 CGB7P0DN87 165 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 ELLP55199 621 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-218ENST00000640036 TMEM249Q2WGJ8 235 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 ADGRL4Q9HBW9 690 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 IGKV3-11P04433 115 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 CGB3P0DN86 165 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 EVX1P49640 407 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 SUCLG1P53597 346 aaKnown RBP4.27□□□□□ -1.73
SCN1A-218ENST00000640036 CACNG7P62955 275 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 HLA-DRB3P79483 266 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 OR5AU1Q8NGC0 362 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 ARPC1AQ92747 370 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 IL20Q9NYY1 176 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 NUP210Q8TEM1 1887 aaPredicted RBP4.26□□□□□ -1.73
SCN1A-218ENST00000640036 AGRNO00468 2067 aa4.26□□□□□ -1.73
SCN1A-218ENST00000640036 OOSP1A8MZH6 123 aa4.26□□□□□ -1.73
SCN1A-218ENST00000640036 RAMP1O60894 148 aa4.26□□□□□ -1.73
SCN1A-218ENST00000640036 MBPP02686 304 aaPredicted RBP4.26□□□□□ -1.73
SCN1A-218ENST00000640036 DLX6P56179 175 aa4.26□□□□□ -1.73
SCN1A-218ENST00000640036 RAE1P78406 368 aaKnown RBP4.26□□□□□ -1.73
SCN1A-218ENST00000640036 OR2K2Q8NGT1 345 aa4.26□□□□□ -1.73
SCN1A-218ENST00000640036 GATA6Q92908 595 aa4.26□□□□□ -1.73
SCN1A-218ENST00000640036 DUX3Q96PT4 197 aa4.26□□□□□ -1.73
SCN1A-218ENST00000640036 MMP28Q9H239 520 aa4.26□□□□□ -1.73
SCN1A-218ENST00000640036 FOXA2Q9Y261 457 aaPredicted RBP4.26□□□□□ -1.73
SCN1A-218ENST00000640036 A0A1W2PPE3 182 aa4.26□□□□□ -1.73
SCN1A-218ENST00000640036 IGHV3-11P01762 117 aa4.26□□□□□ -1.73
SCN1A-218ENST00000640036 RD3LP0DJH9 198 aa4.26□□□□□ -1.73
SCN1A-218ENST00000640036 CEACAM8P31997 349 aaPredicted RBP4.26□□□□□ -1.73
SCN1A-218ENST00000640036 BRD3OSQ6XYD6 125 aa4.26□□□□□ -1.73
SCN1A-218ENST00000640036 C5orf17Q8NAS9 161 aa4.26□□□□□ -1.73
SCN1A-218ENST00000640036 NRTNQ99748 197 aa4.26□□□□□ -1.73
SCN1A-218ENST00000640036 A0A0G2JMM0 328 aa4.26□□□□□ -1.73
SCN1A-218ENST00000640036 A0A1W2PPB8 328 aa4.26□□□□□ -1.73
SCN1A-218ENST00000640036 A0A1W2PRS3 328 aa4.26□□□□□ -1.73
SCN1A-218ENST00000640036 KIR3DP1A8MWS1 328 aa4.26□□□□□ -1.73
SCN1A-218ENST00000640036 ZNF324O75467 553 aaPredicted RBP4.26□□□□□ -1.73
SCN1A-218ENST00000640036 CDKN2AP42771 156 aaKnown RBP4.26□□□□□ -1.73
SCN1A-218ENST00000640036 SCAND1P57086 179 aa4.26□□□□□ -1.73
SCN1A-218ENST00000640036 LINC01559Q495D7 138 aa4.26□□□□□ -1.73
SCN1A-218ENST00000640036 PIP4P2Q8N4L2 257 aa4.26□□□□□ -1.73
SCN1A-218ENST00000640036 OR2D3Q8NGH3 330 aa4.26□□□□□ -1.73
SCN1A-218ENST00000640036 NEUROG1Q92886 237 aa4.26□□□□□ -1.73
SCN1A-218ENST00000640036 KLF9Q13886 244 aaPredicted RBP4.26□□□□□ -1.73
SCN1A-218ENST00000640036 CDK5R1Q15078 307 aa4.26□□□□□ -1.73
SCN1A-218ENST00000640036 PMCHL1Q16048 86 aa4.26□□□□□ -1.73
SCN1A-218ENST00000640036 SHISA2Q6UWI4 295 aa4.26□□□□□ -1.73
SCN1A-218ENST00000640036 TPRX1Q8N7U7 411 aa4.26□□□□□ -1.73
SCN1A-218ENST00000640036 PHYHIPLQ96FC7 376 aa4.26□□□□□ -1.73
SCN1A-218ENST00000640036 PRO3102Q9H379 93 aa4.26□□□□□ -1.73
SCN1A-218ENST00000640036 FLRT3Q9NZU0 649 aa4.26□□□□□ -1.73
SCN1A-218ENST00000640036 TBL2Q9Y4P3 447 aaKnown RBP4.26□□□□□ -1.73
SCN1A-218ENST00000640036 TLN1Q9Y490 2541 aaKnown RBP4.26□□□□□ -1.73
SCN1A-218ENST00000640036 LOC102724200A0A096LPH7 203 aaPredicted RBP4.26□□□□□ -1.73
SCN1A-218ENST00000640036 MT-ND6P03923 174 aa4.26□□□□□ -1.73
SCN1A-218ENST00000640036 GABRB1P18505 474 aa4.26□□□□□ -1.73
SCN1A-218ENST00000640036 ASAH1Q13510 395 aa4.26□□□□□ -1.73
SCN1A-218ENST00000640036 WDR38Q5JTN6 314 aa4.26□□□□□ -1.73
SCN1A-218ENST00000640036 C9orf66Q5T8R8 295 aa4.26□□□□□ -1.73
SCN1A-218ENST00000640036 ZCCHC24Q8N2G6 241 aaKnown RBP4.26□□□□□ -1.73
SCN1A-218ENST00000640036 TMEM54Q969K7 222 aa4.26□□□□□ -1.73
SCN1A-218ENST00000640036 SOX21Q9Y651 276 aaPredicted RBP4.26□□□□□ -1.73
SCN1A-218ENST00000640036 IFITM10A6NMD0 228 aa4.26□□□□□ -1.73
SCN1A-218ENST00000640036 IGHG3P01860 377 aa4.26□□□□□ -1.73
SCN1A-218ENST00000640036 HBZP02008 142 aa4.26□□□□□ -1.73
SCN1A-218ENST00000640036 BGLAPP02818 100 aa4.26□□□□□ -1.73
SCN1A-218ENST00000640036 FAM90A1Q86YD7 464 aa4.26□□□□□ -1.73
SCN1A-218ENST00000640036 TMEM167AQ8TBQ9 72 aa4.26□□□□□ -1.73
SCN1A-218ENST00000640036 MRPL30Q8TCC3 161 aaKnown RBP4.26□□□□□ -1.73
SCN1A-218ENST00000640036 GEMIN7Q9H840 131 aaKnown RBP4.26□□□□□ -1.73
SCN1A-218ENST00000640036 PIEZO2Q9H5I5 2752 aa4.26□□□□□ -1.73
SCN1A-218ENST00000640036 LINC00862A6NCI5 91 aa4.25□□□□□ -1.73
SCN1A-218ENST00000640036 OR11H12B2RN74 326 aa4.25□□□□□ -1.73
SCN1A-218ENST00000640036 DUSP14O95147 198 aaKnown RBP4.25□□□□□ -1.73
SCN1A-218ENST00000640036 IGHMP01871 453 aa4.25□□□□□ -1.73
SCN1A-218ENST00000640036 SMIM10L1P0DMW3 83 aa4.25□□□□□ -1.73
SCN1A-218ENST00000640036 PKIAP61925 76 aa4.25□□□□□ -1.73
SCN1A-218ENST00000640036 DHRS2Q13268 280 aa4.25□□□□□ -1.73
SCN1A-218ENST00000640036 TMEM155Q4W5P6 130 aa4.25□□□□□ -1.73
SCN1A-218ENST00000640036 FAM53AQ6NSI3 398 aaPredicted RBP4.25□□□□□ -1.73
SCN1A-218ENST00000640036 C17orf82Q86X59 251 aaPredicted RBP4.25□□□□□ -1.73
SCN1A-218ENST00000640036 OR9G4Q8NGQ1 327 aa4.25□□□□□ -1.73
SCN1A-218ENST00000640036 SMIM10Q96HG1 83 aa4.25□□□□□ -1.73
SCN1A-218ENST00000640036 DTX4Q9Y2E6 619 aa4.25□□□□□ -1.73
SCN1A-218ENST00000640036 EML6Q6ZMW3 1958 aa4.25□□□□□ -1.73
SCN1A-218ENST00000640036 IGKV3D-11A0A0A0MRZ8 115 aa4.25□□□□□ -1.73
SCN1A-218ENST00000640036 M0R1W7 72 aa4.25□□□□□ -1.73
SCN1A-218ENST00000640036 M6PRP20645 277 aa4.25□□□□□ -1.73
SCN1A-218ENST00000640036 UNC119Q13432 240 aa4.25□□□□□ -1.73
SCN1A-218ENST00000640036 HGDQ93099 445 aa4.25□□□□□ -1.73
SCN1A-218ENST00000640036 OR51B2Q9Y5P1 312 aa4.25□□□□□ -1.73
SCN1A-218ENST00000640036 ANKRD11Q6UB99 2663 aaPredicted RBP4.25□□□□□ -1.73
SCN1A-218ENST00000640036 LOC389332A0A1B0GUA5 103 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms