RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, human

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-223	ENST00000600552	FOLR2	P14207	255 aa		13.3	□□□□□ -0.28
SHKBP1-223	ENST00000600552	MYOD1	P15172	320 aa		13.3	□□□□□ -0.28
SHKBP1-223	ENST00000600552	CLEC19A	Q6UXS0	136 aa		13.3	□□□□□ -0.28
SHKBP1-223	ENST00000600552	LGALS14	Q8TCE9	139 aa		13.3	□□□□□ -0.28
SHKBP1-223	ENST00000600552	SECTM1	Q8WVN6	248 aa		13.3	□□□□□ -0.28
SHKBP1-223	ENST00000600552	SACS	Q9NZJ4	4579 aa		13.3	□□□□□ -0.28
SHKBP1-223	ENST00000600552	ZNF785	A8K8V0	405 aa		13.29	□□□□□ -0.28
SHKBP1-223	ENST00000600552	SSX5	O60225	188 aa		13.29	□□□□□ -0.28
SHKBP1-223	ENST00000600552	GGCT	O75223	188 aa	Known RBP	13.29	□□□□□ -0.28
SHKBP1-223	ENST00000600552	SLC22A5	O76082	557 aa		13.29	□□□□□ -0.28
SHKBP1-223	ENST00000600552	NDUFB8	O95169	186 aa		13.29	□□□□□ -0.28
SHKBP1-223	ENST00000600552	IGLV2-14	P01704	120 aa		13.29	□□□□□ -0.28
SHKBP1-223	ENST00000600552	IL6R	P08887	468 aa	Predicted RBP	13.29	□□□□□ -0.28
SHKBP1-223	ENST00000600552	MECP2	P51608	486 aa	Known RBP	13.29	□□□□□ -0.28
SHKBP1-223	ENST00000600552	ARPC4	P59998	168 aa		13.29	□□□□□ -0.28
SHKBP1-223	ENST00000600552	MXD1	Q05195	221 aa		13.29	□□□□□ -0.28
SHKBP1-223	ENST00000600552	DEFB114	Q30KQ6	69 aa		13.29	□□□□□ -0.28
SHKBP1-223	ENST00000600552	MFSD4A	Q8N468	514 aa		13.29	□□□□□ -0.28
SHKBP1-223	ENST00000600552	OR2K2	Q8NGT1	345 aa		13.29	□□□□□ -0.28
SHKBP1-223	ENST00000600552	CACNG8	Q8WXS5	425 aa		13.29	□□□□□ -0.28
SHKBP1-223	ENST00000600552	KCTD12	Q96CX2	325 aa	Known RBP	13.29	□□□□□ -0.28
SHKBP1-223	ENST00000600552	WDR89	Q96FK6	387 aa	Predicted RBP	13.29	□□□□□ -0.28
SHKBP1-223	ENST00000600552	HSD17B10	Q99714	261 aa	Known RBP	13.29	□□□□□ -0.28
SHKBP1-223	ENST00000600552	DCSTAMP	Q9H295	470 aa		13.29	□□□□□ -0.28
SHKBP1-223	ENST00000600552	SRD5A3	Q9H8P0	318 aa		13.29	□□□□□ -0.28
SHKBP1-223	ENST00000600552	ZC4H2	Q9NQZ6	224 aa		13.29	□□□□□ -0.28
SHKBP1-223	ENST00000600552	ANXA10	Q9UJ72	324 aa		13.29	□□□□□ -0.28
SHKBP1-223	ENST00000600552	SSR3	Q9UNL2	185 aa		13.29	□□□□□ -0.28
SHKBP1-223	ENST00000600552	ZNF257	Q9Y2Q1	563 aa		13.29	□□□□□ -0.28
SHKBP1-223	ENST00000600552	TRAV18	A0A075B6X5	111 aa		13.28	□□□□□ -0.28
SHKBP1-223	ENST00000600552	C2orf70	A6NJV1	201 aa		13.28	□□□□□ -0.28
SHKBP1-223	ENST00000600552	OR11H12	B2RN74	326 aa		13.28	□□□□□ -0.28
SHKBP1-223	ENST00000600552	TEX22	C9J3V5	150 aa		13.28	□□□□□ -0.28
SHKBP1-223	ENST00000600552		E7EUB6	86 aa		13.28	□□□□□ -0.28
SHKBP1-223	ENST00000600552	KBTBD11	O94819	623 aa		13.28	□□□□□ -0.28
SHKBP1-223	ENST00000600552	CLEC2L	P0C7M8	214 aa		13.28	□□□□□ -0.28
SHKBP1-223	ENST00000600552	AREG	P15514	252 aa		13.28	□□□□□ -0.28
SHKBP1-223	ENST00000600552	ARL3	P36405	182 aa		13.28	□□□□□ -0.28
SHKBP1-223	ENST00000600552	VSTM2A	Q8TAG5	236 aa		13.28	□□□□□ -0.28
SHKBP1-223	ENST00000600552	HIPK2	Q9H2X6	1198 aa		13.28	□□□□□ -0.28
SHKBP1-223	ENST00000600552	HRASLS	Q9HDD0	168 aa		13.28	□□□□□ -0.28
SHKBP1-223	ENST00000600552	CCL28	Q9NRJ3	127 aa		13.28	□□□□□ -0.28
SHKBP1-223	ENST00000600552	RBMY1B	A6NDE4	496 aa	Known RBP	13.27	□□□□□ -0.29
SHKBP1-223	ENST00000600552	RBMY1E	A6NEQ0	496 aa	Known RBP	13.27	□□□□□ -0.29
SHKBP1-223	ENST00000600552	RBMY1D	P0C7P1	496 aa	Known RBP	13.27	□□□□□ -0.29
SHKBP1-223	ENST00000600552	DEFA4	P12838	97 aa		13.27	□□□□□ -0.29
SHKBP1-223	ENST00000600552	GAL	P22466	123 aa		13.27	□□□□□ -0.29
SHKBP1-223	ENST00000600552	FCGR2C	P31995	323 aa		13.27	□□□□□ -0.29
SHKBP1-223	ENST00000600552	SPART	Q8N0X7	666 aa		13.27	□□□□□ -0.29
SHKBP1-223	ENST00000600552	TMEM167A	Q8TBQ9	72 aa		13.27	□□□□□ -0.29
SHKBP1-223	ENST00000600552	SLC2A9	Q9NRM0	540 aa		13.27	□□□□□ -0.29
SHKBP1-223	ENST00000600552	RHBDL2	Q9NX52	303 aa		13.27	□□□□□ -0.29
SHKBP1-223	ENST00000600552	RAB26	Q9ULW5	256 aa		13.27	□□□□□ -0.29
SHKBP1-223	ENST00000600552	HRAS	P01112	189 aa		13.26	□□□□□ -0.29
SHKBP1-223	ENST00000600552	PSMB6	P28072	239 aa		13.26	□□□□□ -0.29
SHKBP1-223	ENST00000600552	SDC2	P34741	201 aa		13.26	□□□□□ -0.29
SHKBP1-223	ENST00000600552	KIR2DS2	P43631	304 aa		13.26	□□□□□ -0.29
SHKBP1-223	ENST00000600552	BRWD1-AS2	P59051	145 aa		13.26	□□□□□ -0.29
SHKBP1-223	ENST00000600552	FXYD4	P59646	89 aa		13.26	□□□□□ -0.29
SHKBP1-223	ENST00000600552	GABARAPL2	P60520	117 aa		13.26	□□□□□ -0.29
SHKBP1-223	ENST00000600552	IDNK	Q5T6J7	187 aa		13.26	□□□□□ -0.29
SHKBP1-223	ENST00000600552	UBE2U	Q5VVX9	321 aa		13.26	□□□□□ -0.29
SHKBP1-223	ENST00000600552	SFXN4	Q6P4A7	337 aa		13.26	□□□□□ -0.29
SHKBP1-223	ENST00000600552	PUSL1	Q8N0Z8	303 aa	Known RBP	13.26	□□□□□ -0.29
SHKBP1-223	ENST00000600552	GVQW1	Q8N7I0	195 aa		13.26	□□□□□ -0.29
SHKBP1-223	ENST00000600552	EEF1AKMT3	Q96AZ1	226 aa		13.26	□□□□□ -0.29
SHKBP1-223	ENST00000600552	RNF167	Q9H6Y7	350 aa		13.26	□□□□□ -0.29
SHKBP1-223	ENST00000600552	STARD9	Q9P2P6	4700 aa		13.25	□□□□□ -0.29
SHKBP1-223	ENST00000600552	LOC100506127	A0A0U1RQW1	187 aa		13.25	□□□□□ -0.29
SHKBP1-223	ENST00000600552		A0A1B0GW64	132 aa		13.25	□□□□□ -0.29
SHKBP1-223	ENST00000600552	NPIPB5	A8MRT5	1133 aa		13.25	□□□□□ -0.29
SHKBP1-223	ENST00000600552	SULT1C2	O00338	296 aa		13.25	□□□□□ -0.29
SHKBP1-223	ENST00000600552	SCGN	O76038	276 aa		13.25	□□□□□ -0.29
SHKBP1-223	ENST00000600552	DHFR	P00374	187 aa		13.25	□□□□□ -0.29
SHKBP1-223	ENST00000600552	RPA2	P15927	270 aa		13.25	□□□□□ -0.29
SHKBP1-223	ENST00000600552	FGF9	P31371	208 aa	Predicted RBP	13.25	□□□□□ -0.29
SHKBP1-223	ENST00000600552	RPL8	P62917	257 aa	Known RBP	13.25	□□□□□ -0.29
SHKBP1-223	ENST00000600552	FAM106A	Q4KMX7	169 aa		13.25	□□□□□ -0.29
SHKBP1-223	ENST00000600552	ZNF66	Q6ZN08	573 aa		13.25	□□□□□ -0.29
SHKBP1-223	ENST00000600552	TPRA1	Q86W33	373 aa		13.25	□□□□□ -0.29
SHKBP1-223	ENST00000600552	SPAG16	Q8N0X2	631 aa		13.25	□□□□□ -0.29
SHKBP1-223	ENST00000600552	BEST4	Q8NFU0	473 aa		13.25	□□□□□ -0.29
SHKBP1-223	ENST00000600552	OR5H6	Q8NGV6	325 aa		13.25	□□□□□ -0.29
SHKBP1-223	ENST00000600552	FANCD2OS	Q96PS1	177 aa		13.25	□□□□□ -0.29
SHKBP1-223	ENST00000600552	SLC5A7	Q9GZV3	580 aa		13.25	□□□□□ -0.29
SHKBP1-223	ENST00000600552	DMRT1	Q9Y5R6	373 aa		13.25	□□□□□ -0.29
SHKBP1-223	ENST00000600552	IGHV3-35	A0A0C4DH35	117 aa		13.24	□□□□□ -0.29
SHKBP1-223	ENST00000600552	SCAF4	O95104	1147 aa	Known RBP	13.24	□□□□□ -0.29
SHKBP1-223	ENST00000600552	ZNF735	P0CB33	412 aa		13.24	□□□□□ -0.29
SHKBP1-223	ENST00000600552	HLA-G	P17693	338 aa		13.24	□□□□□ -0.29
SHKBP1-223	ENST00000600552	CBLN1	P23435	193 aa		13.24	□□□□□ -0.29
SHKBP1-223	ENST00000600552	MAS1L	P35410	378 aa		13.24	□□□□□ -0.29
SHKBP1-223	ENST00000600552	EIF4EBP1	Q13541	118 aa	Predicted RBP	13.24	□□□□□ -0.29
SHKBP1-223	ENST00000600552	OR4A47	Q6IF82	309 aa		13.24	□□□□□ -0.29
SHKBP1-223	ENST00000600552	LAX1	Q8IWV1	398 aa		13.24	□□□□□ -0.29
SHKBP1-223	ENST00000600552	UXS1	Q8NBZ7	420 aa		13.24	□□□□□ -0.29
SHKBP1-223	ENST00000600552	OR13F1	Q8NGS4	319 aa		13.24	□□□□□ -0.29
SHKBP1-223	ENST00000600552	CCDC140	Q96MF4	163 aa		13.24	□□□□□ -0.29
SHKBP1-223	ENST00000600552	TECR	Q9NZ01	308 aa	Known RBP	13.24	□□□□□ -0.29
SHKBP1-223	ENST00000600552	MEIS3P1	A6NDR6	274 aa		13.23	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms