RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 DYSFO75923 2080 aa15.07■□□□□ 0
CLN3-263ENST00000637871 SAA2-SAA4A0A096LPE2 208 aa15.06■□□□□ 0
CLN3-263ENST00000637871 C17orf112F2Z3M2 114 aa15.06■□□□□ 0
CLN3-263ENST00000637871 HSPB1P04792 205 aaKnown RBP15.06■□□□□ 0
CLN3-263ENST00000637871 SAA2P0DJI9 122 aaPredicted RBP15.06■□□□□ 0
CLN3-263ENST00000637871 NFYBP25208 207 aa15.06■□□□□ 0
CLN3-263ENST00000637871 TAGLN2P37802 199 aaKnown RBP15.06■□□□□ 0
CLN3-263ENST00000637871 PPT1P50897 306 aa15.06■□□□□ 0
CLN3-263ENST00000637871 RTL8BQ17RB0 113 aa15.06■□□□□ 0
CLN3-263ENST00000637871 ZNF506Q5JVG8 444 aa15.06■□□□□ 0
CLN3-263ENST00000637871 LYG1Q8N1E2 194 aa15.06■□□□□ 0
CLN3-263ENST00000637871 OR10G4Q8NGN3 311 aa15.06■□□□□ 0
CLN3-263ENST00000637871 CSMD1Q96PZ7 3565 aa15.06■□□□□ 0
CLN3-263ENST00000637871 MPDU1O75352 247 aa15.06■□□□□ 0
CLN3-263ENST00000637871 OR9G9P0C7N8 305 aa15.06■□□□□ 0
CLN3-263ENST00000637871 RELBQ01201 579 aa15.06■□□□□ 0
CLN3-263ENST00000637871 LINC00311Q8N616 119 aa15.06■□□□□ 0
CLN3-263ENST00000637871 SFT2D1Q8WV19 159 aa15.06■□□□□ 0
CLN3-263ENST00000637871 CCL17Q92583 94 aa15.06■□□□□ 0
CLN3-263ENST00000637871 ITPR2Q14571 2701 aa15.05■□□□□ 0
CLN3-263ENST00000637871 GPR37O15354 613 aa15.05■□□□□ -0
CLN3-263ENST00000637871 SLC31A2O15432 143 aa15.05■□□□□ -0
CLN3-263ENST00000637871 ARG1P05089 322 aa15.05■□□□□ -0
CLN3-263ENST00000637871 RAB11AP62491 216 aa15.05■□□□□ -0
CLN3-263ENST00000637871 OR8G2PQ6IF36 304 aa15.05■□□□□ -0
CLN3-263ENST00000637871 ZNF709Q8N972 641 aa15.05■□□□□ -0
CLN3-263ENST00000637871 ZNF596Q8TC21 504 aa15.05■□□□□ -0
CLN3-263ENST00000637871 QTRT1Q9BXR0 403 aaKnown RBP15.05■□□□□ -0
CLN3-263ENST00000637871 TMEM140Q9NV12 185 aa15.05■□□□□ -0
CLN3-263ENST00000637871 FKBP11Q9NYL4 201 aa15.05■□□□□ -0
CLN3-263ENST00000637871 PRNDQ9UKY0 176 aa15.05■□□□□ -0
CLN3-263ENST00000637871 FOXA2Q9Y261 457 aaPredicted RBP15.05■□□□□ -0
CLN3-263ENST00000637871 DSCAMO60469 2012 aa15.04■□□□□ -0
CLN3-263ENST00000637871 TRBV23-1A0A0A0MS06 115 aa15.04■□□□□ -0
CLN3-263ENST00000637871 IGHV1-69-2A0A0G2JMI3 117 aa15.04■□□□□ -0
CLN3-263ENST00000637871 C9JQL5 133 aa15.04■□□□□ -0
CLN3-263ENST00000637871 GOSR1O95249 250 aa15.04■□□□□ -0
CLN3-263ENST00000637871 IFNA1P01562 189 aa15.04■□□□□ -0
CLN3-263ENST00000637871 PAX6P26367 422 aa15.04■□□□□ -0
CLN3-263ENST00000637871 HFEQ30201 348 aa15.04■□□□□ -0
CLN3-263ENST00000637871 DUX4L9Q6RFH8 374 aaPredicted RBP15.04■□□□□ -0
CLN3-263ENST00000637871 RPRMQ9NS64 109 aa15.04■□□□□ -0
CLN3-263ENST00000637871 ZNF257Q9Y2Q1 563 aa15.04■□□□□ -0
CLN3-263ENST00000637871 SETXQ7Z333 2677 aaKnown RBP15.04■□□□□ -0
CLN3-263ENST00000637871 MEX3AA1L020 520 aaKnown RBP15.03■□□□□ -0
CLN3-263ENST00000637871 C15orf61A6NNL5 157 aa15.03■□□□□ -0
CLN3-263ENST00000637871 SOD3P08294 240 aa15.03■□□□□ -0
CLN3-263ENST00000637871 HSPE1P61604 102 aaKnown RBP15.03■□□□□ -0
CLN3-263ENST00000637871 SOHLH1Q5JUK2 328 aa15.03■□□□□ -0
CLN3-263ENST00000637871 ZNF833PQ6ZTB9 187 aa15.03■□□□□ -0
CLN3-263ENST00000637871 RHOVQ96L33 236 aa15.03■□□□□ -0
CLN3-263ENST00000637871 RSG1Q9BU20 258 aa15.03■□□□□ -0
CLN3-263ENST00000637871 TUBA4BQ9H853 241 aa15.03■□□□□ -0
CLN3-263ENST00000637871 SMCO4Q9NRQ5 59 aa15.03■□□□□ -0
CLN3-263ENST00000637871 SPG11Q96JI7 2443 aa15.03■□□□□ -0
CLN3-263ENST00000637871 UBE2L5PA0A1B0GUS4 154 aa15.03■□□□□ -0
CLN3-263ENST00000637871 FAM74A7A6NL05 159 aa15.03■□□□□ -0
CLN3-263ENST00000637871 VDAC2P45880 294 aaPredicted RBP15.03■□□□□ -0
CLN3-263ENST00000637871 OR2B8PP59922 312 aa15.03■□□□□ -0
CLN3-263ENST00000637871 RHEBQ15382 184 aa15.03■□□□□ -0
CLN3-263ENST00000637871 FAM74A3Q4VXF1 159 aa15.03■□□□□ -0
CLN3-263ENST00000637871 TMEM200BQ69YZ2 307 aa15.03■□□□□ -0
CLN3-263ENST00000637871 ZNF383Q8NA42 475 aa15.03■□□□□ -0
CLN3-263ENST00000637871 OSR1Q8TAX0 266 aaPredicted RBP15.03■□□□□ -0
CLN3-263ENST00000637871 TMEM186Q96B77 213 aa15.03■□□□□ -0
CLN3-263ENST00000637871 ENY2Q9NPA8 101 aa15.03■□□□□ -0
CLN3-263ENST00000637871 HEYLQ9NQ87 328 aaPredicted RBP15.03■□□□□ -0
CLN3-263ENST00000637871 DCAF16Q9NXF7 216 aa15.03■□□□□ -0
CLN3-263ENST00000637871 USF3Q68DE3 2245 aa15.02■□□□□ -0
CLN3-263ENST00000637871 A0A087X0M5 115 aa15.02□□□□□ -0.01
CLN3-263ENST00000637871 A0A1B0GX30 115 aa15.02□□□□□ -0.01
CLN3-263ENST00000637871 C15orf62A8K5M9 175 aa15.02□□□□□ -0.01
CLN3-263ENST00000637871 APOA2P02652 100 aa15.02□□□□□ -0.01
CLN3-263ENST00000637871 IL6RP08887 468 aaPredicted RBP15.02□□□□□ -0.01
CLN3-263ENST00000637871 MDKP21741 143 aaPredicted RBP15.02□□□□□ -0.01
CLN3-263ENST00000637871 NPBWR1P48145 328 aa15.02□□□□□ -0.01
CLN3-263ENST00000637871 PPOXP50336 477 aa15.02□□□□□ -0.01
CLN3-263ENST00000637871 LINC00205P59089 165 aa15.02□□□□□ -0.01
CLN3-263ENST00000637871 DLK1P80370 383 aa15.02□□□□□ -0.01
CLN3-263ENST00000637871 RBMS3Q6XE24 437 aaKnown RBP15.02□□□□□ -0.01
CLN3-263ENST00000637871 CLDND2Q8NHS1 167 aa15.02□□□□□ -0.01
CLN3-263ENST00000637871 ZDHHC16Q969W1 377 aa15.02□□□□□ -0.01
CLN3-263ENST00000637871 P2RX4Q99571 388 aa15.02□□□□□ -0.01
CLN3-263ENST00000637871 KCNIP2Q9NS61 270 aa15.02□□□□□ -0.01
CLN3-263ENST00000637871 SLC35D1Q9NTN3 355 aa15.02□□□□□ -0.01
CLN3-263ENST00000637871 TMEM14BQ9NUH8 114 aa15.02□□□□□ -0.01
CLN3-263ENST00000637871 TCF19Q9Y242 345 aa15.02□□□□□ -0.01
CLN3-263ENST00000637871 TANC2Q9HCD6 1990 aa15.01□□□□□ -0.01
CLN3-263ENST00000637871 LOC105371267A0A1B0GV96 52 aa15.01□□□□□ -0.01
CLN3-263ENST00000637871 A0A1W2PPH5 198 aa15.01□□□□□ -0.01
CLN3-263ENST00000637871 FNDC10F2Z333 226 aa15.01□□□□□ -0.01
CLN3-263ENST00000637871 IFNA10P01566 189 aa15.01□□□□□ -0.01
CLN3-263ENST00000637871 ATF4P18848 351 aaPredicted RBP15.01□□□□□ -0.01
CLN3-263ENST00000637871 FGF7P21781 194 aa15.01□□□□□ -0.01
CLN3-263ENST00000637871 TGIF2LYQ8IUE0 185 aa15.01□□□□□ -0.01
CLN3-263ENST00000637871 ZCCHC24Q8N2G6 241 aaKnown RBP15.01□□□□□ -0.01
CLN3-263ENST00000637871 MUC15Q8N387 334 aa15.01□□□□□ -0.01
CLN3-263ENST00000637871 TNFRSF14Q92956 283 aa15.01□□□□□ -0.01
CLN3-263ENST00000637871 DSCAML1Q8TD84 2053 aa15.01□□□□□ -0.01
CLN3-263ENST00000637871 CCL20P78556 96 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms