RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 NPIPB5A8MRT5 1133 aa11.17□□□□□ -0.62
SYNE2-228ENST00000639659 A8MWP6 167 aa11.17□□□□□ -0.62
SYNE2-228ENST00000639659 KBTBD11O94819 623 aa11.17□□□□□ -0.62
SYNE2-228ENST00000639659 DHFRP00374 187 aa11.17□□□□□ -0.62
SYNE2-228ENST00000639659 IL6RP08887 468 aaPredicted RBP11.17□□□□□ -0.62
SYNE2-228ENST00000639659 CD37P11049 281 aa11.17□□□□□ -0.62
SYNE2-228ENST00000639659 MYOD1P15172 320 aa11.17□□□□□ -0.62
SYNE2-228ENST00000639659 CD36P16671 472 aa11.17□□□□□ -0.62
SYNE2-228ENST00000639659 GPR183P32249 361 aa11.17□□□□□ -0.62
SYNE2-228ENST00000639659 PSMD7P51665 324 aa11.17□□□□□ -0.62
SYNE2-228ENST00000639659 TMEM91Q6ZNR0 172 aa11.17□□□□□ -0.62
SYNE2-228ENST00000639659 ZNF645Q8N7E2 425 aa11.17□□□□□ -0.62
SYNE2-228ENST00000639659 OR10R2Q8NGX6 335 aa11.17□□□□□ -0.62
SYNE2-228ENST00000639659 FBLIM1Q8WUP2 373 aa11.17□□□□□ -0.62
SYNE2-228ENST00000639659 SPATA2Q9UM82 520 aa11.17□□□□□ -0.62
SYNE2-228ENST00000639659 LSM2Q9Y333 95 aaKnown RBP11.17□□□□□ -0.62
SYNE2-228ENST00000639659 IGKV1D-8A0A087WSZ0 117 aa11.16□□□□□ -0.62
SYNE2-228ENST00000639659 E7EUB6 86 aa11.16□□□□□ -0.62
SYNE2-228ENST00000639659 HIST1H1DP16402 221 aaKnown RBP11.16□□□□□ -0.62
SYNE2-228ENST00000639659 NFYAP23511 347 aaPredicted RBP11.16□□□□□ -0.62
SYNE2-228ENST00000639659 PSMB6P28072 239 aa11.16□□□□□ -0.62
SYNE2-228ENST00000639659 RPL30P62888 115 aaKnown RBP11.16□□□□□ -0.62
SYNE2-228ENST00000639659 OR2C3Q8N628 320 aa11.16□□□□□ -0.62
SYNE2-228ENST00000639659 TMEM217Q8N7C4 229 aa11.16□□□□□ -0.62
SYNE2-228ENST00000639659 STPG3Q8N7X2 389 aa11.16□□□□□ -0.62
SYNE2-228ENST00000639659 OR4S2Q8NH73 311 aa11.16□□□□□ -0.62
SYNE2-228ENST00000639659 VSTM2AQ8TAG5 236 aa11.16□□□□□ -0.62
SYNE2-228ENST00000639659 PHLDA1Q8WV24 401 aaPredicted RBP11.16□□□□□ -0.62
SYNE2-228ENST00000639659 FANCD2OSQ96PS1 177 aa11.16□□□□□ -0.62
SYNE2-228ENST00000639659 OR2A7Q96R45 310 aa11.16□□□□□ -0.62
SYNE2-228ENST00000639659 V9GY05 133 aa11.16□□□□□ -0.62
SYNE2-228ENST00000639659 MFNGO00587 321 aa11.15□□□□□ -0.62
SYNE2-228ENST00000639659 DIRAS3O95661 229 aa11.15□□□□□ -0.62
SYNE2-228ENST00000639659 CLEC3BP05452 202 aa11.15□□□□□ -0.62
SYNE2-228ENST00000639659 Q6ZWC4 215 aa11.15□□□□□ -0.62
SYNE2-228ENST00000639659 WFDC3Q8IUB2 231 aa11.15□□□□□ -0.62
SYNE2-228ENST00000639659 C8orf4Q9NR00 106 aa11.15□□□□□ -0.62
SYNE2-228ENST00000639659 SLC2A9Q9NRM0 540 aa11.15□□□□□ -0.62
SYNE2-228ENST00000639659 TP53TG1Q9Y2A0 90 aa11.15□□□□□ -0.62
SYNE2-228ENST00000639659 RBMX2Q9Y388 322 aaKnown RBP11.15□□□□□ -0.62
SYNE2-228ENST00000639659 TRAV25A0A0B4J276 109 aa11.14□□□□□ -0.63
SYNE2-228ENST00000639659 A0A1B0GW64 132 aa11.14□□□□□ -0.63
SYNE2-228ENST00000639659 RPA2P15927 270 aa11.14□□□□□ -0.63
SYNE2-228ENST00000639659 HIST1H1BP16401 226 aaKnown RBP11.14□□□□□ -0.63
SYNE2-228ENST00000639659 OR10A3P58181 314 aa11.14□□□□□ -0.63
SYNE2-228ENST00000639659 RCN1Q15293 331 aa11.14□□□□□ -0.63
SYNE2-228ENST00000639659 PLET1Q6UQ28 207 aa11.14□□□□□ -0.63
SYNE2-228ENST00000639659 OR5B3Q8NH48 314 aa11.14□□□□□ -0.63
SYNE2-228ENST00000639659 MARC2Q969Z3 335 aa11.14□□□□□ -0.63
SYNE2-228ENST00000639659 GPHA2Q96T91 129 aa11.14□□□□□ -0.63
SYNE2-228ENST00000639659 SCN3BQ9NY72 215 aa11.14□□□□□ -0.63
SYNE2-228ENST00000639659 TAS2R8Q9NYW2 309 aa11.14□□□□□ -0.63
SYNE2-228ENST00000639659 FBXL17Q9UF56 701 aa11.14□□□□□ -0.63
SYNE2-228ENST00000639659 ELF5Q9UKW6 265 aaPredicted RBP11.14□□□□□ -0.63
SYNE2-228ENST00000639659 UFC1Q9Y3C8 167 aa11.14□□□□□ -0.63
SYNE2-228ENST00000639659 TRBV7-1A0A0A6YYK4 115 aa11.13□□□□□ -0.63
SYNE2-228ENST00000639659 ZNF735P0CB33 412 aa11.13□□□□□ -0.63
SYNE2-228ENST00000639659 FCGR2BP31994 310 aaPredicted RBP11.13□□□□□ -0.63
SYNE2-228ENST00000639659 RANBP1P43487 201 aa11.13□□□□□ -0.63
SYNE2-228ENST00000639659 FABP5Q01469 135 aa11.13□□□□□ -0.63
SYNE2-228ENST00000639659 TRAM1Q15629 374 aa11.13□□□□□ -0.63
SYNE2-228ENST00000639659 TMEM167AQ8TBQ9 72 aa11.13□□□□□ -0.63
SYNE2-228ENST00000639659 RNF183Q96D59 192 aa11.13□□□□□ -0.63
SYNE2-228ENST00000639659 CXorf58Q96LI9 332 aa11.13□□□□□ -0.63
SYNE2-228ENST00000639659 SPAG8Q99932 426 aaPredicted RBP11.13□□□□□ -0.63
SYNE2-228ENST00000639659 CCDC90BQ9GZT6 254 aa11.13□□□□□ -0.63
SYNE2-228ENST00000639659 HRASLSQ9HDD0 168 aa11.13□□□□□ -0.63
SYNE2-228ENST00000639659 MRPL27Q9P0M9 148 aaKnown RBP11.13□□□□□ -0.63
SYNE2-228ENST00000639659 OR2W1Q9Y3N9 320 aa11.13□□□□□ -0.63
SYNE2-228ENST00000639659 KMT2AQ03164 3969 aa11.13□□□□□ -0.63
SYNE2-228ENST00000639659 DNAH10Q8IVF4 4471 aa11.12□□□□□ -0.63
SYNE2-228ENST00000639659 IGLV11-55A0A075B6I3 123 aa11.12□□□□□ -0.63
SYNE2-228ENST00000639659 IGHV3OR16-8A0A075B7F1 116 aa11.12□□□□□ -0.63
SYNE2-228ENST00000639659 IGKV1D-13A0A0B4J2D9 117 aa11.12□□□□□ -0.63
SYNE2-228ENST00000639659 UBE2CO00762 179 aa11.12□□□□□ -0.63
SYNE2-228ENST00000639659 TNFSF12O43508 249 aa11.12□□□□□ -0.63
SYNE2-228ENST00000639659 S1PR2O95136 353 aa11.12□□□□□ -0.63
SYNE2-228ENST00000639659 IGKV1-13P0DP09 117 aa11.12□□□□□ -0.63
SYNE2-228ENST00000639659 CTRB1P17538 263 aa11.12□□□□□ -0.63
SYNE2-228ENST00000639659 MAS1LP35410 378 aa11.12□□□□□ -0.63
SYNE2-228ENST00000639659 RPL8P62917 257 aaKnown RBP11.12□□□□□ -0.63
SYNE2-228ENST00000639659 LGALS9CQ6DKI2 356 aa11.12□□□□□ -0.63
SYNE2-228ENST00000639659 CTRB2Q6GPI1 263 aa11.12□□□□□ -0.63
SYNE2-228ENST00000639659 PUSL1Q8N0Z8 303 aaKnown RBP11.12□□□□□ -0.63
SYNE2-228ENST00000639659 C20orf24Q9BUV8 137 aa11.12□□□□□ -0.63
SYNE2-228ENST00000639659 ATG5Q9H1Y0 275 aa11.12□□□□□ -0.63
SYNE2-228ENST00000639659 METTL21EPA6NDL7 271 aa11.11□□□□□ -0.63
SYNE2-228ENST00000639659 ZNF207O43670 478 aaKnown RBP11.11□□□□□ -0.63
SYNE2-228ENST00000639659 CRYGCP07315 174 aa11.11□□□□□ -0.63
SYNE2-228ENST00000639659 HLA-GP17693 338 aa11.11□□□□□ -0.63
SYNE2-228ENST00000639659 PSMA1P25786 263 aaKnown RBP11.11□□□□□ -0.63
SYNE2-228ENST00000639659 NANOS2P60321 138 aaKnown RBP11.11□□□□□ -0.63
SYNE2-228ENST00000639659 ODF3L2Q3SX64 289 aa11.11□□□□□ -0.63
SYNE2-228ENST00000639659 LAMTOR1Q6IAA8 161 aa11.11□□□□□ -0.63
SYNE2-228ENST00000639659 ZNF502Q8TBZ5 544 aa11.11□□□□□ -0.63
SYNE2-228ENST00000639659 HSD17B10Q99714 261 aaKnown RBP11.11□□□□□ -0.63
SYNE2-228ENST00000639659 CENPOQ9BU64 300 aa11.11□□□□□ -0.63
SYNE2-228ENST00000639659 PCLOQ9Y6V0 5065 aa11.11□□□□□ -0.63
SYNE2-228ENST00000639659 IGHV3-21A0A0B4J1V1 117 aa11.1□□□□□ -0.63
SYNE2-228ENST00000639659 SMIM30A4D0T7 59 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms