RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 FGF7P21781 194 aa11.81□□□□□ -0.52
VRK3-217ENST00000599538 DLX6P56179 175 aa11.81□□□□□ -0.52
VRK3-217ENST00000599538 GNB2P62879 340 aa11.81□□□□□ -0.52
VRK3-217ENST00000599538 ICAM4Q14773 271 aa11.81□□□□□ -0.52
VRK3-217ENST00000599538 HFEQ30201 348 aa11.81□□□□□ -0.52
VRK3-217ENST00000599538 DHRS7BQ6IAN0 325 aaPredicted RBP11.81□□□□□ -0.52
VRK3-217ENST00000599538 RPP25LQ8N5L8 163 aaKnown RBP11.81□□□□□ -0.52
VRK3-217ENST00000599538 CLDND2Q8NHS1 167 aa11.81□□□□□ -0.52
VRK3-217ENST00000599538 SLC35B3Q9H1N7 401 aa11.81□□□□□ -0.52
VRK3-217ENST00000599538 HEYLQ9NQ87 328 aaPredicted RBP11.81□□□□□ -0.52
VRK3-217ENST00000599538 SLC35D1Q9NTN3 355 aa11.81□□□□□ -0.52
VRK3-217ENST00000599538 RALYQ9UKM9 306 aaKnown RBP11.81□□□□□ -0.52
VRK3-217ENST00000599538 IFNA10P01566 189 aa11.8□□□□□ -0.52
VRK3-217ENST00000599538 SERF2P84101 59 aa11.8□□□□□ -0.52
VRK3-217ENST00000599538 DPPA3Q6W0C5 159 aa11.8□□□□□ -0.52
VRK3-217ENST00000599538 ZNF833PQ6ZTB9 187 aa11.8□□□□□ -0.52
VRK3-217ENST00000599538 ZNF429Q86V71 674 aa11.8□□□□□ -0.52
VRK3-217ENST00000599538 C11orf42Q8N5U0 333 aa11.8□□□□□ -0.52
VRK3-217ENST00000599538 Q8N7P7 452 aa11.8□□□□□ -0.52
VRK3-217ENST00000599538 OR13D1Q8NGV5 346 aa11.8□□□□□ -0.52
VRK3-217ENST00000599538 OR52E5Q8NH55 327 aa11.8□□□□□ -0.52
VRK3-217ENST00000599538 RXFP4Q8TDU9 374 aa11.8□□□□□ -0.52
VRK3-217ENST00000599538 PINX1Q96BK5 328 aaKnown RBP11.8□□□□□ -0.52
VRK3-217ENST00000599538 ADTRPQ96IZ2 230 aa11.8□□□□□ -0.52
VRK3-217ENST00000599538 HIPK2Q9H2X6 1198 aa11.8□□□□□ -0.52
VRK3-217ENST00000599538 CACNA1AO00555 2505 aa11.8□□□□□ -0.52
VRK3-217ENST00000599538 DLL1O00548 723 aa11.8□□□□□ -0.52
VRK3-217ENST00000599538 HMGB3O15347 200 aaKnown RBP11.8□□□□□ -0.52
VRK3-217ENST00000599538 OPN1MWP04001 364 aa11.8□□□□□ -0.52
VRK3-217ENST00000599538 OPN1MW2P0DN77 364 aa11.8□□□□□ -0.52
VRK3-217ENST00000599538 OPN1MW3P0DN78 364 aa11.8□□□□□ -0.52
VRK3-217ENST00000599538 MDKP21741 143 aaPredicted RBP11.8□□□□□ -0.52
VRK3-217ENST00000599538 ATP6V1FQ16864 119 aa11.8□□□□□ -0.52
VRK3-217ENST00000599538 VWC2Q2TAL6 325 aa11.8□□□□□ -0.52
VRK3-217ENST00000599538 TMEM30BQ3MIR4 351 aa11.8□□□□□ -0.52
VRK3-217ENST00000599538 PDLIM3Q53GG5 364 aaPredicted RBP11.8□□□□□ -0.52
VRK3-217ENST00000599538 CENPVQ7Z7K6 275 aaPredicted RBP11.8□□□□□ -0.52
VRK3-217ENST00000599538 TMEM204Q9BSN7 226 aa11.8□□□□□ -0.52
VRK3-217ENST00000599538 TMEM14BQ9NUH8 114 aa11.8□□□□□ -0.52
VRK3-217ENST00000599538 BTBD17A6NE02 478 aa11.79□□□□□ -0.52
VRK3-217ENST00000599538 SCAF4O95104 1147 aaKnown RBP11.79□□□□□ -0.52
VRK3-217ENST00000599538 TMEM155Q4W5P6 130 aa11.79□□□□□ -0.52
VRK3-217ENST00000599538 TMEM41BQ5BJD5 291 aa11.79□□□□□ -0.52
VRK3-217ENST00000599538 AVPI1Q5T686 147 aa11.79□□□□□ -0.52
VRK3-217ENST00000599538 OR10A7Q8NGE5 316 aa11.79□□□□□ -0.52
VRK3-217ENST00000599538 NPCDR1Q9BY65 106 aa11.79□□□□□ -0.52
VRK3-217ENST00000599538 GNG13Q9P2W3 67 aa11.79□□□□□ -0.52
VRK3-217ENST00000599538 ARHGAP32A7KAX9 2087 aa11.79□□□□□ -0.52
VRK3-217ENST00000599538 TRAV1-1A0A0B4J248 108 aa11.78□□□□□ -0.52
VRK3-217ENST00000599538 PRSS46E5RG02 174 aa11.78□□□□□ -0.52
VRK3-217ENST00000599538 IL6RP08887 468 aaPredicted RBP11.78□□□□□ -0.52
VRK3-217ENST00000599538 SRP19P09132 144 aaKnown RBP11.78□□□□□ -0.52
VRK3-217ENST00000599538 CEBPGP53567 150 aa11.78□□□□□ -0.52
VRK3-217ENST00000599538 AWAT1Q58HT5 328 aa11.78□□□□□ -0.52
VRK3-217ENST00000599538 ZNF787Q6DD87 383 aa11.78□□□□□ -0.52
VRK3-217ENST00000599538 MBD3L1Q8WWY6 194 aa11.78□□□□□ -0.52
VRK3-217ENST00000599538 FOXA2Q9Y261 457 aaPredicted RBP11.78□□□□□ -0.52
VRK3-217ENST00000599538 ZFP92A6NM28 416 aa11.78□□□□□ -0.52
VRK3-217ENST00000599538 J3QR06 171 aa11.78□□□□□ -0.52
VRK3-217ENST00000599538 HOXA1P49639 335 aaPredicted RBP11.78□□□□□ -0.52
VRK3-217ENST00000599538 POU2AF1Q16633 256 aa11.78□□□□□ -0.52
VRK3-217ENST00000599538 ZNF841Q6ZN19 808 aa11.78□□□□□ -0.52
VRK3-217ENST00000599538 HINT2Q9BX68 163 aa11.78□□□□□ -0.52
VRK3-217ENST00000599538 TIMM9Q9Y5J7 89 aa11.78□□□□□ -0.52
VRK3-217ENST00000599538 H0YJW9 148 aa11.77□□□□□ -0.52
VRK3-217ENST00000599538 HRASP01112 189 aa11.77□□□□□ -0.52
VRK3-217ENST00000599538 HBE1P02100 147 aa11.77□□□□□ -0.52
VRK3-217ENST00000599538 SNRNP70P08621 437 aaKnown RBP11.77□□□□□ -0.52
VRK3-217ENST00000599538 SAA1P0DJI8 122 aaPredicted RBP11.77□□□□□ -0.52
VRK3-217ENST00000599538 CD1BP29016 333 aa11.77□□□□□ -0.52
VRK3-217ENST00000599538 HSPE1P61604 102 aaKnown RBP11.77□□□□□ -0.52
VRK3-217ENST00000599538 ZNF506Q5JVG8 444 aa11.77□□□□□ -0.52
VRK3-217ENST00000599538 CYB561D1Q8N8Q1 229 aa11.77□□□□□ -0.52
VRK3-217ENST00000599538 SLC25A22Q9H936 323 aa11.77□□□□□ -0.52
VRK3-217ENST00000599538 PLXNB1O43157 2135 aa11.77□□□□□ -0.53
VRK3-217ENST00000599538 A0A1W2PPR1 153 aa11.77□□□□□ -0.53
VRK3-217ENST00000599538 H7C2Y5 167 aa11.77□□□□□ -0.53
VRK3-217ENST00000599538 IGHV2-70P01814 119 aa11.77□□□□□ -0.53
VRK3-217ENST00000599538 SOD3P08294 240 aa11.77□□□□□ -0.53
VRK3-217ENST00000599538 IGHV1-8P0DP01 117 aa11.77□□□□□ -0.53
VRK3-217ENST00000599538 UQCRFS1P47985 274 aa11.77□□□□□ -0.53
VRK3-217ENST00000599538 RTL8BQ17RB0 113 aa11.77□□□□□ -0.53
VRK3-217ENST00000599538 GCSAMLQ5JQS6 135 aa11.77□□□□□ -0.53
VRK3-217ENST00000599538 SOHLH1Q5JUK2 328 aa11.77□□□□□ -0.53
VRK3-217ENST00000599538 FFAR4Q5NUL3 377 aa11.77□□□□□ -0.53
VRK3-217ENST00000599538 OR10X1Q8NGY0 326 aa11.77□□□□□ -0.53
VRK3-217ENST00000599538 ST6GALNAC6Q969X2 333 aa11.77□□□□□ -0.53
VRK3-217ENST00000599538 TMPRSS5Q9H3S3 457 aa11.77□□□□□ -0.53
VRK3-217ENST00000599538 RPS10P5Q9NQ39 176 aa11.77□□□□□ -0.53
VRK3-217ENST00000599538 OR51B2Q9Y5P1 312 aa11.77□□□□□ -0.53
VRK3-217ENST00000599538 ASH1LQ9NR48 2969 aaKnown RBP11.76□□□□□ -0.53
VRK3-217ENST00000599538 LOC102723971A0A1B0GUV8 181 aa11.76□□□□□ -0.53
VRK3-217ENST00000599538 SMCO3A2RU48 225 aa11.76□□□□□ -0.53
VRK3-217ENST00000599538 C7orf77A4D0Y5 90 aa11.76□□□□□ -0.53
VRK3-217ENST00000599538 MAP1LC3B2A6NCE7 125 aa11.76□□□□□ -0.53
VRK3-217ENST00000599538 M0R036 132 aa11.76□□□□□ -0.53
VRK3-217ENST00000599538 UPK2O00526 184 aa11.76□□□□□ -0.53
VRK3-217ENST00000599538 NDUFA2O43678 99 aa11.76□□□□□ -0.53
VRK3-217ENST00000599538 OR5AN1Q8NGI8 311 aa11.76□□□□□ -0.53
VRK3-217ENST00000599538 C1orf159Q96HA4 380 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms