RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 RRHO14718 337 aa11.9□□□□□ -0.5
CPSF1-212ENST00000616140 RNF224P0DH78 156 aa11.9□□□□□ -0.5
CPSF1-212ENST00000616140 DDTP30046 118 aa11.9□□□□□ -0.5
CPSF1-212ENST00000616140 ZNF506Q5JVG8 444 aa11.9□□□□□ -0.5
CPSF1-212ENST00000616140 NPIPB3Q92617 1050 aa11.9□□□□□ -0.5
CPSF1-212ENST00000616140 GFI1Q99684 422 aa11.9□□□□□ -0.5
CPSF1-212ENST00000616140 MRPL14Q6P1L8 145 aaKnown RBP11.9□□□□□ -0.5
CPSF1-212ENST00000616140 SHISA5Q8N114 240 aa11.9□□□□□ -0.5
CPSF1-212ENST00000616140 TMEM45BQ96B21 275 aa11.9□□□□□ -0.5
CPSF1-212ENST00000616140 RNF126Q9BV68 326 aa11.9□□□□□ -0.5
CPSF1-212ENST00000616140 IGLV3-12A0A075B6K2 115 aa11.9□□□□□ -0.51
CPSF1-212ENST00000616140 H0YIZ8 118 aa11.9□□□□□ -0.51
CPSF1-212ENST00000616140 RPL39P5Q59GN2 51 aa11.9□□□□□ -0.51
CPSF1-212ENST00000616140 COL5A1-AS1Q5SY13 56 aa11.9□□□□□ -0.51
CPSF1-212ENST00000616140 HSPB7Q9UBY9 170 aa11.9□□□□□ -0.51
CPSF1-212ENST00000616140 REG1AP05451 166 aa11.89□□□□□ -0.51
CPSF1-212ENST00000616140 PAQR4Q8N4S7 273 aaPredicted RBP11.89□□□□□ -0.51
CPSF1-212ENST00000616140 OR51G1Q8NGK1 321 aa11.89□□□□□ -0.51
CPSF1-212ENST00000616140 EAF1Q96JC9 268 aaPredicted RBP11.89□□□□□ -0.51
CPSF1-212ENST00000616140 SRIP30626 198 aa11.89□□□□□ -0.51
CPSF1-212ENST00000616140 FADS6Q8N9I5 356 aa11.89□□□□□ -0.51
CPSF1-212ENST00000616140 OR4C13Q8NGP0 309 aa11.89□□□□□ -0.51
CPSF1-212ENST00000616140 EFEMP2O95967 443 aa11.89□□□□□ -0.51
CPSF1-212ENST00000616140 MGPP08493 103 aa11.89□□□□□ -0.51
CPSF1-212ENST00000616140 WFDC3Q8IUB2 231 aa11.89□□□□□ -0.51
CPSF1-212ENST00000616140 EIF4E3Q8N5X7 224 aaKnown RBP11.89□□□□□ -0.51
CPSF1-212ENST00000616140 STPG3Q8N7X2 389 aa11.89□□□□□ -0.51
CPSF1-212ENST00000616140 FBLN5Q9UBX5 448 aa11.89□□□□□ -0.51
CPSF1-212ENST00000616140 CECR9P0C854 216 aa11.88□□□□□ -0.51
CPSF1-212ENST00000616140 TMEM177Q53S58 311 aa11.88□□□□□ -0.51
CPSF1-212ENST00000616140 BIVMQ86UB2 503 aa11.88□□□□□ -0.51
CPSF1-212ENST00000616140 SLC25A28Q96A46 364 aa11.88□□□□□ -0.51
CPSF1-212ENST00000616140 C1QTNF5Q9BXJ0 243 aa11.88□□□□□ -0.51
CPSF1-212ENST00000616140 PSME4Q14997 1843 aa11.88□□□□□ -0.51
CPSF1-212ENST00000616140 LOC102724200A0A096LPH7 203 aaPredicted RBP11.88□□□□□ -0.51
CPSF1-212ENST00000616140 PLSCR2Q9NRY7 297 aa11.88□□□□□ -0.51
CPSF1-212ENST00000616140 RALGAPA2Q2PPJ7 1873 aa11.88□□□□□ -0.51
CPSF1-212ENST00000616140 SP9P0CG40 484 aa11.88□□□□□ -0.51
CPSF1-212ENST00000616140 PSG7Q13046 419 aa11.88□□□□□ -0.51
CPSF1-212ENST00000616140 SRSF9Q13242 221 aaKnown RBP eCLIP11.88□□□□□ -0.51
CPSF1-212ENST00000616140 C17orf98A8MV24 154 aa11.88□□□□□ -0.51
CPSF1-212ENST00000616140 ARF6P62330 175 aa11.88□□□□□ -0.51
CPSF1-212ENST00000616140 OR10S1Q8NGN2 331 aa11.88□□□□□ -0.51
CPSF1-212ENST00000616140 GATAD1Q8WUU5 269 aa11.88□□□□□ -0.51
CPSF1-212ENST00000616140 TMEM171Q8WVE6 324 aa11.88□□□□□ -0.51
CPSF1-212ENST00000616140 DCTN5Q9BTE1 182 aa11.88□□□□□ -0.51
CPSF1-212ENST00000616140 SSBP3Q9BWW4 388 aaPredicted RBP11.88□□□□□ -0.51
CPSF1-212ENST00000616140 ZNF729A6NN14 1252 aaPredicted RBP11.87□□□□□ -0.51
CPSF1-212ENST00000616140 SRP19P09132 144 aaKnown RBP11.87□□□□□ -0.51
CPSF1-212ENST00000616140 GCHFRP30047 84 aa11.87□□□□□ -0.51
CPSF1-212ENST00000616140 NMUP48645 174 aa11.87□□□□□ -0.51
CPSF1-212ENST00000616140 OR9G1Q8NH87 305 aa11.87□□□□□ -0.51
CPSF1-212ENST00000616140 TMEM189A5PLL7 270 aa11.87□□□□□ -0.51
CPSF1-212ENST00000616140 NDUFA2O43678 99 aa11.87□□□□□ -0.51
CPSF1-212ENST00000616140 LEPROTL1O95214 131 aa11.87□□□□□ -0.51
CPSF1-212ENST00000616140 UMODP07911 640 aa11.87□□□□□ -0.51
CPSF1-212ENST00000616140 CBLN1P23435 193 aa11.87□□□□□ -0.51
CPSF1-212ENST00000616140 FCGR2BP31994 310 aaPredicted RBP11.87□□□□□ -0.51
CPSF1-212ENST00000616140 GLRXP35754 106 aa11.87□□□□□ -0.51
CPSF1-212ENST00000616140 FAM201AQ5SY85 155 aa11.87□□□□□ -0.51
CPSF1-212ENST00000616140 GUCD1Q96NT3 240 aa11.87□□□□□ -0.51
CPSF1-212ENST00000616140 GGACTQ9BVM4 153 aa11.87□□□□□ -0.51
CPSF1-212ENST00000616140 NPCDR1Q9BY65 106 aa11.87□□□□□ -0.51
CPSF1-212ENST00000616140 KIR2DL2P43627 348 aaPredicted RBP11.87□□□□□ -0.51
CPSF1-212ENST00000616140 MYOZ3Q8TDC0 251 aa11.87□□□□□ -0.51
CPSF1-212ENST00000616140 SLX1AQ9BQ83 275 aa11.87□□□□□ -0.51
CPSF1-212ENST00000616140 DCAF16Q9NXF7 216 aa11.87□□□□□ -0.51
CPSF1-212ENST00000616140 A6NDN8 102 aa11.86□□□□□ -0.51
CPSF1-212ENST00000616140 OR4B1Q8NGF8 309 aa11.86□□□□□ -0.51
CPSF1-212ENST00000616140 SFRP2Q96HF1 295 aa11.86□□□□□ -0.51
CPSF1-212ENST00000616140 PGLYRP4Q96LB8 373 aa11.86□□□□□ -0.51
CPSF1-212ENST00000616140 SFXN3Q9BWM7 321 aa11.86□□□□□ -0.51
CPSF1-212ENST00000616140 IGKV1D-13A0A0B4J2D9 117 aa11.86□□□□□ -0.51
CPSF1-212ENST00000616140 FBLL1A6NHQ2 334 aaKnown RBP11.86□□□□□ -0.51
CPSF1-212ENST00000616140 CA2P00918 260 aa11.86□□□□□ -0.51
CPSF1-212ENST00000616140 IGKV1-13P0DP09 117 aa11.86□□□□□ -0.51
CPSF1-212ENST00000616140 CYP2G1PQ6ZSU1 146 aa11.86□□□□□ -0.51
CPSF1-212ENST00000616140 OR13A1Q8NGR1 328 aa11.86□□□□□ -0.51
CPSF1-212ENST00000616140 GP6Q9HCN6 339 aa11.86□□□□□ -0.51
CPSF1-212ENST00000616140 ANK1P16157 1881 aa11.86□□□□□ -0.51
CPSF1-212ENST00000616140 WNK3Q9BYP7 1800 aa11.86□□□□□ -0.51
CPSF1-212ENST00000616140 IGHV3-35A0A0C4DH35 117 aa11.86□□□□□ -0.51
CPSF1-212ENST00000616140 IFNL4K9M1U5 179 aa11.86□□□□□ -0.51
CPSF1-212ENST00000616140 ABLIM2Q6H8Q1 611 aa11.86□□□□□ -0.51
CPSF1-212ENST00000616140 ACP7Q6ZNF0 438 aa11.86□□□□□ -0.51
CPSF1-212ENST00000616140 WBP1Q96G27 269 aa11.86□□□□□ -0.51
CPSF1-212ENST00000616140 PLCE1Q9P212 2302 aa11.86□□□□□ -0.51
CPSF1-212ENST00000616140 TCF21O43680 179 aa11.86□□□□□ -0.51
CPSF1-212ENST00000616140 CKS2P33552 79 aa11.86□□□□□ -0.51
CPSF1-212ENST00000616140 HINT1P49773 126 aaPredicted RBP11.86□□□□□ -0.51
CPSF1-212ENST00000616140 TWIST1Q15672 202 aa11.86□□□□□ -0.51
CPSF1-212ENST00000616140 CENPWQ5EE01 88 aa11.86□□□□□ -0.51
CPSF1-212ENST00000616140 TMEM78Q5T7P6 136 aa11.86□□□□□ -0.51
CPSF1-212ENST00000616140 ZNF841Q6ZN19 808 aa11.86□□□□□ -0.51
CPSF1-212ENST00000616140 KLHDC3Q9BQ90 382 aa11.86□□□□□ -0.51
CPSF1-212ENST00000616140 IGKV1D-8A0A087WSZ0 117 aa11.85□□□□□ -0.51
CPSF1-212ENST00000616140 NRN1LQ496H8 165 aa11.85□□□□□ -0.51
CPSF1-212ENST00000616140 PEAR1Q5VY43 1037 aaPredicted RBP11.85□□□□□ -0.51
CPSF1-212ENST00000616140 RBPMS2Q6ZRY4 209 aaKnown RBP11.85□□□□□ -0.51
CPSF1-212ENST00000616140 PPIAL4CA0A0B4J2A2 164 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 89.8 ms