RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 OPN1MW2P0DN77 364 aa16.17■□□□□ 0.18
CLN3-250ENST00000636839 OPN1MW3P0DN78 364 aa16.17■□□□□ 0.18
CLN3-250ENST00000636839 IGHV4-38-2P0DP08 117 aa16.17■□□□□ 0.18
CLN3-250ENST00000636839 S100A11P31949 105 aa16.17■□□□□ 0.18
CLN3-250ENST00000636839 MC5RP33032 325 aa16.17■□□□□ 0.18
CLN3-250ENST00000636839 HNF4GQ14541 408 aa16.17■□□□□ 0.18
CLN3-250ENST00000636839 POU2AF1Q16633 256 aa16.17■□□□□ 0.18
CLN3-250ENST00000636839 LINC01356Q8N9X3 169 aa16.17■□□□□ 0.18
CLN3-250ENST00000636839 OR4A16Q8NH70 328 aa16.17■□□□□ 0.18
CLN3-250ENST00000636839 OSR1Q8TAX0 266 aaPredicted RBP16.17■□□□□ 0.18
CLN3-250ENST00000636839 CFHR4Q92496 578 aa16.17■□□□□ 0.18
CLN3-250ENST00000636839 TPSG1Q9NRR2 321 aa16.17■□□□□ 0.18
CLN3-250ENST00000636839 HSPB7Q9UBY9 170 aa16.17■□□□□ 0.18
CLN3-250ENST00000636839 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP16.17■□□□□ 0.187e-9■■□□□ 13.5
CLN3-250ENST00000636839 TRAV40A0A0B4J280 105 aa16.16■□□□□ 0.18
CLN3-250ENST00000636839 SYNGR2O43760 224 aa16.16■□□□□ 0.18
CLN3-250ENST00000636839 TGFAP01135 160 aa16.16■□□□□ 0.18
CLN3-250ENST00000636839 IL6RP08887 468 aaPredicted RBP16.16■□□□□ 0.18
CLN3-250ENST00000636839 RPL12P30050 165 aaKnown RBP16.16■□□□□ 0.18
CLN3-250ENST00000636839 UBE2KP61086 200 aa16.16■□□□□ 0.18
CLN3-250ENST00000636839 PRSS57Q6UWY2 283 aa16.16■□□□□ 0.18
CLN3-250ENST00000636839 KCNRGQ8N5I3 272 aa16.16■□□□□ 0.18
CLN3-250ENST00000636839 NPFFO15130 113 aa16.16■□□□□ 0.18
CLN3-250ENST00000636839 IGHV4-31P0DP07 118 aa16.16■□□□□ 0.18
CLN3-250ENST00000636839 CEACAM3P40198 252 aa16.16■□□□□ 0.18
CLN3-250ENST00000636839 TET2Q6N021 2002 aaPredicted RBP16.15■□□□□ 0.18
CLN3-250ENST00000636839 SLC25A17O43808 307 aa16.15■□□□□ 0.18
CLN3-250ENST00000636839 VENTXO95231 258 aa16.15■□□□□ 0.18
CLN3-250ENST00000636839 CAV2P51636 162 aa16.15■□□□□ 0.18
CLN3-250ENST00000636839 NHLH2Q02577 135 aa16.15■□□□□ 0.18
CLN3-250ENST00000636839 PJVKQ0ZLH3 352 aa16.15■□□□□ 0.18
CLN3-250ENST00000636839 TMEM249Q2WGJ8 235 aa16.15■□□□□ 0.18
CLN3-250ENST00000636839 AQP10Q96PS8 301 aa16.15■□□□□ 0.18
CLN3-250ENST00000636839 ITPR3Q14573 2671 aa16.15■□□□□ 0.18
CLN3-250ENST00000636839 IGSF23A1L1A6 192 aa16.14■□□□□ 0.17
CLN3-250ENST00000636839 UPK2O00526 184 aa16.14■□□□□ 0.17
CLN3-250ENST00000636839 TXNL1O43396 289 aa16.14■□□□□ 0.17
CLN3-250ENST00000636839 OR2F1Q13607 317 aa16.14■□□□□ 0.17
CLN3-250ENST00000636839 PUSL1Q8N0Z8 303 aaKnown RBP16.14■□□□□ 0.17
CLN3-250ENST00000636839 ZFP57Q9NU63 452 aa16.14■□□□□ 0.17
CLN3-250ENST00000636839 IFNA17P01571 189 aa16.14■□□□□ 0.17
CLN3-250ENST00000636839 VAMP2P63027 116 aa16.14■□□□□ 0.17
CLN3-250ENST00000636839 ZNF345Q14585 488 aa16.14■□□□□ 0.17
CLN3-250ENST00000636839 MINOS1Q5TGZ0 78 aa16.14■□□□□ 0.17
CLN3-250ENST00000636839 SMIM3Q9BZL3 60 aa16.14■□□□□ 0.17
CLN3-250ENST00000636839 ZC4H2Q9NQZ6 224 aa16.14■□□□□ 0.17
CLN3-250ENST00000636839 MINOS1-NBL1R4GNA1 71 aa16.14■□□□□ 0.17
CLN3-250ENST00000636839 AKAP9Q99996 3911 aa16.14■□□□□ 0.17
CLN3-250ENST00000636839 TRAV20A0A0B4J274 112 aa16.13■□□□□ 0.17
CLN3-250ENST00000636839 IGHV1-69DA0A0B4J2H0 117 aa16.13■□□□□ 0.17
CLN3-250ENST00000636839 C15orf61A6NNL5 157 aa16.13■□□□□ 0.17
CLN3-250ENST00000636839 CFDP00746 253 aaPredicted RBP16.13■□□□□ 0.17
CLN3-250ENST00000636839 IGKV1D-33P01593 117 aa16.13■□□□□ 0.17
CLN3-250ENST00000636839 IGKV1-33P01594 117 aa16.13■□□□□ 0.17
CLN3-250ENST00000636839 IGHV1-69P01742 117 aa16.13■□□□□ 0.17
CLN3-250ENST00000636839 P2RY1P47900 373 aa16.13■□□□□ 0.17
CLN3-250ENST00000636839 F2RL1P55085 397 aa16.13■□□□□ 0.17
CLN3-250ENST00000636839 MRGPRG-AS1Q2M3A8 158 aa16.13■□□□□ 0.17
CLN3-250ENST00000636839 KLF17Q5JT82 389 aaPredicted RBP16.13■□□□□ 0.17
CLN3-250ENST00000636839 FAM120AOSQ5T036 256 aa16.13■□□□□ 0.17
CLN3-250ENST00000636839 OR2C3Q8N628 320 aa16.13■□□□□ 0.17
CLN3-250ENST00000636839 TMEM14BQ9NUH8 114 aa16.13■□□□□ 0.17
CLN3-250ENST00000636839 PLXNB1O43157 2135 aa16.13■□□□□ 0.17
CLN3-250ENST00000636839 A0A0D9SG52 128 aa16.12■□□□□ 0.17
CLN3-250ENST00000636839 FAM90A9PA6NNJ1 464 aa16.12■□□□□ 0.17
CLN3-250ENST00000636839 SNAPC5O75971 98 aa16.12■□□□□ 0.17
CLN3-250ENST00000636839 KBTBD11O94819 623 aa16.12■□□□□ 0.17
CLN3-250ENST00000636839 AARDQ4LEZ3 155 aa16.12■□□□□ 0.17
CLN3-250ENST00000636839 OR8H3Q8N146 312 aa16.12■□□□□ 0.17
CLN3-250ENST00000636839 TEX15Q9BXT5 2789 aa16.12■□□□□ 0.17
CLN3-250ENST00000636839 E7EUB6 86 aa16.12■□□□□ 0.17
CLN3-250ENST00000636839 CST7O76096 145 aa16.12■□□□□ 0.17
CLN3-250ENST00000636839 SNRNP70P08621 437 aaKnown RBP16.12■□□□□ 0.17
CLN3-250ENST00000636839 HABP2Q14520 560 aaPredicted RBP16.12■□□□□ 0.17
CLN3-250ENST00000636839 TMEM252Q8N6L7 170 aa16.12■□□□□ 0.17
CLN3-250ENST00000636839 LYRM2Q9NU23 88 aaPredicted RBP16.12■□□□□ 0.17
CLN3-250ENST00000636839 BET1LQ9NYM9 111 aa16.12■□□□□ 0.17
CLN3-250ENST00000636839 TBL2Q9Y4P3 447 aaKnown RBP16.12■□□□□ 0.17
CLN3-250ENST00000636839 OR51B2Q9Y5P1 312 aa16.12■□□□□ 0.17
CLN3-250ENST00000636839 CEBPZOSA8MTT3 80 aa16.11■□□□□ 0.17
CLN3-250ENST00000636839 FAM90A26D6RGX4 464 aa16.11■□□□□ 0.17
CLN3-250ENST00000636839 PVALBP20472 110 aaPredicted RBP16.11■□□□□ 0.17
CLN3-250ENST00000636839 NUP62P37198 522 aaPredicted RBP16.11■□□□□ 0.17
CLN3-250ENST00000636839 TMEM267Q0VDI3 215 aaPredicted RBP16.11■□□□□ 0.17
CLN3-250ENST00000636839 PSG5Q15238 335 aa16.11■□□□□ 0.17
CLN3-250ENST00000636839 C10orf55Q5SWW7 151 aa16.11■□□□□ 0.17
CLN3-250ENST00000636839 DTD1Q8TEA8 209 aa16.11■□□□□ 0.17
CLN3-250ENST00000636839 MALSU1Q96EH3 234 aa16.11■□□□□ 0.17
CLN3-250ENST00000636839 CLCC1Q96S66 551 aa16.11■□□□□ 0.17
CLN3-250ENST00000636839 ZNF430Q9H8G1 570 aaPredicted RBP16.11■□□□□ 0.17
CLN3-250ENST00000636839 PSENENQ9NZ42 101 aa16.11■□□□□ 0.17
CLN3-250ENST00000636839 FOXA2Q9Y261 457 aaPredicted RBP16.11■□□□□ 0.17
CLN3-250ENST00000636839 ABCA1O95477 2261 aa16.11■□□□□ 0.17
CLN3-250ENST00000636839 CREBBPQ92793 2442 aa16.11■□□□□ 0.17
CLN3-250ENST00000636839 CSPG4Q6UVK1 2322 aa16.11■□□□□ 0.17
CLN3-250ENST00000636839 SMAD7O15105 426 aaKnown RBP16.11■□□□□ 0.17
CLN3-250ENST00000636839 CD1BP29016 333 aa16.11■□□□□ 0.17
CLN3-250ENST00000636839 EWSR1Q01844 656 aaKnown RBP eCLIP16.11■□□□□ 0.17
CLN3-250ENST00000636839 HES1Q14469 280 aa16.11■□□□□ 0.17
CLN3-250ENST00000636839 SPANXN5Q5MJ07 72 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms