RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 GATSQ8NAP1 163 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 OR8A1Q8NGG7 326 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 OR51H1Q8NH63 302 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 PRSS3P2Q8NHM4 247 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 OCC1Q8TAD7 63 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 PPDPFLQ8WWR9 84 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 ZNF775Q96BV0 537 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-216ENST00000637968 PRELID3AQ96N28 172 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 OXGR1Q96P68 337 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 NRTNQ99748 197 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 NUDT22Q9BRQ3 303 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 LIN7CQ9NUP9 197 aaKnown RBP4.87□□□□□ -1.63
SCN1A-216ENST00000637968 SIGLEC8Q9NYZ4 499 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 ONECUT1Q9UBC0 465 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 TP53TG3Q9ULZ0 132 aa4.87□□□□□ -1.63
SCN1A-216ENST00000637968 DOCK1Q14185 1865 aa4.86□□□□□ -1.63
SCN1A-216ENST00000637968 SDK1Q7Z5N4 2213 aa4.86□□□□□ -1.63
SCN1A-216ENST00000637968 COL11A2P13942 1736 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-216ENST00000637968 DOCK11Q5JSL3 2073 aa4.86□□□□□ -1.63
SCN1A-216ENST00000637968 GABRG2P18507 467 aa4.86□□□□□ -1.63
SCN1A-216ENST00000637968 GUSBP1Q15486 140 aa4.86□□□□□ -1.63
SCN1A-216ENST00000637968 IBA57Q5T440 356 aaKnown RBP4.86□□□□□ -1.63
SCN1A-216ENST00000637968 Q8N976 141 aa4.86□□□□□ -1.63
SCN1A-216ENST00000637968 CHCHD1Q96BP2 118 aaKnown RBP4.86□□□□□ -1.63
SCN1A-216ENST00000637968 SCRT2Q9NQ03 307 aa4.86□□□□□ -1.63
SCN1A-216ENST00000637968 DUSP13Q9UII6 198 aa4.86□□□□□ -1.63
SCN1A-216ENST00000637968 OR2W1Q9Y3N9 320 aa4.86□□□□□ -1.63
SCN1A-216ENST00000637968 MYLKQ15746 1914 aa4.86□□□□□ -1.63
SCN1A-216ENST00000637968 TRAV8-2A0A0B4J237 113 aa4.86□□□□□ -1.63
SCN1A-216ENST00000637968 LOC107984156A0A0G2JMH3 177 aa4.86□□□□□ -1.63
SCN1A-216ENST00000637968 PRR33A8MZF0 331 aa4.86□□□□□ -1.63
SCN1A-216ENST00000637968 IL4P05112 153 aa4.86□□□□□ -1.63
SCN1A-216ENST00000637968 PRTN3P24158 256 aa4.86□□□□□ -1.63
SCN1A-216ENST00000637968 TNFRSF4P43489 277 aa4.86□□□□□ -1.63
SCN1A-216ENST00000637968 ATP5G3P48201 142 aa4.86□□□□□ -1.63
SCN1A-216ENST00000637968 PGFP49763 221 aa4.86□□□□□ -1.63
SCN1A-216ENST00000637968 PPP1CAP62136 330 aa4.86□□□□□ -1.63
SCN1A-216ENST00000637968 GNB1P62873 340 aa4.86□□□□□ -1.63
SCN1A-216ENST00000637968 PSMG4Q5JS54 123 aa4.86□□□□□ -1.63
SCN1A-216ENST00000637968 WIPI1Q5MNZ9 446 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-216ENST00000637968 ARL17AQ8IVW1 177 aa4.86□□□□□ -1.63
SCN1A-216ENST00000637968 ZADH2Q8N4Q0 377 aa4.86□□□□□ -1.63
SCN1A-216ENST00000637968 ZNF525Q8N782 197 aa4.86□□□□□ -1.63
SCN1A-216ENST00000637968 GATAD1Q8WUU5 269 aa4.86□□□□□ -1.63
SCN1A-216ENST00000637968 JMJD8Q96S16 334 aa4.86□□□□□ -1.63
SCN1A-216ENST00000637968 CRISPLD2Q9H0B8 497 aa4.86□□□□□ -1.63
SCN1A-216ENST00000637968 CACNG5Q9UF02 275 aa4.86□□□□□ -1.63
SCN1A-216ENST00000637968 COA3Q9Y2R0 106 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-216ENST00000637968 KLF12Q9Y4X4 402 aa4.86□□□□□ -1.63
SCN1A-216ENST00000637968 PRRC2BQ5JSZ5 2229 aaKnown RBP4.86□□□□□ -1.63
SCN1A-216ENST00000637968 FAM90A27PA6NNH2 459 aa4.86□□□□□ -1.63
SCN1A-216ENST00000637968 F5H768 121 aa4.86□□□□□ -1.63
SCN1A-216ENST00000637968 TNFRSF6BO95407 300 aa4.86□□□□□ -1.63
SCN1A-216ENST00000637968 SP9P0CG40 484 aa4.86□□□□□ -1.63
SCN1A-216ENST00000637968 CX3CL1P78423 397 aa4.86□□□□□ -1.63
SCN1A-216ENST00000637968 MRPL58Q14197 206 aaKnown RBP4.86□□□□□ -1.63
SCN1A-216ENST00000637968 FXYD3Q14802 87 aa4.86□□□□□ -1.63
SCN1A-216ENST00000637968 ABHD17BQ5VST6 288 aa4.86□□□□□ -1.63
SCN1A-216ENST00000637968 Q6ZSR6 202 aa4.86□□□□□ -1.63
SCN1A-216ENST00000637968 OR4C13Q8NGP0 309 aa4.86□□□□□ -1.63
SCN1A-216ENST00000637968 OR2A1Q8NGT9 310 aa4.86□□□□□ -1.63
SCN1A-216ENST00000637968 SSC4DQ8WTU2 575 aa4.86□□□□□ -1.63
SCN1A-216ENST00000637968 A0A0A6YYD5 115 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 PRSS37A4D1T9 235 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 IZUMO1RA6ND01 250 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 SMAD7O15105 426 aaKnown RBP4.85□□□□□ -1.63
SCN1A-216ENST00000637968 EML2O95834 649 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 CSN3P07498 182 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 FCGR2BP31994 310 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-216ENST00000637968 EDDM3BP56851 147 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 RPL27P61353 136 aaKnown RBP4.85□□□□□ -1.63
SCN1A-216ENST00000637968 SRSF1Q07955 248 aaKnown RBP eCLIP4.85□□□□□ -1.63
SCN1A-216ENST00000637968 ZNF141Q15928 474 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 C9orf153Q5TBE3 101 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 C1orf53Q5VUE5 145 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 EBLN2Q6P2I7 272 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 BCL6BQ8N143 479 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-216ENST00000637968 LRRC75AQ8NAA5 344 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 OSR1Q8TAX0 266 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-216ENST00000637968 NEUROG1Q92886 237 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 AMELYQ99218 206 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 C20orf78Q9BR46 151 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 SSBP3Q9BWW4 388 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-216ENST00000637968 S1PR5Q9H228 398 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 HEYLQ9NQ87 328 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-216ENST00000637968 TMEM202A6NGA9 273 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 H3BMG7 143 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 MT-CO3P00414 261 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 PPYP01298 95 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 CXCL10P02778 98 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 GP1BBP13224 206 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 EVI2AP22794 236 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 PDCD1Q15116 288 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 SLC23A3Q6PIS1 610 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 LILRA3Q8N6C8 439 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-216ENST00000637968 OR1L1Q8NH94 360 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 GLMPQ8WWB7 406 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 PPDPFQ9H3Y8 114 aa4.85□□□□□ -1.63
SCN1A-216ENST00000637968 MAP1BP46821 2468 aaKnown RBP4.85□□□□□ -1.63
SCN1A-216ENST00000637968 RALGAPA2Q2PPJ7 1873 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms