RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 SPATA2Q9UM82 520 aa12.17□□□□□ -0.46
CLN3-246ENST00000636228 PRELID3BQ9Y3B1 194 aa12.17□□□□□ -0.46
CLN3-246ENST00000636228 OR2W1Q9Y3N9 320 aa12.17□□□□□ -0.46
CLN3-246ENST00000636228 A0A1B0GW64 132 aa12.16□□□□□ -0.46
CLN3-246ENST00000636228 OR11H12B2RN74 326 aa12.16□□□□□ -0.46
CLN3-246ENST00000636228 AREGP15514 252 aa12.16□□□□□ -0.46
CLN3-246ENST00000636228 KIR2DS2P43631 304 aa12.16□□□□□ -0.46
CLN3-246ENST00000636228 KCTD12Q96CX2 325 aaKnown RBP12.16□□□□□ -0.46
CLN3-246ENST00000636228 DPPA5A6NC42 116 aa12.15□□□□□ -0.46
CLN3-246ENST00000636228 TMEM235A6NFC5 223 aa12.15□□□□□ -0.46
CLN3-246ENST00000636228 CREBL2O60519 120 aaPredicted RBP12.15□□□□□ -0.46
CLN3-246ENST00000636228 GGCTO75223 188 aaKnown RBP12.15□□□□□ -0.46
CLN3-246ENST00000636228 RPL27AP46776 148 aaKnown RBP12.15□□□□□ -0.46
CLN3-246ENST00000636228 HACD4Q5VWC8 232 aa12.15□□□□□ -0.46
CLN3-246ENST00000636228 CLEC19AQ6UXS0 136 aa12.15□□□□□ -0.46
CLN3-246ENST00000636228 SSX9Q7RTT3 188 aa12.15□□□□□ -0.46
CLN3-246ENST00000636228 SLC25A42Q86VD7 318 aa12.15□□□□□ -0.46
CLN3-246ENST00000636228 FANCD2OSQ96PS1 177 aa12.15□□□□□ -0.46
CLN3-246ENST00000636228 OR2A7Q96R45 310 aa12.15□□□□□ -0.46
CLN3-246ENST00000636228 CENPOQ9BU64 300 aa12.15□□□□□ -0.46
CLN3-246ENST00000636228 RAB26Q9ULW5 256 aa12.15□□□□□ -0.46
CLN3-246ENST00000636228 ZNF320A2RRD8 509 aa12.14□□□□□ -0.47
CLN3-246ENST00000636228 SSX5O60225 188 aa12.14□□□□□ -0.47
CLN3-246ENST00000636228 KBTBD11O94819 623 aa12.14□□□□□ -0.47
CLN3-246ENST00000636228 REG1AP05451 166 aa12.14□□□□□ -0.47
CLN3-246ENST00000636228 CTXN2P0C2S0 81 aa12.14□□□□□ -0.47
CLN3-246ENST00000636228 PTHLHP12272 177 aa12.14□□□□□ -0.47
CLN3-246ENST00000636228 CD36P16671 472 aa12.14□□□□□ -0.47
CLN3-246ENST00000636228 CBLN1P23435 193 aa12.14□□□□□ -0.47
CLN3-246ENST00000636228 ARL3P36405 182 aa12.14□□□□□ -0.47
CLN3-246ENST00000636228 EIF4EBP1Q13541 118 aaPredicted RBP12.14□□□□□ -0.47
CLN3-246ENST00000636228 CNIH2Q6PI25 160 aa12.14□□□□□ -0.47
CLN3-246ENST00000636228 LAX1Q8IWV1 398 aa12.14□□□□□ -0.47
CLN3-246ENST00000636228 PUSL1Q8N0Z8 303 aaKnown RBP12.14□□□□□ -0.47
CLN3-246ENST00000636228 MFSD4AQ8N468 514 aa12.14□□□□□ -0.47
CLN3-246ENST00000636228 TMEM167AQ8TBQ9 72 aa12.14□□□□□ -0.47
CLN3-246ENST00000636228 CCDC140Q96MF4 163 aa12.14□□□□□ -0.47
CLN3-246ENST00000636228 ZC4H2Q9NQZ6 224 aa12.14□□□□□ -0.47
CLN3-246ENST00000636228 SLC2A9Q9NRM0 540 aa12.14□□□□□ -0.47
CLN3-246ENST00000636228 TAS2R8Q9NYW2 309 aa12.14□□□□□ -0.47
CLN3-246ENST00000636228 ZNF257Q9Y2Q1 563 aa12.14□□□□□ -0.47
CLN3-246ENST00000636228 MRPS7Q9Y2R9 242 aaKnown RBP12.14□□□□□ -0.47
CLN3-246ENST00000636228 TNFSF12O43508 249 aa12.13□□□□□ -0.47
CLN3-246ENST00000636228 JTBO76095 146 aa12.13□□□□□ -0.47
CLN3-246ENST00000636228 ARL6IP1Q15041 203 aa12.13□□□□□ -0.47
CLN3-246ENST00000636228 OR4S2Q8NH73 311 aa12.13□□□□□ -0.47
CLN3-246ENST00000636228 DCSTAMPQ9H295 470 aa12.13□□□□□ -0.47
CLN3-246ENST00000636228 MLXQ9UH92 298 aa12.13□□□□□ -0.47
CLN3-246ENST00000636228 DAPK2Q9UIK4 370 aa12.13□□□□□ -0.47
CLN3-246ENST00000636228 TNCP24821 2201 aa12.13□□□□□ -0.47
CLN3-246ENST00000636228 NPIPB5A8MRT5 1133 aa12.12□□□□□ -0.47
CLN3-246ENST00000636228 LGALS9O00182 355 aa12.12□□□□□ -0.47
CLN3-246ENST00000636228 SLC22A5O76082 557 aa12.12□□□□□ -0.47
CLN3-246ENST00000636228 FCER2P06734 321 aa12.12□□□□□ -0.47
CLN3-246ENST00000636228 ZNF735P0CB33 412 aa12.12□□□□□ -0.47
CLN3-246ENST00000636228 PSMB6P28072 239 aa12.12□□□□□ -0.47
CLN3-246ENST00000636228 GNG2P59768 71 aa12.12□□□□□ -0.47
CLN3-246ENST00000636228 GPHB5Q86YW7 130 aa12.12□□□□□ -0.47
CLN3-246ENST00000636228 TMEM61Q8N0U2 210 aa12.12□□□□□ -0.47
CLN3-246ENST00000636228 VSTM2AQ8TAG5 236 aa12.12□□□□□ -0.47
CLN3-246ENST00000636228 HSD17B10Q99714 261 aaKnown RBP12.12□□□□□ -0.47
CLN3-246ENST00000636228 CCL28Q9NRJ3 127 aa12.12□□□□□ -0.47
CLN3-246ENST00000636228 TXNL4BQ9NX01 149 aaKnown RBP12.12□□□□□ -0.47
CLN3-246ENST00000636228 TECRQ9NZ01 308 aaKnown RBP12.12□□□□□ -0.47
CLN3-246ENST00000636228 ANXA10Q9UJ72 324 aa12.12□□□□□ -0.47
CLN3-246ENST00000636228 TMEM213A2RRL7 107 aa12.11□□□□□ -0.47
CLN3-246ENST00000636228 CGB1A6NKQ9 187 aa12.11□□□□□ -0.47
CLN3-246ENST00000636228 NOTOA8MTQ0 251 aa12.11□□□□□ -0.47
CLN3-246ENST00000636228 SCAF4O95104 1147 aaKnown RBP12.11□□□□□ -0.47
CLN3-246ENST00000636228 CRYGCP07315 174 aa12.11□□□□□ -0.47
CLN3-246ENST00000636228 ZNF57Q68EA5 555 aaPredicted RBP12.11□□□□□ -0.47
CLN3-246ENST00000636228 UXS1Q8NBZ7 420 aa12.11□□□□□ -0.47
CLN3-246ENST00000636228 IL17DQ8TAD2 202 aa12.11□□□□□ -0.47
CLN3-246ENST00000636228 SECTM1Q8WVN6 248 aa12.11□□□□□ -0.47
CLN3-246ENST00000636228 IGHV3-35A0A0C4DH35 117 aa12.1□□□□□ -0.47
CLN3-246ENST00000636228 MFSD2BA6NFX1 497 aa12.1□□□□□ -0.47
CLN3-246ENST00000636228 CLEC3BP05452 202 aa12.1□□□□□ -0.47
CLN3-246ENST00000636228 DEFA4P12838 97 aa12.1□□□□□ -0.47
CLN3-246ENST00000636228 CTRB1P17538 263 aa12.1□□□□□ -0.47
CLN3-246ENST00000636228 PSMB9P28065 219 aa12.1□□□□□ -0.47
CLN3-246ENST00000636228 MAS1LP35410 378 aa12.1□□□□□ -0.47
CLN3-246ENST00000636228 FAM106AQ4KMX7 169 aa12.1□□□□□ -0.47
CLN3-246ENST00000636228 TM4SF20Q53R12 229 aa12.1□□□□□ -0.47
CLN3-246ENST00000636228 CTRB2Q6GPI1 263 aa12.1□□□□□ -0.47
CLN3-246ENST00000636228 UNQ9165/PRO28630Q6UXU0 137 aa12.1□□□□□ -0.47
CLN3-246ENST00000636228 ZNF66Q6ZN08 573 aa12.1□□□□□ -0.47
CLN3-246ENST00000636228 SLC16A13Q7RTY0 426 aa12.1□□□□□ -0.47
CLN3-246ENST00000636228 GVQW1Q8N7I0 195 aa12.1□□□□□ -0.47
CLN3-246ENST00000636228 LGALS14Q8TCE9 139 aa12.1□□□□□ -0.47
CLN3-246ENST00000636228 EEF1AKMT3Q96AZ1 226 aa12.1□□□□□ -0.47
CLN3-246ENST00000636228 BLOC1S6Q9UL45 172 aa12.1□□□□□ -0.47
CLN3-246ENST00000636228 TRAV3A0A0B4J244 114 aa12.09□□□□□ -0.47
CLN3-246ENST00000636228 CLEC2LP0C7M8 214 aa12.09□□□□□ -0.47
CLN3-246ENST00000636228 HLA-GP17693 338 aa12.09□□□□□ -0.47
CLN3-246ENST00000636228 GALP22466 123 aa12.09□□□□□ -0.47
CLN3-246ENST00000636228 FCGR2CP31995 323 aa12.09□□□□□ -0.47
CLN3-246ENST00000636228 RPL8P62917 257 aaKnown RBP12.09□□□□□ -0.47
CLN3-246ENST00000636228 FAM209BQ5JX69 171 aa12.09□□□□□ -0.47
CLN3-246ENST00000636228 OR4A47Q6IF82 309 aa12.09□□□□□ -0.47
CLN3-246ENST00000636228 BTNL8Q6UX41 500 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms