RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 LINC00473A8K010 186 aa12.78□□□□□ -0.36
UPF1-204ENST00000596842 SRSF7Q16629 238 aaKnown RBP eCLIP12.78□□□□□ -0.36
UPF1-204ENST00000596842 LINC00596Q86U02 117 aa12.78□□□□□ -0.36
UPF1-204ENST00000596842 ZNF439Q8NDP4 499 aa12.78□□□□□ -0.36
UPF1-204ENST00000596842 PKIBQ9C010 78 aa12.78□□□□□ -0.36
UPF1-204ENST00000596842 RIF1Q5UIP0 2472 aaKnown RBP12.78□□□□□ -0.36
UPF1-204ENST00000596842 ACTL6BO94805 426 aa12.77□□□□□ -0.36
UPF1-204ENST00000596842 RNPS1Q15287 305 aaKnown RBP12.77□□□□□ -0.36
UPF1-204ENST00000596842 KCNIP4Q6PIL6 250 aa12.77□□□□□ -0.36
UPF1-204ENST00000596842 TMEM14EPQ6UXP3 125 aa12.77□□□□□ -0.36
UPF1-204ENST00000596842 OR13A1Q8NGR1 328 aa12.77□□□□□ -0.36
UPF1-204ENST00000596842 C5orf30Q96GV9 206 aa12.77□□□□□ -0.36
UPF1-204ENST00000596842 TRIB1Q96RU8 372 aa12.77□□□□□ -0.36
UPF1-204ENST00000596842 INTS1Q8N201 2190 aaKnown RBP12.77□□□□□ -0.36
UPF1-204ENST00000596842 GOSR1O95249 250 aa12.77□□□□□ -0.37
UPF1-204ENST00000596842 LINC00614P0C842 121 aa12.77□□□□□ -0.37
UPF1-204ENST00000596842 ABHD12Q8N2K0 398 aa12.77□□□□□ -0.37
UPF1-204ENST00000596842 BEND2Q8NDZ0 799 aa12.77□□□□□ -0.37
UPF1-204ENST00000596842 IMMP2LQ96T52 175 aa12.77□□□□□ -0.37
UPF1-204ENST00000596842 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.77□□□□□ -0.37
UPF1-204ENST00000596842 HOXA6P31267 233 aa12.77□□□□□ -0.37
UPF1-204ENST00000596842 PRR27Q6MZM9 219 aa12.77□□□□□ -0.37
UPF1-204ENST00000596842 TMEM256Q8N2U0 113 aa12.77□□□□□ -0.37
UPF1-204ENST00000596842 SGMS2Q8NHU3 365 aa12.77□□□□□ -0.37
UPF1-204ENST00000596842 TRGV5A0A0B4J1U4 118 aa12.76□□□□□ -0.37
UPF1-204ENST00000596842 PIGBOS1A0A0B4J2F0 54 aa12.76□□□□□ -0.37
UPF1-204ENST00000596842 NRN1LQ496H8 165 aa12.76□□□□□ -0.37
UPF1-204ENST00000596842 MIC13Q5XKP0 118 aa12.76□□□□□ -0.37
UPF1-204ENST00000596842 TMEM242Q9NWH2 141 aa12.76□□□□□ -0.37
UPF1-204ENST00000596842 PCNX2A6NKB5 2137 aa12.76□□□□□ -0.37
UPF1-204ENST00000596842 IGHV3OR15-7A0A075B7D8 119 aa12.76□□□□□ -0.37
UPF1-204ENST00000596842 M0R1X1 148 aa12.76□□□□□ -0.37
UPF1-204ENST00000596842 SP1P08047 785 aa12.76□□□□□ -0.37
UPF1-204ENST00000596842 SP5Q6BEB4 398 aaPredicted RBP12.76□□□□□ -0.37
UPF1-204ENST00000596842 Q6ZR03 302 aa12.76□□□□□ -0.37
UPF1-204ENST00000596842 ZNF114Q8NC26 417 aa12.76□□□□□ -0.37
UPF1-204ENST00000596842 OR4A16Q8NH70 328 aa12.76□□□□□ -0.37
UPF1-204ENST00000596842 CMTM2Q8TAZ6 248 aa12.76□□□□□ -0.37
UPF1-204ENST00000596842 KLF14Q8TD94 323 aaPredicted RBP12.76□□□□□ -0.37
UPF1-204ENST00000596842 BCL2L2Q92843 193 aaPredicted RBP12.76□□□□□ -0.37
UPF1-204ENST00000596842 FBLL1A6NHQ2 334 aaKnown RBP12.76□□□□□ -0.37
UPF1-204ENST00000596842 C17orf112F2Z3M2 114 aa12.76□□□□□ -0.37
UPF1-204ENST00000596842 KLRC4-KLRK1H3BQV0 150 aa12.76□□□□□ -0.37
UPF1-204ENST00000596842 NPPCP23582 126 aa12.76□□□□□ -0.37
UPF1-204ENST00000596842 GPR12P47775 334 aa12.76□□□□□ -0.37
UPF1-204ENST00000596842 ACOT6Q3I5F7 207 aaPredicted RBP12.76□□□□□ -0.37
UPF1-204ENST00000596842 RNFT1Q5M7Z0 435 aa12.76□□□□□ -0.37
UPF1-204ENST00000596842 SIGLECL1Q8N7X8 197 aa12.76□□□□□ -0.37
UPF1-204ENST00000596842 STARD4Q96DR4 205 aa12.76□□□□□ -0.37
UPF1-204ENST00000596842 HSPB7Q9UBY9 170 aa12.76□□□□□ -0.37
