RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 COMMD9Q9P000 198 aa12.49□□□□□ -0.41
TRIM28-213ENST00000598355 GPR31O00270 319 aa12.48□□□□□ -0.41
TRIM28-213ENST00000598355 CTDSPLO15194 276 aa12.48□□□□□ -0.41
TRIM28-213ENST00000598355 PGLYRP1O75594 196 aaPredicted RBP12.48□□□□□ -0.41
TRIM28-213ENST00000598355 HPRT1P00492 218 aa12.48□□□□□ -0.41
TRIM28-213ENST00000598355 MAS1LP35410 378 aa12.48□□□□□ -0.41
TRIM28-213ENST00000598355 TPPP2P59282 170 aa12.48□□□□□ -0.41
TRIM28-213ENST00000598355 DGCR2P98153 550 aa12.48□□□□□ -0.41
TRIM28-213ENST00000598355 ZNF616Q08AN1 781 aa12.48□□□□□ -0.41
TRIM28-213ENST00000598355 C10orf55Q5SWW7 151 aa12.48□□□□□ -0.41
TRIM28-213ENST00000598355 REC114Q7Z4M0 266 aa12.48□□□□□ -0.41
TRIM28-213ENST00000598355 CADM3Q8N126 398 aa12.48□□□□□ -0.41
TRIM28-213ENST00000598355 ARRDC1Q8N5I2 433 aa12.48□□□□□ -0.41
TRIM28-213ENST00000598355 OR51H1Q8NH63 302 aa12.48□□□□□ -0.41
TRIM28-213ENST00000598355 OR4A5Q8NH83 315 aa12.48□□□□□ -0.41
TRIM28-213ENST00000598355 RSRP1Q9BUV0 290 aa12.48□□□□□ -0.41
TRIM28-213ENST00000598355 TINAGL1Q9GZM7 467 aaPredicted RBP12.48□□□□□ -0.41
TRIM28-213ENST00000598355 FAM212BQ9NTI7 297 aaPredicted RBP12.48□□□□□ -0.41
TRIM28-213ENST00000598355 RABL2AQ9UBK7 228 aaPredicted RBP12.48□□□□□ -0.41
TRIM28-213ENST00000598355 RABL2BQ9UNT1 228 aa12.48□□□□□ -0.41
TRIM28-213ENST00000598355 TGP01266 2768 aa12.48□□□□□ -0.41
TRIM28-213ENST00000598355 A0A1B0GW64 132 aa12.47□□□□□ -0.41
TRIM28-213ENST00000598355 MSGN1A6NI15 193 aa12.47□□□□□ -0.41
TRIM28-213ENST00000598355 TEX22C9J3V5 150 aa12.47□□□□□ -0.41
TRIM28-213ENST00000598355 M0QYG6 137 aa12.47□□□□□ -0.41
TRIM28-213ENST00000598355 S1PR2O95136 353 aa12.47□□□□□ -0.41
TRIM28-213ENST00000598355 RLN1P04808 185 aa12.47□□□□□ -0.41
TRIM28-213ENST00000598355 OR8U8P0C7N1 319 aa12.47□□□□□ -0.41
TRIM28-213ENST00000598355 F2RP25116 425 aa12.47□□□□□ -0.41
TRIM28-213ENST00000598355 OR4A47Q6IF82 309 aa12.47□□□□□ -0.41
TRIM28-213ENST00000598355 SPIN2AQ99865 258 aa12.47□□□□□ -0.41
TRIM28-213ENST00000598355 SPIN2BQ9BPZ2 258 aa12.47□□□□□ -0.41
TRIM28-213ENST00000598355 SOSTQ9BQB4 213 aa12.47□□□□□ -0.41
TRIM28-213ENST00000598355 AIFM2Q9BRQ8 373 aa12.47□□□□□ -0.41
TRIM28-213ENST00000598355 TRBV9A0A0B4J1U6 114 aa12.46□□□□□ -0.41
TRIM28-213ENST00000598355 E7EUB6 86 aa12.46□□□□□ -0.41
TRIM28-213ENST00000598355 ZNF701M0R085 212 aaPredicted RBP12.46□□□□□ -0.41
TRIM28-213ENST00000598355 TRGV3P03979 118 aa12.46□□□□□ -0.41
TRIM28-213ENST00000598355 CD3DP04234 171 aa12.46□□□□□ -0.41
TRIM28-213ENST00000598355 OR9G9P0C7N8 305 aa12.46□□□□□ -0.41
TRIM28-213ENST00000598355 ZNF735P0CB33 412 aa12.46□□□□□ -0.41
TRIM28-213ENST00000598355 NQO2P16083 231 aa12.46□□□□□ -0.41
TRIM28-213ENST00000598355 CD40LGP29965 261 aa12.46□□□□□ -0.41
TRIM28-213ENST00000598355 TSPAN5P62079 268 aa12.46□□□□□ -0.41
TRIM28-213ENST00000598355 KLK9Q2XQG4 91 aa12.46□□□□□ -0.41
TRIM28-213ENST00000598355 ZNF585BQ52M93 769 aa12.46□□□□□ -0.41
TRIM28-213ENST00000598355 RNASE12Q5GAN4 147 aaKnown RBP12.46□□□□□ -0.41
TRIM28-213ENST00000598355 RNASE10Q5GAN6 216 aaKnown RBP12.46□□□□□ -0.41
TRIM28-213ENST00000598355 LPCAT3Q6P1A2 487 aa12.46□□□□□ -0.41
TRIM28-213ENST00000598355 CMTM1Q8IZ96 169 aa12.46□□□□□ -0.41
TRIM28-213ENST00000598355 TMEM229BQ8NBD8 167 aa12.46□□□□□ -0.41
TRIM28-213ENST00000598355 OR5T1Q8NG75 326 aa12.46□□□□□ -0.41
TRIM28-213ENST00000598355 OR1N2Q8NGR9 330 aa12.46□□□□□ -0.41
TRIM28-213ENST00000598355 FCAMRQ8WWV6 532 aa12.46□□□□□ -0.41
TRIM28-213ENST00000598355 OR5B12Q96R08 314 aa12.46□□□□□ -0.41
TRIM28-213ENST00000598355 ALX4Q9H161 411 aaPredicted RBP12.46□□□□□ -0.41
TRIM28-213ENST00000598355 AURKAIP1Q9NWT8 199 aaPredicted RBP12.46□□□□□ -0.41
TRIM28-213ENST00000598355 KLK9Q9UKQ9 250 aa12.46□□□□□ -0.41
TRIM28-213ENST00000598355 CGB1A6NKQ9 187 aa12.45□□□□□ -0.42
TRIM28-213ENST00000598355 RBMXL2O75526 392 aaKnown RBP12.45□□□□□ -0.42
TRIM28-213ENST00000598355 ACTL6BO94805 426 aa12.45□□□□□ -0.42
TRIM28-213ENST00000598355 RPL27AP46776 148 aaKnown RBP12.45□□□□□ -0.42
TRIM28-213ENST00000598355 TAS2R19P59542 299 aa12.45□□□□□ -0.42
TRIM28-213ENST00000598355 RND3P61587 244 aa12.45□□□□□ -0.42
TRIM28-213ENST00000598355 RPL8P62917 257 aaKnown RBP12.45□□□□□ -0.42
TRIM28-213ENST00000598355 SSX9Q7RTT3 188 aa12.45□□□□□ -0.42
TRIM28-213ENST00000598355 SLC38A6Q8IZM9 456 aa12.45□□□□□ -0.42
TRIM28-213ENST00000598355 TTC9CQ8N5M4 171 aa12.45□□□□□ -0.42
TRIM28-213ENST00000598355 OR4D10Q8NGI6 311 aa12.45□□□□□ -0.42
TRIM28-213ENST00000598355 DGCR14Q96DF8 476 aaKnown RBP12.45□□□□□ -0.42
TRIM28-213ENST00000598355 DIRAS2Q96HU8 199 aa12.45□□□□□ -0.42
TRIM28-213ENST00000598355 MS4A10Q96PG2 267 aa12.45□□□□□ -0.42
TRIM28-213ENST00000598355 SORL1Q92673 2214 aa12.45□□□□□ -0.42
TRIM28-213ENST00000598355 IGHV4OR15-8A0A075B7B6 117 aa12.44□□□□□ -0.42
TRIM28-213ENST00000598355 A0A087WW49 117 aa12.44□□□□□ -0.42
TRIM28-213ENST00000598355 MARCH11A6NNE9 402 aa12.44□□□□□ -0.42
TRIM28-213ENST00000598355 NPIPB5A8MRT5 1133 aa12.44□□□□□ -0.42
TRIM28-213ENST00000598355 LINC01619G3V211 115 aa12.44□□□□□ -0.42
TRIM28-213ENST00000598355 GSTZ1O43708 216 aaPredicted RBP12.44□□□□□ -0.42
TRIM28-213ENST00000598355 PTBP1P26599 531 aaKnown RBP eCLIP12.44□□□□□ -0.42
TRIM28-213ENST00000598355 KRTAP10-11P60412 298 aa12.44□□□□□ -0.42
TRIM28-213ENST00000598355 ZNF45Q02386 682 aa12.44□□□□□ -0.42
TRIM28-213ENST00000598355 ZNF486Q96H40 463 aaPredicted RBP12.44□□□□□ -0.42
TRIM28-213ENST00000598355 PHB2Q99623 299 aa12.44□□□□□ -0.42
TRIM28-213ENST00000598355 C6orf62Q9GZU0 229 aaPredicted RBP12.44□□□□□ -0.42
TRIM28-213ENST00000598355 SLC2A9Q9NRM0 540 aa12.44□□□□□ -0.42
TRIM28-213ENST00000598355 TMEM140Q9NV12 185 aa12.44□□□□□ -0.42
TRIM28-213ENST00000598355 A0A0G2JLM5 398 aa12.43□□□□□ -0.42
TRIM28-213ENST00000598355 UPK2O00526 184 aa12.43□□□□□ -0.42
TRIM28-213ENST00000598355 IGHV3-11P01762 117 aa12.43□□□□□ -0.42
TRIM28-213ENST00000598355 PRB2P02812 416 aaPredicted RBP12.43□□□□□ -0.42
TRIM28-213ENST00000598355 HSPB1P04792 205 aaKnown RBP12.43□□□□□ -0.42
TRIM28-213ENST00000598355 APELAP0DMC3 54 aa12.43□□□□□ -0.42
TRIM28-213ENST00000598355 HLA-GP17693 338 aa12.43□□□□□ -0.42
TRIM28-213ENST00000598355 TNFSF8P32971 234 aa12.43□□□□□ -0.42
TRIM28-213ENST00000598355 PHLDA2Q53GA4 152 aa12.43□□□□□ -0.42
TRIM28-213ENST00000598355 STEAP1BQ6NZ63 245 aa12.43□□□□□ -0.42
TRIM28-213ENST00000598355 ZNF343Q6P1L6 599 aa12.43□□□□□ -0.42
TRIM28-213ENST00000598355 MCFD2Q8NI22 146 aa12.43□□□□□ -0.42
TRIM28-213ENST00000598355 MRGPRFQ96AM1 343 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms