RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 S100A11P31949 105 aa11.47□□□□□ -0.57
USP39-220ENST00000613444 OR2B8PP59922 312 aa11.47□□□□□ -0.57
USP39-220ENST00000613444 SSX2Q16385 188 aa11.47□□□□□ -0.57
USP39-220ENST00000613444 INO80EQ8NBZ0 244 aaPredicted RBP11.47□□□□□ -0.57
USP39-220ENST00000613444 MS4A7Q9GZW8 240 aaPredicted RBP11.47□□□□□ -0.57
USP39-220ENST00000613444 BET1LQ9NYM9 111 aa11.47□□□□□ -0.57
USP39-220ENST00000613444 AUP1Q9Y679 476 aa11.47□□□□□ -0.57
USP39-220ENST00000613444 A0A0D9SG52 128 aa11.47□□□□□ -0.57
USP39-220ENST00000613444 OOSP1A8MZH6 123 aa11.47□□□□□ -0.57
USP39-220ENST00000613444 SYNGR2O43760 224 aa11.47□□□□□ -0.57
USP39-220ENST00000613444 AVPP01185 164 aa11.47□□□□□ -0.57
USP39-220ENST00000613444 IGHV4-31P0DP07 118 aa11.47□□□□□ -0.57
USP39-220ENST00000613444 GATA3P23771 443 aa11.47□□□□□ -0.57
USP39-220ENST00000613444 SAA4P35542 130 aa11.47□□□□□ -0.57
USP39-220ENST00000613444 P2RY1P47900 373 aa11.47□□□□□ -0.57
USP39-220ENST00000613444 RPS16P62249 146 aaKnown RBP11.47□□□□□ -0.57
USP39-220ENST00000613444 OPCMLQ14982 345 aa11.47□□□□□ -0.57
USP39-220ENST00000613444 PDLIM3Q53GG5 364 aaPredicted RBP11.47□□□□□ -0.57
USP39-220ENST00000613444 ZNF429Q86V71 674 aa11.47□□□□□ -0.57
USP39-220ENST00000613444 WFDC11Q8NEX6 87 aa11.47□□□□□ -0.57
USP39-220ENST00000613444 ARL6Q9H0F7 186 aa11.47□□□□□ -0.57
USP39-220ENST00000613444 TMEM14BQ9NUH8 114 aa11.47□□□□□ -0.57
USP39-220ENST00000613444 C15orf61A6NNL5 157 aa11.46□□□□□ -0.57
USP39-220ENST00000613444 UPK2O00526 184 aa11.46□□□□□ -0.57
USP39-220ENST00000613444 NPFFO15130 113 aa11.46□□□□□ -0.57
USP39-220ENST00000613444 VENTXO95231 258 aa11.46□□□□□ -0.57
USP39-220ENST00000613444 CD1BP29016 333 aa11.46□□□□□ -0.57
USP39-220ENST00000613444 LGALS4P56470 323 aa11.46□□□□□ -0.57
USP39-220ENST00000613444 UBE2KP61086 200 aa11.46□□□□□ -0.57
USP39-220ENST00000613444 MRGPRG-AS1Q2M3A8 158 aa11.46□□□□□ -0.57
USP39-220ENST00000613444 TMEM249Q2WGJ8 235 aa11.46□□□□□ -0.57
USP39-220ENST00000613444 FBLN7Q53RD9 439 aa11.46□□□□□ -0.57
USP39-220ENST00000613444 MALSU1Q96EH3 234 aa11.46□□□□□ -0.57
USP39-220ENST00000613444 AIFM2Q9BRQ8 373 aa11.46□□□□□ -0.57
USP39-220ENST00000613444 RBKSQ9H477 322 aa11.46□□□□□ -0.57
USP39-220ENST00000613444 C7orf69Q9H7B7 122 aa11.46□□□□□ -0.57
USP39-220ENST00000613444 FOXA2Q9Y261 457 aaPredicted RBP11.46□□□□□ -0.57
USP39-220ENST00000613444 RPL12P30050 165 aaKnown RBP11.45□□□□□ -0.58
USP39-220ENST00000613444 LGALS7P47929 136 aa11.45□□□□□ -0.58
USP39-220ENST00000613444 OR52E5Q8NH55 327 aa11.45□□□□□ -0.58
USP39-220ENST00000613444 OR4A16Q8NH70 328 aa11.45□□□□□ -0.58
USP39-220ENST00000613444 RAB40CQ96S21 281 aa11.45□□□□□ -0.58
USP39-220ENST00000613444 LYRM2Q9NU23 88 aaPredicted RBP11.45□□□□□ -0.58
USP39-220ENST00000613444 IGHV1-69DA0A0B4J2H0 117 aa11.45□□□□□ -0.58
USP39-220ENST00000613444 WRBO00258 174 aa11.45□□□□□ -0.58
USP39-220ENST00000613444 KBTBD11O94819 623 aa11.45□□□□□ -0.58
USP39-220ENST00000613444 IGHV1-69P01742 117 aa11.45□□□□□ -0.58
USP39-220ENST00000613444 CRYGBP07316 175 aa11.45□□□□□ -0.58
USP39-220ENST00000613444 IGHV4-38-2P0DP08 117 aa11.45□□□□□ -0.58
USP39-220ENST00000613444 CNTFRP26992 372 aa11.45□□□□□ -0.58
USP39-220ENST00000613444 CCDC144NLQ6NUI1 221 aa11.45□□□□□ -0.58
USP39-220ENST00000613444 OR2C3Q8N628 320 aa11.45□□□□□ -0.58
USP39-220ENST00000613444 ZDHHC16Q969W1 377 aa11.45□□□□□ -0.58
USP39-220ENST00000613444 FOXC2Q99958 501 aa11.45□□□□□ -0.58
USP39-220ENST00000613444 WSB1Q9Y6I7 421 aa11.45□□□□□ -0.58
USP39-220ENST00000613444 FLNAP21333 2647 aaKnown RBP11.45□□□□□ -0.58
USP39-220ENST00000613444 TRAV40A0A0B4J280 105 aa11.44□□□□□ -0.58
USP39-220ENST00000613444 FAM24AA6NFZ4 105 aa11.44□□□□□ -0.58
USP39-220ENST00000613444 RBMXL2O75526 392 aaKnown RBP11.44□□□□□ -0.58
USP39-220ENST00000613444 IAPPP10997 89 aa11.44□□□□□ -0.58
USP39-220ENST00000613444 MYOD1P15172 320 aa11.44□□□□□ -0.58
USP39-220ENST00000613444 PVALBP20472 110 aaPredicted RBP11.44□□□□□ -0.58
USP39-220ENST00000613444 KLF17Q5JT82 389 aaPredicted RBP11.44□□□□□ -0.58
USP39-220ENST00000613444 RUSC1-AS1Q66K80 236 aa11.44□□□□□ -0.58
USP39-220ENST00000613444 TMEM167AQ8TBQ9 72 aa11.44□□□□□ -0.58
USP39-220ENST00000613444 BSCL2Q96G97 398 aaPredicted RBP11.44□□□□□ -0.58
USP39-220ENST00000613444 SMIM8Q96KF7 97 aa11.44□□□□□ -0.58
USP39-220ENST00000613444 GON7Q9BXV9 100 aa11.44□□□□□ -0.58
USP39-220ENST00000613444 IGHV3OR16-10A0A075B7F0 116 aa11.44□□□□□ -0.58
USP39-220ENST00000613444 IGSF23A1L1A6 192 aa11.44□□□□□ -0.58
USP39-220ENST00000613444 SPCS3P61009 180 aa11.44□□□□□ -0.58
USP39-220ENST00000613444 GPR157Q5UAW9 335 aa11.44□□□□□ -0.58
USP39-220ENST00000613444 RNF5Q99942 180 aa11.44□□□□□ -0.58
USP39-220ENST00000613444 TPSG1Q9NRR2 321 aa11.44□□□□□ -0.58
USP39-220ENST00000613444 BCL2L11O43521 198 aa11.43□□□□□ -0.58
USP39-220ENST00000613444 SLC25A17O43808 307 aa11.43□□□□□ -0.58
USP39-220ENST00000613444 GPR137BO60478 399 aa11.43□□□□□ -0.58
USP39-220ENST00000613444 TSC22D2O75157 780 aa11.43□□□□□ -0.58
USP39-220ENST00000613444 MED6O75586 246 aa11.43□□□□□ -0.58
USP39-220ENST00000613444 TGFAP01135 160 aa11.43□□□□□ -0.58
USP39-220ENST00000613444 CD24P25063 80 aa11.43□□□□□ -0.58
USP39-220ENST00000613444 TAS2R30P59541 319 aa11.43□□□□□ -0.58
USP39-220ENST00000613444 VAMP2P63027 116 aa11.43□□□□□ -0.58
USP39-220ENST00000613444 EBI3Q14213 229 aa11.43□□□□□ -0.58
USP39-220ENST00000613444 SPINK9Q5DT21 86 aa11.43□□□□□ -0.58
USP39-220ENST00000613444 CLEC9AQ6UXN8 241 aa11.43□□□□□ -0.58
USP39-220ENST00000613444 TMEM252Q8N6L7 170 aa11.43□□□□□ -0.58
USP39-220ENST00000613444 OR4A5Q8NH83 315 aa11.43□□□□□ -0.58
USP39-220ENST00000613444 PRNDQ9UKY0 176 aa11.43□□□□□ -0.58
USP39-220ENST00000613444 TCF19Q9Y242 345 aa11.43□□□□□ -0.58
USP39-220ENST00000613444 IGKV1D-33P01593 117 aa11.43□□□□□ -0.58
USP39-220ENST00000613444 IGKV1-33P01594 117 aa11.43□□□□□ -0.58
USP39-220ENST00000613444 NUP62P37198 522 aaPredicted RBP11.43□□□□□ -0.58
USP39-220ENST00000613444 HSPE1P61604 102 aaKnown RBP11.43□□□□□ -0.58
USP39-220ENST00000613444 EWSR1Q01844 656 aaKnown RBP eCLIP11.43□□□□□ -0.58
USP39-220ENST00000613444 NHLH2Q02577 135 aa11.43□□□□□ -0.58
USP39-220ENST00000613444 PSG5Q15238 335 aa11.43□□□□□ -0.58
USP39-220ENST00000613444 BRD3OSQ6XYD6 125 aa11.43□□□□□ -0.58
USP39-220ENST00000613444 CIARTQ8N365 385 aaPredicted RBP11.43□□□□□ -0.58
USP39-220ENST00000613444 Q8N6K4 173 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms