RNA–Protein interactions for RNA: ENST00000600733.5

SHKBP1-225, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5 BASIC

Gene SHKBP1, Length 2,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-225ENST00000600733 OR2T10Q8NGZ9 312 aa16.71■□□□□ 0.27
SHKBP1-225ENST00000600733 S1PR3Q99500 378 aa16.71■□□□□ 0.27
SHKBP1-225ENST00000600733 ZMAT5Q9UDW3 170 aaKnown RBP16.71■□□□□ 0.27
SHKBP1-225ENST00000600733 SPAARA0A1B0GVQ0 90 aa16.71■□□□□ 0.27
SHKBP1-225ENST00000600733 PGPEP1LA6NFU8 196 aa16.71■□□□□ 0.27
SHKBP1-225ENST00000600733 FAM90A9PA6NNJ1 464 aa16.71■□□□□ 0.27
SHKBP1-225ENST00000600733 NDUFS6O75380 124 aaKnown RBP16.71■□□□□ 0.27
SHKBP1-225ENST00000600733 AMBPP02760 352 aa16.71■□□□□ 0.27
SHKBP1-225ENST00000600733 FAM3BP58499 235 aaPredicted RBP16.71■□□□□ 0.27
SHKBP1-225ENST00000600733 PRSS8Q16651 343 aa16.71■□□□□ 0.27
SHKBP1-225ENST00000600733 VHLLQ6RSH7 139 aa16.71■□□□□ 0.27
SHKBP1-225ENST00000600733 TMEM37Q8WXS4 190 aa16.71■□□□□ 0.27
SHKBP1-225ENST00000600733 RAB1CQ92928 201 aa16.71■□□□□ 0.27
SHKBP1-225ENST00000600733 RHOVQ96L33 236 aa16.71■□□□□ 0.27
SHKBP1-225ENST00000600733 TMEM204Q9BSN7 226 aa16.71■□□□□ 0.27
SHKBP1-225ENST00000600733 ASCL3Q9NQ33 180 aa16.71■□□□□ 0.27
SHKBP1-225ENST00000600733 FUT9Q9Y231 359 aa16.71■□□□□ 0.27
SHKBP1-225ENST00000600733 F2RL2O00254 374 aa16.7■□□□□ 0.26
SHKBP1-225ENST00000600733 PDE6DO43924 150 aa16.7■□□□□ 0.26
SHKBP1-225ENST00000600733 GGCTO75223 188 aaKnown RBP16.7■□□□□ 0.26
SHKBP1-225ENST00000600733 ARL14EPLP0DKL9 152 aa16.7■□□□□ 0.26
SHKBP1-225ENST00000600733 RPP30P78346 268 aaKnown RBP16.7■□□□□ 0.26
SHKBP1-225ENST00000600733 CR1LQ2VPA4 569 aa16.7■□□□□ 0.26
SHKBP1-225ENST00000600733 DEFB124Q8NES8 71 aa16.7■□□□□ 0.26
SHKBP1-225ENST00000600733 GGTLC1Q9BX51 225 aa16.7■□□□□ 0.26
SHKBP1-225ENST00000600733 PXMP4Q9Y6I8 212 aa16.7■□□□□ 0.26
SHKBP1-225ENST00000600733 AHRRA9YTQ3 701 aa16.7■□□□□ 0.26
SHKBP1-225ENST00000600733 M0R1B8 84 aa16.7■□□□□ 0.26
SHKBP1-225ENST00000600733 RBFOX2O43251 390 aaKnown RBP eCLIP16.7■□□□□ 0.26
SHKBP1-225ENST00000600733 COL8A2P25067 703 aa16.7■□□□□ 0.26
SHKBP1-225ENST00000600733 OPRK1P41145 380 aa16.7■□□□□ 0.26
SHKBP1-225ENST00000600733 PDLIM3Q53GG5 364 aaPredicted RBP16.7■□□□□ 0.26
SHKBP1-225ENST00000600733 ZNF114Q8NC26 417 aa16.7■□□□□ 0.26
SHKBP1-225ENST00000600733 PPP1R35Q8TAP8 253 aa16.7■□□□□ 0.26
SHKBP1-225ENST00000600733 CALYQ9NYX4 217 aa16.7■□□□□ 0.26
SHKBP1-225ENST00000600733 CNOT1A5YKK6 2376 aaKnown RBP16.7■□□□□ 0.26
SHKBP1-225ENST00000600733 SMG1Q96Q15 3661 aaKnown RBP16.69■□□□□ 0.26
SHKBP1-225ENST00000600733 SPRY3O43610 288 aa16.69■□□□□ 0.26
SHKBP1-225ENST00000600733 MPDU1O75352 247 aa16.69■□□□□ 0.26
SHKBP1-225ENST00000600733 DEFB109BQ30KR1 87 aa16.69■□□□□ 0.26
SHKBP1-225ENST00000600733 OR52E5Q8NH55 327 aa16.69■□□□□ 0.26
SHKBP1-225ENST00000600733 TCF19Q9Y242 345 aa16.69■□□□□ 0.26
SHKBP1-225ENST00000600733 C1QTNF9P0C862 333 aa16.68■□□□□ 0.26
SHKBP1-225ENST00000600733 SRP14P37108 136 aaKnown RBP16.68■□□□□ 0.26
SHKBP1-225ENST00000600733 DEFA6Q01524 100 aa16.68■□□□□ 0.26
SHKBP1-225ENST00000600733 ACTL10Q5JWF8 245 aa16.68■□□□□ 0.26
SHKBP1-225ENST00000600733 FAM78BQ5VT40 261 aa16.68■□□□□ 0.26
SHKBP1-225ENST00000600733 DUX4L9Q6RFH8 374 aaPredicted RBP16.68■□□□□ 0.26
SHKBP1-225ENST00000600733 SSMEM1Q8WWF3 244 aa16.68■□□□□ 0.26
SHKBP1-225ENST00000600733 PRO1933Q9H354 126 aa16.68■□□□□ 0.26
SHKBP1-225ENST00000600733 KCNIP2Q9NS61 270 aa16.68■□□□□ 0.26
SHKBP1-225ENST00000600733 GATCO43716 136 aaKnown RBP16.68■□□□□ 0.26
SHKBP1-225ENST00000600733 FTH1P19P0C7X4 201 aa16.68■□□□□ 0.26
SHKBP1-225ENST00000600733 NUBP1P53384 320 aa16.68■□□□□ 0.26
SHKBP1-225ENST00000600733 TMEM249Q2WGJ8 235 aa16.68■□□□□ 0.26
SHKBP1-225ENST00000600733 DDB2Q92466 427 aa16.68■□□□□ 0.26
SHKBP1-225ENST00000600733 C1orf159Q96HA4 380 aa16.68■□□□□ 0.26
SHKBP1-225ENST00000600733 DSCAML1Q8TD84 2053 aa16.68■□□□□ 0.26
SHKBP1-225ENST00000600733 CFHR2P36980 270 aa16.67■□□□□ 0.26
SHKBP1-225ENST00000600733 RP1L1Q8IWN7 2480 aaPredicted RBP16.67■□□□□ 0.26
SHKBP1-225ENST00000600733 C1orf174Q8IYL3 243 aa16.67■□□□□ 0.26
SHKBP1-225ENST00000600733 ITLN1Q8WWA0 313 aa16.67■□□□□ 0.26
SHKBP1-225ENST00000600733 TRBV20OR9-2A0A075B6H5 130 aa16.67■□□□□ 0.26
SHKBP1-225ENST00000600733 TMPRSS2O15393 492 aa16.67■□□□□ 0.26
SHKBP1-225ENST00000600733 GPX4P36969 197 aaPredicted RBP16.67■□□□□ 0.26
SHKBP1-225ENST00000600733 TMPRSS3P57727 454 aa16.67■□□□□ 0.26
SHKBP1-225ENST00000600733 C17orf58Q2M2W7 97 aa16.67■□□□□ 0.26
SHKBP1-225ENST00000600733 CT45A1Q5HYN5 189 aa16.67■□□□□ 0.26
SHKBP1-225ENST00000600733 COA6Q5JTJ3 125 aaKnown RBP16.67■□□□□ 0.26
SHKBP1-225ENST00000600733 CT45A3Q8NHU0 189 aa16.67■□□□□ 0.26
SHKBP1-225ENST00000600733 PLCE1Q9P212 2302 aa16.67■□□□□ 0.26
SHKBP1-225ENST00000600733 SAA2-SAA4A0A096LPE2 208 aa16.66■□□□□ 0.26
SHKBP1-225ENST00000600733 STAG3L2P0CL84 134 aa16.66■□□□□ 0.26
SHKBP1-225ENST00000600733 STAG3L3P0CL85 134 aa16.66■□□□□ 0.26
SHKBP1-225ENST00000600733 SAA2P0DJI9 122 aaPredicted RBP16.66■□□□□ 0.26
SHKBP1-225ENST00000600733 IL3RAP26951 378 aa16.66■□□□□ 0.26
SHKBP1-225ENST00000600733 DNLZQ5SXM8 178 aa16.66■□□□□ 0.26
SHKBP1-225ENST00000600733 KCNIP4Q6PIL6 250 aa16.66■□□□□ 0.26
SHKBP1-225ENST00000600733 PIP4P1Q86T03 277 aa16.66■□□□□ 0.26
SHKBP1-225ENST00000600733 RPRMLQ8N4K4 120 aa16.66■□□□□ 0.26
SHKBP1-225ENST00000600733 OTOGLQ3ZCN5 2332 aa16.66■□□□□ 0.26
SHKBP1-225ENST00000600733 LHBP01229 141 aa16.66■□□□□ 0.26
SHKBP1-225ENST00000600733 TYMSP04818 313 aa16.66■□□□□ 0.26
SHKBP1-225ENST00000600733 KLF3P57682 345 aaPredicted RBP16.66■□□□□ 0.26
SHKBP1-225ENST00000600733 ARSJQ5FYB0 599 aaPredicted RBP16.66■□□□□ 0.26
SHKBP1-225ENST00000600733 ZNF474Q6S9Z5 364 aaPredicted RBP16.66■□□□□ 0.26
SHKBP1-225ENST00000600733 UNQ6494/PRO21346Q6UXR6 183 aa16.66■□□□□ 0.26
SHKBP1-225ENST00000600733 FAM169BQ8N8A8 192 aa16.66■□□□□ 0.26
SHKBP1-225ENST00000600733 OR4S2Q8NH73 311 aa16.66■□□□□ 0.26
SHKBP1-225ENST00000600733 MGAQ8IWI9 3026 aa16.66■□□□□ 0.26
SHKBP1-225ENST00000600733 TTC28Q96AY4 2481 aa16.66■□□□□ 0.26
SHKBP1-225ENST00000600733 C15orf61A6NNL5 157 aa16.65■□□□□ 0.26
SHKBP1-225ENST00000600733 CGB3P0DN86 165 aa16.65■□□□□ 0.26
SHKBP1-225ENST00000600733 CGB7P0DN87 165 aa16.65■□□□□ 0.26
SHKBP1-225ENST00000600733 GZMBP10144 247 aa16.65■□□□□ 0.26
SHKBP1-225ENST00000600733 MYOD1P15172 320 aa16.65■□□□□ 0.26
SHKBP1-225ENST00000600733 LINC00469Q8N7U9 141 aa16.65■□□□□ 0.26
SHKBP1-225ENST00000600733 LSM4Q9Y4Z0 139 aaKnown RBP16.65■□□□□ 0.26
SHKBP1-225ENST00000600733 SCO2A0A1W2PP80 73 aa16.65■□□□□ 0.26
SHKBP1-225ENST00000600733 MBD3L4A6NDZ8 208 aaPredicted RBP16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms