RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, human

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF1-208	ENST00000600012	RNASE11	Q8TAA1	199 aa	Known RBP	10.12	□□□□□ -0.79
UPF1-208	ENST00000600012	C17orf50	Q8WW18	174 aa		10.12	□□□□□ -0.79
UPF1-208	ENST00000600012	SEC22A	Q96IW7	307 aa		10.12	□□□□□ -0.79
UPF1-208	ENST00000600012	OR10C1	Q96KK4	312 aa		10.12	□□□□□ -0.79
UPF1-208	ENST00000600012	PDCD10	Q9BUL8	212 aa		10.12	□□□□□ -0.79
UPF1-208	ENST00000600012	RANBP3	Q9H6Z4	567 aa	Predicted RBP	10.12	□□□□□ -0.79
UPF1-208	ENST00000600012	HILPDA	Q9Y5L2	63 aa		10.12	□□□□□ -0.79
UPF1-208	ENST00000600012	IGHV1-3	A0A0C4DH29	117 aa		10.11	□□□□□ -0.79
UPF1-208	ENST00000600012	DUXB	A0A1W2PPF3	345 aa		10.11	□□□□□ -0.79
UPF1-208	ENST00000600012		A0A1W2PPI3	338 aa		10.11	□□□□□ -0.79
UPF1-208	ENST00000600012		G3V4G9	280 aa		10.11	□□□□□ -0.79
UPF1-208	ENST00000600012		H7C2Y5	167 aa		10.11	□□□□□ -0.79
UPF1-208	ENST00000600012	CRYZL1	O95825	349 aa		10.11	□□□□□ -0.79
UPF1-208	ENST00000600012	IFNA21	P01568	189 aa		10.11	□□□□□ -0.79
UPF1-208	ENST00000600012	G6PC	P35575	357 aa		10.11	□□□□□ -0.79
UPF1-208	ENST00000600012	CEACAM3	P40198	252 aa		10.11	□□□□□ -0.79
UPF1-208	ENST00000600012	LGALS4	P56470	323 aa		10.11	□□□□□ -0.79
UPF1-208	ENST00000600012	RTL8B	Q17RB0	113 aa		10.11	□□□□□ -0.79
UPF1-208	ENST00000600012	IZUMO4	Q1ZYL8	232 aa		10.11	□□□□□ -0.79
UPF1-208	ENST00000600012	KPRP	Q5T749	579 aa	Predicted RBP	10.11	□□□□□ -0.79
UPF1-208	ENST00000600012	MINOS1	Q5TGZ0	78 aa		10.11	□□□□□ -0.79
UPF1-208	ENST00000600012	MOB3B	Q86TA1	216 aa		10.11	□□□□□ -0.79
UPF1-208	ENST00000600012	FAM219A	Q8IW50	185 aa		10.11	□□□□□ -0.79
UPF1-208	ENST00000600012	DYNAP	Q8N1N2	210 aa		10.11	□□□□□ -0.79
UPF1-208	ENST00000600012	OR5AN1	Q8NGI8	311 aa		10.11	□□□□□ -0.79
UPF1-208	ENST00000600012	CD300LF	Q8TDQ1	290 aa		10.11	□□□□□ -0.79
UPF1-208	ENST00000600012	SSX3	Q99909	188 aa		10.11	□□□□□ -0.79
UPF1-208	ENST00000600012	FAM212B	Q9NTI7	297 aa	Predicted RBP	10.11	□□□□□ -0.79
UPF1-208	ENST00000600012	TMED3	Q9Y3Q3	217 aa		10.11	□□□□□ -0.79
UPF1-208	ENST00000600012	TBL2	Q9Y4P3	447 aa	Known RBP	10.11	□□□□□ -0.79
UPF1-208	ENST00000600012	MINOS1-NBL1	R4GNA1	71 aa		10.11	□□□□□ -0.79
UPF1-208	ENST00000600012	BOLA2-SMG1P6	H3BVE0	249 aa		10.1	□□□□□ -0.79
UPF1-208	ENST00000600012	RBFOX2	O43251	390 aa	Known RBP eCLIP	10.1	□□□□□ -0.79
UPF1-208	ENST00000600012	TXNL1	O43396	289 aa		10.1	□□□□□ -0.79
UPF1-208	ENST00000600012	OR2A4	O95047	310 aa		10.1	□□□□□ -0.79
UPF1-208	ENST00000600012	HPRT1	P00492	218 aa		10.1	□□□□□ -0.79
UPF1-208	ENST00000600012	KRAS	P01116	189 aa		10.1	□□□□□ -0.79
UPF1-208	ENST00000600012	IGKV1-16	P04430	117 aa		10.1	□□□□□ -0.79
UPF1-208	ENST00000600012	GIP	P09681	153 aa	Predicted RBP	10.1	□□□□□ -0.79
UPF1-208	ENST00000600012	SSX2	Q16385	188 aa		10.1	□□□□□ -0.79
UPF1-208	ENST00000600012	AANAT	Q16613	207 aa		10.1	□□□□□ -0.79
UPF1-208	ENST00000600012	IAH1	Q2TAA2	248 aa	Predicted RBP	10.1	□□□□□ -0.79
UPF1-208	ENST00000600012	LRRC75B	Q2VPJ9	315 aa		10.1	□□□□□ -0.79
UPF1-208	ENST00000600012	NMS	Q5H8A3	153 aa		10.1	□□□□□ -0.79
UPF1-208	ENST00000600012	SAMD5	Q5TGI4	173 aa		10.1	□□□□□ -0.79
UPF1-208	ENST00000600012	SSX9	Q7RTT3	188 aa		10.1	□□□□□ -0.79
UPF1-208	ENST00000600012	REC114	Q7Z4M0	266 aa		10.1	□□□□□ -0.79
UPF1-208	ENST00000600012	OR2T6	Q8NHC8	308 aa		10.1	□□□□□ -0.79
UPF1-208	ENST00000600012	CFHR4	Q92496	578 aa		10.1	□□□□□ -0.79
UPF1-208	ENST00000600012	GPR146	Q96CH1	333 aa		10.1	□□□□□ -0.79
UPF1-208	ENST00000600012	R3HDM4	Q96D70	268 aa		10.1	□□□□□ -0.79
UPF1-208	ENST00000600012	OR2A7	Q96R45	310 aa		10.1	□□□□□ -0.79
UPF1-208	ENST00000600012	MEGF9	Q9H1U4	602 aa		10.1	□□□□□ -0.79
UPF1-208	ENST00000600012	COMMD9	Q9P000	198 aa		10.1	□□□□□ -0.79
UPF1-208	ENST00000600012	SIGLEC9	Q9Y336	463 aa		10.1	□□□□□ -0.79
UPF1-208	ENST00000600012	WASHC3	Q9Y3C0	194 aa		10.1	□□□□□ -0.79
UPF1-208	ENST00000600012	MARCH11	A6NNE9	402 aa		10.09	□□□□□ -0.79
UPF1-208	ENST00000600012	VDAC1	P21796	283 aa		10.09	□□□□□ -0.79
UPF1-208	ENST00000600012	LY6E	Q16553	131 aa		10.09	□□□□□ -0.79
UPF1-208	ENST00000600012	TCTE3	Q8IZS6	198 aa		10.09	□□□□□ -0.79
UPF1-208	ENST00000600012	VKORC1L1	Q8N0U8	176 aa		10.09	□□□□□ -0.79
UPF1-208	ENST00000600012	KLHDC1	Q8N7A1	406 aa		10.09	□□□□□ -0.79
UPF1-208	ENST00000600012	ZBTB8B	Q8NAP8	495 aa	Predicted RBP	10.09	□□□□□ -0.79
UPF1-208	ENST00000600012	LSM10	Q969L4	123 aa	Known RBP	10.09	□□□□□ -0.79
UPF1-208	ENST00000600012	RRNAD1	Q96FB5	475 aa	Known RBP	10.09	□□□□□ -0.79
UPF1-208	ENST00000600012	AJUBA	Q96IF1	538 aa		10.09	□□□□□ -0.79
UPF1-208	ENST00000600012	C2orf50	Q96LR7	162 aa		10.09	□□□□□ -0.79
UPF1-208	ENST00000600012	NPFFR1	Q9GZQ6	430 aa		10.09	□□□□□ -0.79
UPF1-208	ENST00000600012	PLEKHA2	Q9HB19	425 aa		10.09	□□□□□ -0.79
UPF1-208	ENST00000600012	GSKIP	Q9P0R6	139 aa		10.09	□□□□□ -0.79
UPF1-208	ENST00000600012		G3V3Q6	166 aa		10.08	□□□□□ -0.8
UPF1-208	ENST00000600012	SHOX	O15266	292 aa		10.08	□□□□□ -0.8
UPF1-208	ENST00000600012	NXPH3	O95157	252 aa		10.08	□□□□□ -0.8
UPF1-208	ENST00000600012		P0C879	139 aa		10.08	□□□□□ -0.8
UPF1-208	ENST00000600012	RRAS	P10301	218 aa		10.08	□□□□□ -0.8
UPF1-208	ENST00000600012	NQO2	P16083	231 aa		10.08	□□□□□ -0.8
UPF1-208	ENST00000600012	RAP2B	P61225	183 aa		10.08	□□□□□ -0.8
UPF1-208	ENST00000600012	TAGLN	Q01995	201 aa	Known RBP	10.08	□□□□□ -0.8
UPF1-208	ENST00000600012	LRRC37A5P	Q49AS3	106 aa		10.08	□□□□□ -0.8
UPF1-208	ENST00000600012		Q5BKY6	102 aa		10.08	□□□□□ -0.8
UPF1-208	ENST00000600012		Q6ZRM9	215 aa		10.08	□□□□□ -0.8
UPF1-208	ENST00000600012	PDPN	Q86YL7	162 aa		10.08	□□□□□ -0.8
UPF1-208	ENST00000600012	OR8H3	Q8N146	312 aa		10.08	□□□□□ -0.8
UPF1-208	ENST00000600012	C11orf44	Q8N8P7	122 aa		10.08	□□□□□ -0.8
UPF1-208	ENST00000600012	DMBX1	Q8NFW5	382 aa		10.08	□□□□□ -0.8
UPF1-208	ENST00000600012	OR2T35	Q8NGX2	323 aa		10.08	□□□□□ -0.8
UPF1-208	ENST00000600012	HARBI1	Q96MB7	349 aa		10.08	□□□□□ -0.8
UPF1-208	ENST00000600012	SPIN2A	Q99865	258 aa		10.08	□□□□□ -0.8
UPF1-208	ENST00000600012	SPIN2B	Q9BPZ2	258 aa		10.08	□□□□□ -0.8
UPF1-208	ENST00000600012	CACNG5	Q9UF02	275 aa		10.08	□□□□□ -0.8
UPF1-208	ENST00000600012	TNC	P24821	2201 aa		10.07	□□□□□ -0.8
UPF1-208	ENST00000600012	PIGBOS1	A0A0B4J2F0	54 aa		10.07	□□□□□ -0.8
UPF1-208	ENST00000600012	SRRM4	A7MD48	611 aa	Known RBP	10.07	□□□□□ -0.8
UPF1-208	ENST00000600012	OOSP1	A8MZH6	123 aa		10.07	□□□□□ -0.8
UPF1-208	ENST00000600012	ATG12	O94817	140 aa		10.07	□□□□□ -0.8
UPF1-208	ENST00000600012	SCGB1D2	O95969	90 aa		10.07	□□□□□ -0.8
UPF1-208	ENST00000600012	OR9G9	P0C7N8	305 aa		10.07	□□□□□ -0.8
UPF1-208	ENST00000600012	CD24	P25063	80 aa		10.07	□□□□□ -0.8
UPF1-208	ENST00000600012	MC5R	P33032	325 aa		10.07	□□□□□ -0.8
UPF1-208	ENST00000600012	RAB13	P51153	203 aa		10.07	□□□□□ -0.8

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