RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 SDSLQ96GA7 329 aa8.75□□□□□ -1.01
CUX1-221ENST00000622516 HINT2Q9BX68 163 aa8.75□□□□□ -1.01
CUX1-221ENST00000622516 SLC25A22Q9H936 323 aa8.75□□□□□ -1.01
CUX1-221ENST00000622516 SAP30LQ9HAJ7 183 aa8.75□□□□□ -1.01
CUX1-221ENST00000622516 GAB2Q9UQC2 676 aa8.75□□□□□ -1.01
CUX1-221ENST00000622516 SSUH2Q9Y2M2 353 aa8.75□□□□□ -1.01
CUX1-221ENST00000622516 SMCO3A2RU48 225 aa8.74□□□□□ -1.01
CUX1-221ENST00000622516 HPRT1P00492 218 aa8.74□□□□□ -1.01
CUX1-221ENST00000622516 IFNA10P01566 189 aa8.74□□□□□ -1.01
CUX1-221ENST00000622516 C3orf36Q3SXR2 165 aa8.74□□□□□ -1.01
CUX1-221ENST00000622516 LYPD2Q6UXB3 125 aa8.74□□□□□ -1.01
CUX1-221ENST00000622516 RBMS3Q6XE24 437 aaKnown RBP8.74□□□□□ -1.01
CUX1-221ENST00000622516 FAM24BQ8N5W8 94 aa8.74□□□□□ -1.01
CUX1-221ENST00000622516 NUP37Q8NFH4 326 aa8.74□□□□□ -1.01
CUX1-221ENST00000622516 SMCO4Q9NRQ5 59 aa8.74□□□□□ -1.01
CUX1-221ENST00000622516 TMEM140Q9NV12 185 aa8.74□□□□□ -1.01
CUX1-221ENST00000622516 RALYQ9UKM9 306 aaKnown RBP8.74□□□□□ -1.01
CUX1-221ENST00000622516 hCG_1809904A0A1W2PP81 198 aa8.74□□□□□ -1.01
CUX1-221ENST00000622516 A0A1W2PR64 198 aa8.74□□□□□ -1.01
CUX1-221ENST00000622516 A0A1W2PRV1 198 aa8.74□□□□□ -1.01
CUX1-221ENST00000622516 RRHO14718 337 aa8.74□□□□□ -1.01
CUX1-221ENST00000622516 PLAUP00749 431 aa8.74□□□□□ -1.01
CUX1-221ENST00000622516 REG1BP48304 166 aa8.74□□□□□ -1.01
CUX1-221ENST00000622516 RAB11AP62491 216 aa8.74□□□□□ -1.01
CUX1-221ENST00000622516 MRPS11P82912 194 aaKnown RBP8.74□□□□□ -1.01
CUX1-221ENST00000622516 GCSAMLQ5JQS6 135 aa8.74□□□□□ -1.01
CUX1-221ENST00000622516 AVPI1Q5T686 147 aa8.74□□□□□ -1.01
CUX1-221ENST00000622516 SP5Q6BEB4 398 aaPredicted RBP8.74□□□□□ -1.01
CUX1-221ENST00000622516 ZNF383Q8NA42 475 aa8.74□□□□□ -1.01
CUX1-221ENST00000622516 H1FXQ92522 213 aaKnown RBP8.74□□□□□ -1.01
CUX1-221ENST00000622516 HEYLQ9NQ87 328 aaPredicted RBP8.74□□□□□ -1.01
CUX1-221ENST00000622516 ELOVL5Q9NYP7 299 aa8.74□□□□□ -1.01
CUX1-221ENST00000622516 VPS13CQ709C8 3753 aa8.74□□□□□ -1.01
CUX1-221ENST00000622516 FAM90A27PA6NNH2 459 aa8.73□□□□□ -1.01
CUX1-221ENST00000622516 C15orf62A8K5M9 175 aa8.73□□□□□ -1.01
CUX1-221ENST00000622516 LYNX1G3V0Z9 82 aa8.73□□□□□ -1.01
CUX1-221ENST00000622516 H3BQ15 152 aa8.73□□□□□ -1.01
CUX1-221ENST00000622516 PPIHO43447 177 aaKnown RBP8.73□□□□□ -1.01
CUX1-221ENST00000622516 IGKV1-16P04430 117 aa8.73□□□□□ -1.01
CUX1-221ENST00000622516 LYNX1P0DP58 116 aa8.73□□□□□ -1.01
CUX1-221ENST00000622516 DLX1P56177 255 aa8.73□□□□□ -1.01
CUX1-221ENST00000622516 GATAD1Q8WUU5 269 aa8.73□□□□□ -1.01
CUX1-221ENST00000622516 RHOVQ96L33 236 aa8.73□□□□□ -1.01
CUX1-221ENST00000622516 SLC25A10Q9UBX3 287 aaPredicted RBP8.73□□□□□ -1.01
CUX1-221ENST00000622516 ZNF835Q9Y2P0 537 aa8.73□□□□□ -1.01
CUX1-221ENST00000622516 VSTM5A8MXK1 200 aa8.73□□□□□ -1.01
CUX1-221ENST00000622516 MBP02144 154 aa8.73□□□□□ -1.01
CUX1-221ENST00000622516 DEFA6Q01524 100 aa8.73□□□□□ -1.01
CUX1-221ENST00000622516 SSX3Q99909 188 aa8.73□□□□□ -1.01
CUX1-221ENST00000622516 LAMP3Q9UQV4 416 aa8.73□□□□□ -1.01
CUX1-221ENST00000622516 URGCP-MRPS24S4R325 110 aa8.73□□□□□ -1.01
CUX1-221ENST00000622516 ARHGAP32A7KAX9 2087 aa8.73□□□□□ -1.01
CUX1-221ENST00000622516 MAP1LC3B2A6NCE7 125 aa8.73□□□□□ -1.01
CUX1-221ENST00000622516 E7EQL1 145 aa8.73□□□□□ -1.01
CUX1-221ENST00000622516 GFRA3O60609 400 aa8.73□□□□□ -1.01
CUX1-221ENST00000622516 TNFRSF1AP19438 455 aa8.73□□□□□ -1.01
CUX1-221ENST00000622516 ERVK-16P61578 105 aa8.73□□□□□ -1.01
CUX1-221ENST00000622516 SNRPEP62304 92 aaKnown RBP8.73□□□□□ -1.01
CUX1-221ENST00000622516 RPL31P62899 125 aaKnown RBP8.73□□□□□ -1.01
CUX1-221ENST00000622516 ZNF429Q86V71 674 aa8.73□□□□□ -1.01
CUX1-221ENST00000622516 LHX4Q969G2 390 aa8.73□□□□□ -1.01
CUX1-221ENST00000622516 RAB39BQ96DA2 213 aa8.73□□□□□ -1.01
CUX1-221ENST00000622516 MAP1LC3BQ9GZQ8 125 aa8.73□□□□□ -1.01
CUX1-221ENST00000622516 SLC39A9Q9NUM3 307 aa8.73□□□□□ -1.01
CUX1-221ENST00000622516 JKAMPQ9P055 326 aa8.73□□□□□ -1.01
CUX1-221ENST00000622516 NAV3Q8IVL0 2385 aa8.72□□□□□ -1.01
CUX1-221ENST00000622516 HIVEP3Q5T1R4 2406 aa8.72□□□□□ -1.01
CUX1-221ENST00000622516 NQO2P16083 231 aa8.72□□□□□ -1.01
CUX1-221ENST00000622516 RELBQ01201 579 aa8.72□□□□□ -1.01
CUX1-221ENST00000622516 CDSNQ15517 529 aa8.72□□□□□ -1.01
CUX1-221ENST00000622516 TMEM41BQ5BJD5 291 aa8.72□□□□□ -1.01
CUX1-221ENST00000622516 FFAR4Q5NUL3 377 aa8.72□□□□□ -1.01
CUX1-221ENST00000622516 ZCCHC14Q8WYQ9 949 aaKnown RBP8.72□□□□□ -1.01
CUX1-221ENST00000622516 PSMG3Q9BT73 122 aaPredicted RBP8.72□□□□□ -1.01
CUX1-221ENST00000622516 NPCDR1Q9BY65 106 aa8.72□□□□□ -1.01
CUX1-221ENST00000622516 IDI2-AS1Q9NZ38 188 aa8.72□□□□□ -1.01
CUX1-221ENST00000622516 BTBD17A6NE02 478 aa8.72□□□□□ -1.01
CUX1-221ENST00000622516 HBE1P02100 147 aa8.72□□□□□ -1.01
CUX1-221ENST00000622516 SERF2P84101 59 aa8.72□□□□□ -1.01
CUX1-221ENST00000622516 OR4A47Q6IF82 309 aa8.72□□□□□ -1.01
CUX1-221ENST00000622516 DDB2Q92466 427 aa8.72□□□□□ -1.01
CUX1-221ENST00000622516 HIST1H2BAQ96A08 127 aa8.72□□□□□ -1.01
CUX1-221ENST00000622516 TMEM147Q9BVK8 224 aa8.72□□□□□ -1.01
CUX1-221ENST00000622516 DYNLRB1Q9NP97 96 aa8.72□□□□□ -1.01
CUX1-221ENST00000622516 A0A1B0GW64 132 aa8.71□□□□□ -1.01
CUX1-221ENST00000622516 SRRM4A7MD48 611 aaKnown RBP8.71□□□□□ -1.01
CUX1-221ENST00000622516 SHISA9B4DS77 424 aa8.71□□□□□ -1.01
CUX1-221ENST00000622516 TAGLN2P37802 199 aaKnown RBP8.71□□□□□ -1.01
CUX1-221ENST00000622516 DLK1P80370 383 aa8.71□□□□□ -1.01
CUX1-221ENST00000622516 DIAPH2-AS1Q14236 149 aa8.71□□□□□ -1.01
CUX1-221ENST00000622516 ZNF506Q5JVG8 444 aa8.71□□□□□ -1.01
CUX1-221ENST00000622516 ZNF343Q6P1L6 599 aa8.71□□□□□ -1.01
CUX1-221ENST00000622516 TCTEX1D1Q8N7M0 179 aa8.71□□□□□ -1.01
CUX1-221ENST00000622516 OR10G4Q8NGN3 311 aa8.71□□□□□ -1.01
CUX1-221ENST00000622516 OR10G9Q8NGN4 311 aa8.71□□□□□ -1.01
CUX1-221ENST00000622516 OR10G7Q8NGN6 311 aa8.71□□□□□ -1.01
CUX1-221ENST00000622516 RNASE6Q93091 150 aaKnown RBP8.71□□□□□ -1.01
CUX1-221ENST00000622516 PINX1Q96BK5 328 aaKnown RBP8.71□□□□□ -1.01
CUX1-221ENST00000622516 TCEAL7Q9BRU2 100 aa8.71□□□□□ -1.01
CUX1-221ENST00000622516 WNK2Q9Y3S1 2297 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 143.3 ms