UPF1-204ENST00000596842 WISP2O76076 250 aa12.75□□□□□ -0.37
UPF1-204ENST00000596842 ZNF738Q8NE65 137 aa12.75□□□□□ -0.37
UPF1-204ENST00000596842 OR6C3Q9NZP0 311 aa12.75□□□□□ -0.37
UPF1-204ENST00000596842 MDFIC2A0A1B0GVS7 189 aa12.75□□□□□ -0.37
UPF1-204ENST00000596842 CD1BP29016 333 aa12.75□□□□□ -0.37
UPF1-204ENST00000596842 SLC35B1P78383 322 aa12.75□□□□□ -0.37
UPF1-204ENST00000596842 SLC35E1Q96K37 410 aa12.75□□□□□ -0.37
UPF1-204ENST00000596842 IL3RAP26951 378 aa12.75□□□□□ -0.37
UPF1-204ENST00000596842 RPL39P5Q59GN2 51 aa12.75□□□□□ -0.37
UPF1-204ENST00000596842 OR4A47Q6IF82 309 aa12.75□□□□□ -0.37
UPF1-204ENST00000596842 Q8IYB0 196 aa12.75□□□□□ -0.37
UPF1-204ENST00000596842 SH3BGRL2Q9UJC5 107 aa12.75□□□□□ -0.37
UPF1-204ENST00000596842 YLPM1P49750 1951 aaKnown RBP12.74□□□□□ -0.37
UPF1-204ENST00000596842 OR9G9P0C7N8 305 aa12.74□□□□□ -0.37
UPF1-204ENST00000596842 ARL14EPLP0DKL9 152 aa12.74□□□□□ -0.37
UPF1-204ENST00000596842 MGST1P10620 155 aaKnown RBP12.74□□□□□ -0.37
UPF1-204ENST00000596842 CD46P15529 392 aa12.74□□□□□ -0.37
UPF1-204ENST00000596842 CNN1P51911 297 aaKnown RBP12.74□□□□□ -0.37
UPF1-204ENST00000596842 WFDC8Q8IUA0 241 aa12.74□□□□□ -0.37
UPF1-204ENST00000596842 WNT10AQ9GZT5 417 aa12.74□□□□□ -0.37
UPF1-204ENST00000596842 ZNF430Q9H8G1 570 aaPredicted RBP12.74□□□□□ -0.37
UPF1-204ENST00000596842 IL19Q9UHD0 177 aa12.74□□□□□ -0.37
UPF1-204ENST00000596842 MKRN2OSH3BPM6 223 aa12.74□□□□□ -0.37
UPF1-204ENST00000596842 SLC17A3O00476 420 aa12.74□□□□□ -0.37
UPF1-204ENST00000596842 KITLGP21583 273 aa12.74□□□□□ -0.37
UPF1-204ENST00000596842 SPRR3Q9UBC9 169 aa12.74□□□□□ -0.37
UPF1-204ENST00000596842 TRBV6-6A0A0A6YYG2 114 aa12.74□□□□□ -0.37
UPF1-204ENST00000596842 TMEM250H0YL14 139 aa12.74□□□□□ -0.37
UPF1-204ENST00000596842 TNFSF15O95150 251 aa12.74□□□□□ -0.37
UPF1-204ENST00000596842 GNB1P62873 340 aa12.74□□□□□ -0.37
UPF1-204ENST00000596842 MRPS11P82912 194 aaKnown RBP12.74□□□□□ -0.37
UPF1-204ENST00000596842 COQ2Q96H96 371 aa12.74□□□□□ -0.37
UPF1-204ENST00000596842 MANBALQ9NQG1 85 aa12.74□□□□□ -0.37
UPF1-204ENST00000596842 TNRC18O15417 2968 aaPredicted RBP12.73□□□□□ -0.37
UPF1-204ENST00000596842 PTPRZ1P23471 2315 aaPredicted RBP12.73□□□□□ -0.37
UPF1-204ENST00000596842 OOEPA6NGQ2 149 aa12.73□□□□□ -0.37
UPF1-204ENST00000596842 CORO2AQ92828 525 aa12.73□□□□□ -0.37
UPF1-204ENST00000596842 BET1LQ9NYM9 111 aa12.73□□□□□ -0.37
UPF1-204ENST00000596842 HCFC1P51610 2035 aa12.73□□□□□ -0.37
UPF1-204ENST00000596842 TRAV3A0A0B4J244 114 aa12.73□□□□□ -0.37
UPF1-204ENST00000596842 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.73□□□□□ -0.37
UPF1-204ENST00000596842 TDRG1Q3Y452 100 aa12.73□□□□□ -0.37
UPF1-204ENST00000596842 DEFB108BQ8NET1 73 aa12.73□□□□□ -0.37
UPF1-204ENST00000596842 NUDT10Q8NFP7 164 aa12.73□□□□□ -0.37
UPF1-204ENST00000596842 OR2Z1Q8NG97 314 aa12.73□□□□□ -0.37
UPF1-204ENST00000596842 GAL3ST2Q9H3Q3 398 aa12.73□□□□□ -0.37
UPF1-204ENST00000596842 GCM1Q9NP62 436 aa12.73□□□□□ -0.37
UPF1-204ENST00000596842 KLF13Q9Y2Y9 288 aaPredicted RBP12.73□□□□□ -0.37
UPF1-204ENST00000596842 MGAQ8IWI9 3026 aa12.73□□□□□ -0.37
UPF1-204ENST00000596842 SCO2A0A1W2PP80 73 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms