RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 COCHO43405 550 aa0.05□□□□□ -2.4
SCN1A-208ENST00000625916 METTL15P1P0C7V9 234 aa0.05□□□□□ -2.4
SCN1A-208ENST00000625916 C17orf78Q8N4C9 275 aa0.05□□□□□ -2.4
SCN1A-208ENST00000625916 Q8N6K4 173 aa0.05□□□□□ -2.4
SCN1A-208ENST00000625916 ZNF676Q8N7Q3 588 aa0.05□□□□□ -2.4
SCN1A-208ENST00000625916 OR5AK3PQ8NH89 298 aa0.05□□□□□ -2.4
SCN1A-208ENST00000625916 CFAP45Q9UL16 551 aa0.05□□□□□ -2.4
SCN1A-208ENST00000625916 ZFP30Q9Y2G7 519 aa0.05□□□□□ -2.4
SCN1A-208ENST00000625916 TIMM22Q9Y584 194 aa0.05□□□□□ -2.4
SCN1A-208ENST00000625916 SIPA1L1O43166 1804 aa0.05□□□□□ -2.4
SCN1A-208ENST00000625916 TMEM94Q12767 1356 aa0.05□□□□□ -2.4
SCN1A-208ENST00000625916 KIF24Q5T7B8 1368 aa0.05□□□□□ -2.4
SCN1A-208ENST00000625916 DICER1Q9UPY3 1922 aaKnown RBP0.05□□□□□ -2.4
SCN1A-208ENST00000625916 GOLGA8QA0A0J9YX86 632 aa0.04□□□□□ -2.4
SCN1A-208ENST00000625916 IRGMA1A4Y4 181 aa0.04□□□□□ -2.4
SCN1A-208ENST00000625916 C5orf49A4QMS7 147 aa0.04□□□□□ -2.4
SCN1A-208ENST00000625916 PRH1P02810 166 aa0.04□□□□□ -2.4
SCN1A-208ENST00000625916 SHBGP04278 402 aa0.04□□□□□ -2.4
SCN1A-208ENST00000625916 GP1BAP07359 652 aa0.04□□□□□ -2.4
SCN1A-208ENST00000625916 CCL5P13501 91 aa0.04□□□□□ -2.4
SCN1A-208ENST00000625916 MIPP30301 263 aa0.04□□□□□ -2.4
SCN1A-208ENST00000625916 RPL30P62888 115 aaKnown RBP0.04□□□□□ -2.4
SCN1A-208ENST00000625916 UBE2IP63279 158 aaKnown RBP0.04□□□□□ -2.4
SCN1A-208ENST00000625916 RUNX1Q01196 453 aa0.04□□□□□ -2.4
SCN1A-208ENST00000625916 ZNF345Q14585 488 aa0.04□□□□□ -2.4
SCN1A-208ENST00000625916 EBPQ15125 230 aaKnown RBP0.04□□□□□ -2.4
SCN1A-208ENST00000625916 SYCP1Q15431 976 aa0.04□□□□□ -2.4
SCN1A-208ENST00000625916 DNAL1Q4LDG9 190 aa0.04□□□□□ -2.4
SCN1A-208ENST00000625916 FBXO48Q5FWF7 155 aa0.04□□□□□ -2.4
SCN1A-208ENST00000625916 BLIDQ8IZY5 108 aa0.04□□□□□ -2.4
SCN1A-208ENST00000625916 OR10D3Q8NH80 312 aa0.04□□□□□ -2.4
SCN1A-208ENST00000625916 SMR3AQ99954 134 aa0.04□□□□□ -2.4
SCN1A-208ENST00000625916 POFUT2Q9Y2G5 429 aa0.04□□□□□ -2.4
SCN1A-208ENST00000625916 MUC12Q9UKN1 5478 aa0.03□□□□□ -2.4
SCN1A-208ENST00000625916 CHD5Q8TDI0 1954 aa0.03□□□□□ -2.4
SCN1A-208ENST00000625916 LOC110117498A0A087WWA1 95 aa0.03□□□□□ -2.4
SCN1A-208ENST00000625916 TMED7-TICAM2A0A0A6YYA0 188 aa0.03□□□□□ -2.4
SCN1A-208ENST00000625916 FUOMA2VDF0 154 aa0.03□□□□□ -2.4
SCN1A-208ENST00000625916 K7ERQ8 282 aa0.03□□□□□ -2.4
SCN1A-208ENST00000625916 COX7A2LO14548 114 aa0.03□□□□□ -2.4
SCN1A-208ENST00000625916 SLC22A1O15245 554 aa0.03□□□□□ -2.4
SCN1A-208ENST00000625916 STX10O60499 249 aa0.03□□□□□ -2.4
SCN1A-208ENST00000625916 NEMFO60524 1076 aa0.03□□□□□ -2.4
SCN1A-208ENST00000625916 APOA1P02647 267 aa0.03□□□□□ -2.4
SCN1A-208ENST00000625916 SULT1A3P0DMM9 295 aa0.03□□□□□ -2.4
SCN1A-208ENST00000625916 SULT1A4P0DMN0 295 aa0.03□□□□□ -2.4
SCN1A-208ENST00000625916 HIST1H1CP16403 213 aaKnown RBP0.03□□□□□ -2.4
SCN1A-208ENST00000625916 CXCL3P19876 107 aa0.03□□□□□ -2.4
SCN1A-208ENST00000625916 SYT1P21579 422 aa0.03□□□□□ -2.4
SCN1A-208ENST00000625916 CD40LGP29965 261 aa0.03□□□□□ -2.4
SCN1A-208ENST00000625916 GRPRP30550 384 aa0.03□□□□□ -2.4
SCN1A-208ENST00000625916 LCN1P31025 176 aa0.03□□□□□ -2.4
SCN1A-208ENST00000625916 KCNJ3P48549 501 aa0.03□□□□□ -2.4
SCN1A-208ENST00000625916 FXYD2P54710 66 aa0.03□□□□□ -2.4
SCN1A-208ENST00000625916 HLA-DRB3P79483 266 aa0.03□□□□□ -2.4
SCN1A-208ENST00000625916 SAPCD1Q5SSQ6 148 aa0.03□□□□□ -2.4
SCN1A-208ENST00000625916 FAM45BPQ6NSW5 357 aa0.03□□□□□ -2.4
SCN1A-208ENST00000625916 LINC00471Q8N535 108 aa0.03□□□□□ -2.4
SCN1A-208ENST00000625916 TBC1D19Q8N5T2 526 aa0.03□□□□□ -2.4
SCN1A-208ENST00000625916 SPERTQ8NA61 448 aa0.03□□□□□ -2.4
SCN1A-208ENST00000625916 PPCDCQ96CD2 204 aa0.03□□□□□ -2.4
SCN1A-208ENST00000625916 RBP7Q96R05 134 aa0.03□□□□□ -2.4
SCN1A-208ENST00000625916 CCL13Q99616 98 aa0.03□□□□□ -2.4
SCN1A-208ENST00000625916 TIPINQ9BVW5 301 aa0.03□□□□□ -2.4
SCN1A-208ENST00000625916 NSRP1Q9H0G5 558 aaKnown RBP0.03□□□□□ -2.4
SCN1A-208ENST00000625916 KLK9Q9UKQ9 250 aa0.03□□□□□ -2.4
SCN1A-208ENST00000625916 BAIAP2Q9UQB8 552 aa0.03□□□□□ -2.4
SCN1A-208ENST00000625916 PTPRSQ13332 1948 aa0.03□□□□□ -2.41
SCN1A-208ENST00000625916 ZFC3H1O60293 1989 aaKnown RBP0.03□□□□□ -2.41
SCN1A-208ENST00000625916 TEX50A0A1B0GTY4 177 aa0.02□□□□□ -2.41
SCN1A-208ENST00000625916 C19orf84I3L1E1 186 aa0.02□□□□□ -2.41
SCN1A-208ENST00000625916 AZIN1O14977 448 aa0.02□□□□□ -2.41
SCN1A-208ENST00000625916 LEPROTO15243 131 aa0.02□□□□□ -2.41
SCN1A-208ENST00000625916 OR2T1O43869 369 aa0.02□□□□□ -2.41
SCN1A-208ENST00000625916 NSA2O95478 260 aaKnown RBP0.02□□□□□ -2.41
SCN1A-208ENST00000625916 ATP6V1G2O95670 118 aa0.02□□□□□ -2.41
SCN1A-208ENST00000625916 CXCL2P19875 107 aa0.02□□□□□ -2.41
SCN1A-208ENST00000625916 NFYAP23511 347 aaPredicted RBP0.02□□□□□ -2.41
SCN1A-208ENST00000625916 BRS3P32247 399 aa0.02□□□□□ -2.41
SCN1A-208ENST00000625916 ZNF93P35789 620 aaPredicted RBP0.02□□□□□ -2.41
SCN1A-208ENST00000625916 CSN1S1P47710 185 aa0.02□□□□□ -2.41
SCN1A-208ENST00000625916 ZNF846Q147U1 533 aa0.02□□□□□ -2.41
SCN1A-208ENST00000625916 JOSD1Q15040 202 aaPredicted RBP0.02□□□□□ -2.41
SCN1A-208ENST00000625916 SSX8Q7RTT4 187 aa0.02□□□□□ -2.41
SCN1A-208ENST00000625916 AAED1Q7RTV5 226 aa0.02□□□□□ -2.41
SCN1A-208ENST00000625916 C10orf67Q8IYJ2 551 aa0.02□□□□□ -2.41
SCN1A-208ENST00000625916 Q8N814 137 aa0.02□□□□□ -2.41
SCN1A-208ENST00000625916 OR5B17Q8NGF7 314 aa0.02□□□□□ -2.41
SCN1A-208ENST00000625916 SGMS2Q8NHU3 365 aa0.02□□□□□ -2.41
SCN1A-208ENST00000625916 GNPNAT1Q96EK6 184 aaPredicted RBP0.02□□□□□ -2.41
SCN1A-208ENST00000625916 ANKRD36BP1Q96IX9 119 aa0.02□□□□□ -2.41
SCN1A-208ENST00000625916 ERMAPQ96PL5 475 aaPredicted RBP0.02□□□□□ -2.41
SCN1A-208ENST00000625916 AMELYQ99218 206 aa0.02□□□□□ -2.41
SCN1A-208ENST00000625916 C10orf95Q9H7T3 257 aa0.02□□□□□ -2.41
SCN1A-208ENST00000625916 HRASLSQ9HDD0 168 aa0.02□□□□□ -2.41
SCN1A-208ENST00000625916 PRELID1Q9Y255 219 aa0.02□□□□□ -2.41
SCN1A-208ENST00000625916 UBR4Q5T4S7 5183 aa0.02□□□□□ -2.41
SCN1A-208ENST00000625916 A0A1W2PP64 1363 aa0.02□□□□□ -2.41
SCN1A-208ENST00000625916 RYR2Q92736 4967 aa0.02□□□□□ -2.41
SCN1A-208ENST00000625916 A0A1W2PPM0 123 aa0.01□□□□□ -2.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms