RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 FBXO7Q9Y3I1 522 aa14.28□□□□□ -0.12
CLN3-259ENST00000637551 V9GYH0 126 aa14.28□□□□□ -0.12
CLN3-259ENST00000637551 CMYA5Q8N3K9 4069 aa14.27□□□□□ -0.12
CLN3-259ENST00000637551 G3V318 75 aa14.27□□□□□ -0.13
CLN3-259ENST00000637551 M0QYG6 137 aa14.27□□□□□ -0.13
CLN3-259ENST00000637551 ARPC1BO15143 372 aaKnown RBP14.27□□□□□ -0.13
CLN3-259ENST00000637551 TNFSF12O43508 249 aa14.27□□□□□ -0.13
CLN3-259ENST00000637551 RLN1P04808 185 aa14.27□□□□□ -0.13
CLN3-259ENST00000637551 IL6RP08887 468 aaPredicted RBP14.27□□□□□ -0.13
CLN3-259ENST00000637551 FAUP35544 74 aaKnown RBP14.27□□□□□ -0.13
CLN3-259ENST00000637551 MYCNOSP40205 109 aa14.27□□□□□ -0.13
CLN3-259ENST00000637551 ECSCRQ19T08 205 aa14.27□□□□□ -0.13
CLN3-259ENST00000637551 KHDC1LQ5JSQ8 128 aa14.27□□□□□ -0.13
CLN3-259ENST00000637551 UNQ5815/PRO19632Q6UWF5 114 aa14.27□□□□□ -0.13
CLN3-259ENST00000637551 SLC25A42Q86VD7 318 aa14.27□□□□□ -0.13
CLN3-259ENST00000637551 OR51H1Q8NH63 302 aa14.27□□□□□ -0.13
CLN3-259ENST00000637551 ABHD5Q8WTS1 349 aa14.27□□□□□ -0.13
CLN3-259ENST00000637551 SRSF12Q8WXF0 261 aaKnown RBP14.27□□□□□ -0.13
CLN3-259ENST00000637551 RBMXL1Q96E39 390 aaKnown RBP14.27□□□□□ -0.13
CLN3-259ENST00000637551 VSIG4Q9Y279 399 aa14.27□□□□□ -0.13
CLN3-259ENST00000637551 RAMP3O60896 148 aa14.26□□□□□ -0.13
CLN3-259ENST00000637551 RPLP1P05386 114 aaKnown RBP14.26□□□□□ -0.13
CLN3-259ENST00000637551 RAB9AP51151 201 aa14.26□□□□□ -0.13
CLN3-259ENST00000637551 ERVK-16P61578 105 aa14.26□□□□□ -0.13
CLN3-259ENST00000637551 RPL8P62917 257 aaKnown RBP14.26□□□□□ -0.13
CLN3-259ENST00000637551 FAM209BQ5JX69 171 aa14.26□□□□□ -0.13
CLN3-259ENST00000637551 CCDC71LQ8N9Z2 235 aa14.26□□□□□ -0.13
CLN3-259ENST00000637551 LFNGQ8NES3 379 aa14.26□□□□□ -0.13
CLN3-259ENST00000637551 SCGB3A2Q96PL1 93 aa14.26□□□□□ -0.13
CLN3-259ENST00000637551 TSC22D3Q99576 134 aa14.26□□□□□ -0.13
CLN3-259ENST00000637551 GPR61Q9BZJ8 451 aa14.26□□□□□ -0.13
CLN3-259ENST00000637551 SCP2D1Q9UJQ7 156 aa14.26□□□□□ -0.13
CLN3-259ENST00000637551 WSB1Q9Y6I7 421 aa14.26□□□□□ -0.13
CLN3-259ENST00000637551 A0A1W2PN81 502 aa14.25□□□□□ -0.13
CLN3-259ENST00000637551 DPPA5A6NC42 116 aa14.25□□□□□ -0.13
CLN3-259ENST00000637551 MARCH11A6NNE9 402 aa14.25□□□□□ -0.13
CLN3-259ENST00000637551 PF4P02776 101 aa14.25□□□□□ -0.13
CLN3-259ENST00000637551 CTSDP07339 412 aaPredicted RBP14.25□□□□□ -0.13
CLN3-259ENST00000637551 ZNF735P0CB33 412 aa14.25□□□□□ -0.13
CLN3-259ENST00000637551 CHRNA7P36544 502 aa14.25□□□□□ -0.13
CLN3-259ENST00000637551 PJVKQ0ZLH3 352 aa14.25□□□□□ -0.13
CLN3-259ENST00000637551 OR2B11Q5JQS5 317 aa14.25□□□□□ -0.13
CLN3-259ENST00000637551 OR4A47Q6IF82 309 aa14.25□□□□□ -0.13
CLN3-259ENST00000637551 HSD17B13Q7Z5P4 300 aaPredicted RBP14.25□□□□□ -0.13
CLN3-259ENST00000637551 Q8N402 240 aa14.25□□□□□ -0.13
CLN3-259ENST00000637551 ZNF491Q8N8L2 437 aa14.25□□□□□ -0.13
CLN3-259ENST00000637551 KLHL30-AS1Q8NEE0 82 aa14.25□□□□□ -0.13
CLN3-259ENST00000637551 OR4C16Q8NGL9 310 aa14.25□□□□□ -0.13
CLN3-259ENST00000637551 OR6Q1Q8NGQ2 317 aa14.25□□□□□ -0.13
CLN3-259ENST00000637551 GRPEL2Q8TAA5 225 aa14.25□□□□□ -0.13
CLN3-259ENST00000637551 FAM110DQ8TAY7 271 aaPredicted RBP14.25□□□□□ -0.13
CLN3-259ENST00000637551 TRIM63Q969Q1 353 aa14.25□□□□□ -0.13
CLN3-259ENST00000637551 CLCC1Q96S66 551 aa14.25□□□□□ -0.13
CLN3-259ENST00000637551 P2RX4Q99571 388 aa14.25□□□□□ -0.13
CLN3-259ENST00000637551 THAP7Q9BT49 309 aaPredicted RBP14.25□□□□□ -0.13
CLN3-259ENST00000637551 NBEAL2Q6ZNJ1 2754 aa14.24□□□□□ -0.13
CLN3-259ENST00000637551 A0A0G2JLM5 398 aa14.24□□□□□ -0.13
CLN3-259ENST00000637551 NUDT19A8MXV4 375 aa14.24□□□□□ -0.13
CLN3-259ENST00000637551 H0Y980 276 aa14.24□□□□□ -0.13
CLN3-259ENST00000637551 MPPED1O15442 326 aa14.24□□□□□ -0.13
CLN3-259ENST00000637551 SOX15O60248 233 aa14.24□□□□□ -0.13
CLN3-259ENST00000637551 ATG12O94817 140 aa14.24□□□□□ -0.13
CLN3-259ENST00000637551 FHL3Q13643 280 aa14.24□□□□□ -0.13
CLN3-259ENST00000637551 KIAA0141Q14154 515 aaPredicted RBP14.24□□□□□ -0.13
CLN3-259ENST00000637551 ZNF79Q15937 498 aa14.24□□□□□ -0.13
CLN3-259ENST00000637551 TNXAQ16473 311 aa14.24□□□□□ -0.13
CLN3-259ENST00000637551 KLK9Q2XQG4 91 aa14.24□□□□□ -0.13
CLN3-259ENST00000637551 RNASE12Q5GAN4 147 aaKnown RBP14.24□□□□□ -0.13
CLN3-259ENST00000637551 GDPD1Q8N9F7 314 aa14.24□□□□□ -0.13
CLN3-259ENST00000637551 OR4D10Q8NGI6 311 aa14.24□□□□□ -0.13
CLN3-259ENST00000637551 RCC1LQ96I51 464 aaKnown RBP14.24□□□□□ -0.13
CLN3-259ENST00000637551 KLK9Q9UKQ9 250 aa14.24□□□□□ -0.13
CLN3-259ENST00000637551 PIGBOS1A0A0B4J2F0 54 aa14.23□□□□□ -0.13
CLN3-259ENST00000637551 HLA-GP17693 338 aa14.23□□□□□ -0.13
CLN3-259ENST00000637551 GNB1P62873 340 aa14.23□□□□□ -0.13
CLN3-259ENST00000637551 ZNF585BQ52M93 769 aa14.23□□□□□ -0.13
CLN3-259ENST00000637551 IDO2Q6ZQW0 420 aa14.23□□□□□ -0.13
CLN3-259ENST00000637551 TBC1D26Q86UD7 250 aa14.23□□□□□ -0.13
CLN3-259ENST00000637551 USMG5Q96IX5 58 aa14.23□□□□□ -0.13
CLN3-259ENST00000637551 MCRIP2Q9BUT9 160 aaKnown RBP14.23□□□□□ -0.13
CLN3-259ENST00000637551 FKBP11Q9NYL4 201 aa14.23□□□□□ -0.13
CLN3-259ENST00000637551 ZNF257Q9Y2Q1 563 aa14.23□□□□□ -0.13
CLN3-259ENST00000637551 A0A1W2PRX2 142 aa14.22□□□□□ -0.13
CLN3-259ENST00000637551 NPIPB5A8MRT5 1133 aa14.22□□□□□ -0.13
CLN3-259ENST00000637551 I3L521 148 aa14.22□□□□□ -0.13
CLN3-259ENST00000637551 S1PR2O95136 353 aa14.22□□□□□ -0.13
CLN3-259ENST00000637551 OR9G9P0C7N8 305 aa14.22□□□□□ -0.13
CLN3-259ENST00000637551 PGAM2P15259 253 aa14.22□□□□□ -0.13
CLN3-259ENST00000637551 RPL27AP46776 148 aaKnown RBP14.22□□□□□ -0.13
CLN3-259ENST00000637551 PIGPP57054 158 aa14.22□□□□□ -0.13
CLN3-259ENST00000637551 PHLDA2Q53GA4 152 aa14.22□□□□□ -0.13
CLN3-259ENST00000637551 PYDC2Q56P42 97 aa14.22□□□□□ -0.13
CLN3-259ENST00000637551 ETV3LQ6ZN32 361 aa14.22□□□□□ -0.13
CLN3-259ENST00000637551 TTC9CQ8N5M4 171 aa14.22□□□□□ -0.13
CLN3-259ENST00000637551 LINC00482Q8N8I6 264 aa14.22□□□□□ -0.13
CLN3-259ENST00000637551 DMBX1Q8NFW5 382 aa14.22□□□□□ -0.13
CLN3-259ENST00000637551 GPHA2Q96T91 129 aa14.22□□□□□ -0.13
CLN3-259ENST00000637551 FAM103A1Q9BTL3 118 aaKnown RBP14.22□□□□□ -0.13
CLN3-259ENST00000637551 TMEM140Q9NV12 185 aa14.22□□□□□ -0.13
CLN3-259ENST00000637551 COPZ2Q9P299 210 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms