RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 KBTBD11O94819 623 aa10.51□□□□□ -0.73
LINC00540-202ENST00000616974 CNIH1O95406 144 aa10.51□□□□□ -0.73
LINC00540-202ENST00000616974 KRASP01116 189 aa10.51□□□□□ -0.73
LINC00540-202ENST00000616974 IGLV1-40P01703 118 aa10.51□□□□□ -0.73
LINC00540-202ENST00000616974 IGHG4P01861 327 aa10.51□□□□□ -0.73
LINC00540-202ENST00000616974 IL6RP08887 468 aaPredicted RBP10.51□□□□□ -0.73
LINC00540-202ENST00000616974 RRASP10301 218 aa10.51□□□□□ -0.73
LINC00540-202ENST00000616974 F2RP25116 425 aa10.51□□□□□ -0.73
LINC00540-202ENST00000616974 ACTBL2Q562R1 376 aa10.51□□□□□ -0.73
LINC00540-202ENST00000616974 SPANXN2Q5MJ10 180 aa10.51□□□□□ -0.73
LINC00540-202ENST00000616974 UNQ5815/PRO19632Q6UWF5 114 aa10.51□□□□□ -0.73
LINC00540-202ENST00000616974 TREML4Q6UXN2 200 aa10.51□□□□□ -0.73
LINC00540-202ENST00000616974 ETV3LQ6ZN32 361 aa10.51□□□□□ -0.73
LINC00540-202ENST00000616974 OR4X2Q8NGF9 303 aa10.51□□□□□ -0.73
LINC00540-202ENST00000616974 SGMS2Q8NHU3 365 aa10.51□□□□□ -0.73
LINC00540-202ENST00000616974 OR9G9P0C7N8 305 aa10.5□□□□□ -0.73
LINC00540-202ENST00000616974 VDAC1P21796 283 aa10.5□□□□□ -0.73
LINC00540-202ENST00000616974 MSMO1Q15800 293 aa10.5□□□□□ -0.73
LINC00540-202ENST00000616974 VMA21Q3ZAQ7 101 aa10.5□□□□□ -0.73
LINC00540-202ENST00000616974 SLC38A6Q8IZM9 456 aa10.5□□□□□ -0.73
LINC00540-202ENST00000616974 ZBTB34Q8NCN2 500 aa10.5□□□□□ -0.73
LINC00540-202ENST00000616974 C15orf40Q8WUR7 153 aa10.5□□□□□ -0.73
LINC00540-202ENST00000616974 SRSF12Q8WXF0 261 aaKnown RBP10.5□□□□□ -0.73
LINC00540-202ENST00000616974 TMEM230Q96A57 120 aa10.5□□□□□ -0.73
LINC00540-202ENST00000616974 TMEM140Q9NV12 185 aa10.5□□□□□ -0.73
LINC00540-202ENST00000616974 MARCH11A6NNE9 402 aa10.49□□□□□ -0.73
LINC00540-202ENST00000616974 OR2A4O95047 310 aa10.49□□□□□ -0.73
LINC00540-202ENST00000616974 PF4V1P10720 104 aa10.49□□□□□ -0.73
LINC00540-202ENST00000616974 UCP3P55916 312 aa10.49□□□□□ -0.73
LINC00540-202ENST00000616974 RPL23AP62750 156 aaKnown RBP10.49□□□□□ -0.73
LINC00540-202ENST00000616974 SSBP1Q04837 148 aaKnown RBP10.49□□□□□ -0.73
LINC00540-202ENST00000616974 CATR1Q13166 79 aa10.49□□□□□ -0.73
LINC00540-202ENST00000616974 CBX3Q13185 183 aa10.49□□□□□ -0.73
LINC00540-202ENST00000616974 TEX38Q6PEX7 206 aa10.49□□□□□ -0.73
LINC00540-202ENST00000616974 C1QL4Q86Z23 238 aa10.49□□□□□ -0.73
LINC00540-202ENST00000616974 TEX45Q8NA69 505 aa10.49□□□□□ -0.73
LINC00540-202ENST00000616974 KLHL30-AS1Q8NEE0 82 aa10.49□□□□□ -0.73
LINC00540-202ENST00000616974 LHFPL5Q8TAF8 219 aa10.49□□□□□ -0.73
LINC00540-202ENST00000616974 OR2A7Q96R45 310 aa10.49□□□□□ -0.73
LINC00540-202ENST00000616974 AKIP1Q9NQ31 210 aa10.49□□□□□ -0.73
LINC00540-202ENST00000616974 A0A0G2JRQ6 117 aa10.49□□□□□ -0.73
LINC00540-202ENST00000616974 TEX22C9J3V5 150 aa10.49□□□□□ -0.73
LINC00540-202ENST00000616974 MPPED1O15442 326 aa10.49□□□□□ -0.73
LINC00540-202ENST00000616974 IGHV3-11P01762 117 aa10.49□□□□□ -0.73
LINC00540-202ENST00000616974 REG1AP05451 166 aa10.49□□□□□ -0.73
LINC00540-202ENST00000616974 AREGP15514 252 aa10.49□□□□□ -0.73
LINC00540-202ENST00000616974 TBPP20226 339 aa10.49□□□□□ -0.73
LINC00540-202ENST00000616974 CCR6P51684 374 aa10.49□□□□□ -0.73
LINC00540-202ENST00000616974 NDUFA11Q86Y39 141 aa10.49□□□□□ -0.73
LINC00540-202ENST00000616974 CMTM1Q8IZ96 169 aa10.49□□□□□ -0.73
LINC00540-202ENST00000616974 TOMM5Q8N4H5 51 aa10.49□□□□□ -0.73
LINC00540-202ENST00000616974 TSSC4Q9Y5U2 329 aaPredicted RBP10.49□□□□□ -0.73
LINC00540-202ENST00000616974 M0QZ24 198 aa10.48□□□□□ -0.73
LINC00540-202ENST00000616974 RBFOX2O43251 390 aaKnown RBP eCLIP10.48□□□□□ -0.73
LINC00540-202ENST00000616974 HPRT1P00492 218 aa10.48□□□□□ -0.73
LINC00540-202ENST00000616974 CRIP2P52943 208 aaPredicted RBP10.48□□□□□ -0.73
LINC00540-202ENST00000616974 OR2B8PP59922 312 aa10.48□□□□□ -0.73
LINC00540-202ENST00000616974 C2orf68Q2NKX9 166 aa10.48□□□□□ -0.73
LINC00540-202ENST00000616974 OR10W1Q8NGF6 305 aa10.48□□□□□ -0.73
LINC00540-202ENST00000616974 GPR132Q9UNW8 380 aa10.48□□□□□ -0.73
LINC00540-202ENST00000616974 IGKV1-5P01602 117 aa10.48□□□□□ -0.73
LINC00540-202ENST00000616974 BTCP35070 178 aa10.48□□□□□ -0.73
LINC00540-202ENST00000616974 RAB9AP51151 201 aa10.48□□□□□ -0.73
LINC00540-202ENST00000616974 SLC35B1P78383 322 aa10.48□□□□□ -0.73
LINC00540-202ENST00000616974 MEF2DQ14814 521 aa10.48□□□□□ -0.73
LINC00540-202ENST00000616974 RNF152Q8N8N0 203 aa10.48□□□□□ -0.73
LINC00540-202ENST00000616974 DMBX1Q8NFW5 382 aa10.48□□□□□ -0.73
LINC00540-202ENST00000616974 TMEM167AQ8TBQ9 72 aa10.48□□□□□ -0.73
LINC00540-202ENST00000616974 MYOZ3Q8TDC0 251 aa10.48□□□□□ -0.73
LINC00540-202ENST00000616974 RAX2Q96IS3 184 aa10.48□□□□□ -0.73
LINC00540-202ENST00000616974 SEC22AQ96IW7 307 aa10.48□□□□□ -0.73
LINC00540-202ENST00000616974 DISC1C4P0D8 188 aa10.47□□□□□ -0.73
LINC00540-202ENST00000616974 OR5AC1P0C628 307 aa10.47□□□□□ -0.73
LINC00540-202ENST00000616974 NQO2P16083 231 aa10.47□□□□□ -0.73
LINC00540-202ENST00000616974 SUPT4H1P63272 117 aaKnown RBP10.47□□□□□ -0.73
LINC00540-202ENST00000616974 FOXE3Q13461 319 aa10.47□□□□□ -0.73
LINC00540-202ENST00000616974 ZNF57Q68EA5 555 aaPredicted RBP10.47□□□□□ -0.73
LINC00540-202ENST00000616974 FYTTD1Q96QD9 318 aaKnown RBP10.47□□□□□ -0.73
LINC00540-202ENST00000616974 PLEKHA2Q9HB19 425 aa10.47□□□□□ -0.73
LINC00540-202ENST00000616974 CTSDP07339 412 aaPredicted RBP10.46□□□□□ -0.73
LINC00540-202ENST00000616974 IL7P13232 177 aa10.46□□□□□ -0.73
LINC00540-202ENST00000616974 TAS2R31P59538 309 aa10.46□□□□□ -0.73
LINC00540-202ENST00000616974 ZNF45Q02386 682 aa10.46□□□□□ -0.73
LINC00540-202ENST00000616974 AKIRIN2Q53H80 203 aa10.46□□□□□ -0.73
LINC00540-202ENST00000616974 SPINK9Q5DT21 86 aa10.46□□□□□ -0.73
LINC00540-202ENST00000616974 C11orf87Q6NUJ2 197 aa10.46□□□□□ -0.73
LINC00540-202ENST00000616974 SLC2A8Q9NY64 477 aa10.46□□□□□ -0.73
LINC00540-202ENST00000616974 FLVCR2Q9UPI3 526 aa10.46□□□□□ -0.73
LINC00540-202ENST00000616974 FOXA2Q9Y261 457 aaPredicted RBP10.46□□□□□ -0.73
LINC00540-202ENST00000616974 S4R3C0 116 aa10.46□□□□□ -0.73
LINC00540-202ENST00000616974 C3orf85A0A1B0GTC6 90 aa10.46□□□□□ -0.74
LINC00540-202ENST00000616974 G3V4G9 280 aa10.46□□□□□ -0.74
LINC00540-202ENST00000616974 UPK2O00526 184 aa10.46□□□□□ -0.74
LINC00540-202ENST00000616974 HRASP01112 189 aa10.46□□□□□ -0.74
LINC00540-202ENST00000616974 KIR2DS2P43631 304 aa10.46□□□□□ -0.74
LINC00540-202ENST00000616974 RPL8P62917 257 aaKnown RBP10.46□□□□□ -0.74
LINC00540-202ENST00000616974 ZNF491Q8N8L2 437 aa10.46□□□□□ -0.74
LINC00540-202ENST00000616974 GLYATL2Q8WU03 294 aa10.46□□□□□ -0.74
LINC00540-202ENST00000616974 PHB2Q99623 299 aa10.46□□□□□ -0.74
LINC00540-202ENST00000616974 BET1LQ9NYM9 111 aa10.46□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms