RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 SIAH2O43255 324 aa12.1□□□□□ -0.47
SHROOM1-208ENST00000617339 F2RP25116 425 aa12.1□□□□□ -0.47
SHROOM1-208ENST00000617339 KLF3P57682 345 aaPredicted RBP12.1□□□□□ -0.47
SHROOM1-208ENST00000617339 Q6ZSR3 168 aa12.1□□□□□ -0.47
SHROOM1-208ENST00000617339 TCF23Q7RTU1 214 aa12.1□□□□□ -0.47
SHROOM1-208ENST00000617339 TMEM170AQ8WVE7 144 aa12.1□□□□□ -0.47
SHROOM1-208ENST00000617339 R3HDM4Q96D70 268 aa12.1□□□□□ -0.47
SHROOM1-208ENST00000617339 CTDSP1Q9GZU7 261 aa12.1□□□□□ -0.47
SHROOM1-208ENST00000617339 UBE2L5PA0A1B0GUS4 154 aa12.1□□□□□ -0.47
SHROOM1-208ENST00000617339 SS18L1O75177 396 aaPredicted RBP12.1□□□□□ -0.47
SHROOM1-208ENST00000617339 NRN1LQ496H8 165 aa12.1□□□□□ -0.47
SHROOM1-208ENST00000617339 TMEM41BQ5BJD5 291 aa12.1□□□□□ -0.47
SHROOM1-208ENST00000617339 DUX4L9Q6RFH8 374 aaPredicted RBP12.1□□□□□ -0.47
SHROOM1-208ENST00000617339 C11orf1Q9H5F2 150 aa12.1□□□□□ -0.47
SHROOM1-208ENST00000617339 TMEM242Q9NWH2 141 aa12.1□□□□□ -0.47
SHROOM1-208ENST00000617339 USP9YO00507 2555 aaPredicted RBP12.1□□□□□ -0.47
SHROOM1-208ENST00000617339 CLDN1O95832 211 aa12.1□□□□□ -0.47
SHROOM1-208ENST00000617339 IFNA1P01562 189 aa12.1□□□□□ -0.47
SHROOM1-208ENST00000617339 MDH2P40926 338 aaKnown RBP12.1□□□□□ -0.47
SHROOM1-208ENST00000617339 ARL16Q0P5N6 197 aa12.1□□□□□ -0.47
SHROOM1-208ENST00000617339 IL24Q13007 206 aa12.1□□□□□ -0.47
SHROOM1-208ENST00000617339 C1orf194Q5T5A4 169 aa12.1□□□□□ -0.47
SHROOM1-208ENST00000617339 ZNF474Q6S9Z5 364 aaPredicted RBP12.1□□□□□ -0.47
SHROOM1-208ENST00000617339 FGFRL1Q8N441 504 aa12.1□□□□□ -0.47
SHROOM1-208ENST00000617339 TRAPPC1Q9Y5R8 145 aa12.1□□□□□ -0.47
SHROOM1-208ENST00000617339 LRRK2Q5S007 2527 aa12.09□□□□□ -0.47
SHROOM1-208ENST00000617339 IGHV2OR16-5A0A0B4J2B6 119 aa12.09□□□□□ -0.47
SHROOM1-208ENST00000617339 PAX9P55771 341 aa12.09□□□□□ -0.47
SHROOM1-208ENST00000617339 INO80CQ6PI98 192 aaPredicted RBP12.09□□□□□ -0.47
SHROOM1-208ENST00000617339 SEM1Q6ZVN7 128 aa12.09□□□□□ -0.47
SHROOM1-208ENST00000617339 LINC01560Q8TB33 94 aa12.09□□□□□ -0.47
SHROOM1-208ENST00000617339 RND1Q92730 232 aa12.09□□□□□ -0.47
SHROOM1-208ENST00000617339 SNRNP40Q96DI7 357 aaKnown RBP12.09□□□□□ -0.47
SHROOM1-208ENST00000617339 OR2V2Q96R30 315 aa12.09□□□□□ -0.47
SHROOM1-208ENST00000617339 PARLQ9H300 379 aa12.09□□□□□ -0.47
SHROOM1-208ENST00000617339 LPAR2Q9HBW0 351 aa12.09□□□□□ -0.47
SHROOM1-208ENST00000617339 PLXNB1O43157 2135 aa12.09□□□□□ -0.47
SHROOM1-208ENST00000617339 LRP5LA4QPB2 252 aa12.09□□□□□ -0.47
SHROOM1-208ENST00000617339 C12orf77C9JDV5 145 aa12.09□□□□□ -0.47
SHROOM1-208ENST00000617339 AQP7O14520 342 aa12.09□□□□□ -0.47
SHROOM1-208ENST00000617339 TNFSF13O75888 250 aa12.09□□□□□ -0.47
SHROOM1-208ENST00000617339 HBZP02008 142 aa12.09□□□□□ -0.47
SHROOM1-208ENST00000617339 Q6P435 159 aa12.09□□□□□ -0.47
SHROOM1-208ENST00000617339 GBGT1Q8N5D6 347 aa12.09□□□□□ -0.47
SHROOM1-208ENST00000617339 OR13A1Q8NGR1 328 aa12.09□□□□□ -0.47
SHROOM1-208ENST00000617339 VN1R17PQ8TDU5 208 aa12.09□□□□□ -0.47
SHROOM1-208ENST00000617339 GALMQ96C23 342 aa12.09□□□□□ -0.47
SHROOM1-208ENST00000617339 HRASP01112 189 aa12.09□□□□□ -0.47
SHROOM1-208ENST00000617339 C11orf42Q8N5U0 333 aa12.09□□□□□ -0.47
SHROOM1-208ENST00000617339 PPP1R35Q8TAP8 253 aa12.09□□□□□ -0.47
SHROOM1-208ENST00000617339 C16orf97H3BN30 126 aa12.08□□□□□ -0.48
SHROOM1-208ENST00000617339 GYPAP02724 150 aa12.08□□□□□ -0.48
SHROOM1-208ENST00000617339 CCKARP32238 428 aa12.08□□□□□ -0.48
SHROOM1-208ENST00000617339 DPPA3Q6W0C5 159 aa12.08□□□□□ -0.48
SHROOM1-208ENST00000617339 DRAM1Q8N682 238 aa12.08□□□□□ -0.48
SHROOM1-208ENST00000617339 ACY3Q96HD9 319 aa12.08□□□□□ -0.48
SHROOM1-208ENST00000617339 PGPEP1LA6NFU8 196 aa12.08□□□□□ -0.48
SHROOM1-208ENST00000617339 OR10J1P30954 320 aa12.08□□□□□ -0.48
SHROOM1-208ENST00000617339 TNFAIP6P98066 277 aaPredicted RBP12.08□□□□□ -0.48
SHROOM1-208ENST00000617339 UTF1Q5T230 341 aa12.08□□□□□ -0.48
SHROOM1-208ENST00000617339 MRGPRGQ86SM5 289 aa12.08□□□□□ -0.48
SHROOM1-208ENST00000617339 FAM103A1Q9BTL3 118 aaKnown RBP12.08□□□□□ -0.48
SHROOM1-208ENST00000617339 GP6Q9HCN6 339 aa12.08□□□□□ -0.48
SHROOM1-208ENST00000617339 TRAV34A0A0B4J273 112 aa12.07□□□□□ -0.48
SHROOM1-208ENST00000617339 VDAC1P21796 283 aa12.07□□□□□ -0.48
SHROOM1-208ENST00000617339 SRPXP78539 464 aa12.07□□□□□ -0.48
SHROOM1-208ENST00000617339 MEF2BQ02080 365 aaPredicted RBP12.07□□□□□ -0.48
SHROOM1-208ENST00000617339 BAXQ07812 192 aa12.07□□□□□ -0.48
SHROOM1-208ENST00000617339 ZNF324BQ6AW86 544 aaPredicted RBP12.07□□□□□ -0.48
SHROOM1-208ENST00000617339 TMEM108Q6UXF1 575 aa12.07□□□□□ -0.48
SHROOM1-208ENST00000617339 WDR82Q6UXN9 313 aa12.07□□□□□ -0.48
SHROOM1-208ENST00000617339 ITLN1Q8WWA0 313 aa12.07□□□□□ -0.48
SHROOM1-208ENST00000617339 PSENENQ9NZ42 101 aa12.07□□□□□ -0.48
SHROOM1-208ENST00000617339 CLN8Q9UBY8 286 aa12.07□□□□□ -0.48
SHROOM1-208ENST00000617339 C1QTNF9BB2RNN3 333 aa12.07□□□□□ -0.48
SHROOM1-208ENST00000617339 UBE2G2P60604 165 aa12.07□□□□□ -0.48
SHROOM1-208ENST00000617339 ID3Q02535 119 aa12.07□□□□□ -0.48
SHROOM1-208ENST00000617339 DNAJC4Q9NNZ3 241 aa12.07□□□□□ -0.48
SHROOM1-208ENST00000617339 OR6C3Q9NZP0 311 aa12.07□□□□□ -0.48
SHROOM1-208ENST00000617339 ZNRD1Q9P1U0 126 aa12.07□□□□□ -0.48
SHROOM1-208ENST00000617339 RPL30P62888 115 aaKnown RBP12.07□□□□□ -0.48
SHROOM1-208ENST00000617339 IMMP2LQ96T52 175 aa12.07□□□□□ -0.48
SHROOM1-208ENST00000617339 HIVEP3Q5T1R4 2406 aa12.07□□□□□ -0.48
SHROOM1-208ENST00000617339 TMEM210A6NLX4 147 aa12.06□□□□□ -0.48
SHROOM1-208ENST00000617339 TMPRSS2O15393 492 aa12.06□□□□□ -0.48
SHROOM1-208ENST00000617339 MANBALQ9NQG1 85 aa12.06□□□□□ -0.48
SHROOM1-208ENST00000617339 KBTBD11O94819 623 aa12.06□□□□□ -0.48
SHROOM1-208ENST00000617339 PSMB3P49720 205 aa12.06□□□□□ -0.48
SHROOM1-208ENST00000617339 ACOT6Q3I5F7 207 aaPredicted RBP12.06□□□□□ -0.48
SHROOM1-208ENST00000617339 ACTL10Q5JWF8 245 aa12.06□□□□□ -0.48
SHROOM1-208ENST00000617339 CYP2G1PQ6ZSU1 146 aa12.06□□□□□ -0.48
SHROOM1-208ENST00000617339 VPS25Q9BRG1 176 aa12.06□□□□□ -0.48
SHROOM1-208ENST00000617339 NGBQ9NPG2 151 aa12.06□□□□□ -0.48
SHROOM1-208ENST00000617339 DOPEY2Q9Y3R5 2298 aa12.06□□□□□ -0.48
SHROOM1-208ENST00000617339 A0A1W2PRD5 423 aa12.06□□□□□ -0.48
SHROOM1-208ENST00000617339 A0A1W2PRF3 423 aa12.06□□□□□ -0.48
SHROOM1-208ENST00000617339 A0A1W2PRM7 423 aa12.06□□□□□ -0.48
SHROOM1-208ENST00000617339 IGHG3P01860 377 aa12.06□□□□□ -0.48
SHROOM1-208ENST00000617339 MRPS11P82912 194 aaKnown RBP12.06□□□□□ -0.48
SHROOM1-208ENST00000617339 NHLH1Q02575 133 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms