RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 PUSL1Q8N0Z8 303 aaKnown RBP8.1□□□□□ -1.11
LIG3-212ENST00000590181 ADAD2Q8NCV1 583 aaKnown RBP8.1□□□□□ -1.11
LIG3-212ENST00000590181 OR5T1Q8NG75 326 aa8.1□□□□□ -1.11
LIG3-212ENST00000590181 OR5H2Q8NGV7 314 aa8.1□□□□□ -1.11
LIG3-212ENST00000590181 DCUN1D4Q92564 292 aa8.1□□□□□ -1.11
LIG3-212ENST00000590181 C5orf30Q96GV9 206 aa8.1□□□□□ -1.11
LIG3-212ENST00000590181 FAM103A1Q9BTL3 118 aaKnown RBP8.1□□□□□ -1.11
LIG3-212ENST00000590181 SLC5A7Q9GZV3 580 aa8.1□□□□□ -1.11
LIG3-212ENST00000590181 ZNF430Q9H8G1 570 aaPredicted RBP8.1□□□□□ -1.11
LIG3-212ENST00000590181 COMMD9Q9P000 198 aa8.1□□□□□ -1.11
LIG3-212ENST00000590181 PEF1Q9UBV8 284 aaKnown RBP8.1□□□□□ -1.11
LIG3-212ENST00000590181 HUWE1Q7Z6Z7 4374 aaKnown RBP8.1□□□□□ -1.11
LIG3-212ENST00000590181 IGKV1D-13A0A0B4J2D9 117 aa8.09□□□□□ -1.11
LIG3-212ENST00000590181 DPPA5A6NC42 116 aa8.09□□□□□ -1.11
LIG3-212ENST00000590181 H0Y980 276 aa8.09□□□□□ -1.11
LIG3-212ENST00000590181 C3orf84H3BNL1 204 aa8.09□□□□□ -1.11
LIG3-212ENST00000590181 SAA1P0DJI8 122 aaPredicted RBP8.09□□□□□ -1.11
LIG3-212ENST00000590181 IGKV1-13P0DP09 117 aa8.09□□□□□ -1.11
LIG3-212ENST00000590181 ZNF182P17025 639 aaPredicted RBP8.09□□□□□ -1.11
LIG3-212ENST00000590181 ECI1P42126 302 aa8.09□□□□□ -1.11
LIG3-212ENST00000590181 TAS2R20P59543 309 aa8.09□□□□□ -1.11
LIG3-212ENST00000590181 RPL8P62917 257 aaKnown RBP8.09□□□□□ -1.11
LIG3-212ENST00000590181 SSBP2P81877 361 aaPredicted RBP8.09□□□□□ -1.11
LIG3-212ENST00000590181 ATP5G2Q06055 141 aa8.09□□□□□ -1.11
LIG3-212ENST00000590181 PJVKQ0ZLH3 352 aa8.09□□□□□ -1.11
LIG3-212ENST00000590181 KLF5Q13887 457 aaPredicted RBP8.09□□□□□ -1.11
LIG3-212ENST00000590181 TMEM17Q86X19 198 aa8.09□□□□□ -1.11
LIG3-212ENST00000590181 GVQW1Q8N7I0 195 aa8.09□□□□□ -1.11
LIG3-212ENST00000590181 SECTM1Q8WVN6 248 aa8.09□□□□□ -1.11
LIG3-212ENST00000590181 DLX4Q92988 240 aaPredicted RBP8.09□□□□□ -1.11
LIG3-212ENST00000590181 MOB3AQ96BX8 217 aa8.09□□□□□ -1.11
LIG3-212ENST00000590181 MS4A10Q96PG2 267 aa8.09□□□□□ -1.11
LIG3-212ENST00000590181 DUX3Q96PT4 197 aa8.09□□□□□ -1.11
LIG3-212ENST00000590181 ATP6V0BQ99437 205 aa8.09□□□□□ -1.11
LIG3-212ENST00000590181 MRPS26Q9BYN8 205 aaKnown RBP8.09□□□□□ -1.11
LIG3-212ENST00000590181 SLC2A9Q9NRM0 540 aa8.09□□□□□ -1.11
LIG3-212ENST00000590181 COA4Q9NYJ1 87 aa8.09□□□□□ -1.11
LIG3-212ENST00000590181 FKBP11Q9NYL4 201 aa8.09□□□□□ -1.11
LIG3-212ENST00000590181 THYN1Q9P016 225 aa8.09□□□□□ -1.11
LIG3-212ENST00000590181 PEMTQ9UBM1 199 aa8.09□□□□□ -1.11
LIG3-212ENST00000590181 LSM4Q9Y4Z0 139 aaKnown RBP8.09□□□□□ -1.11
LIG3-212ENST00000590181 SAP30O75446 220 aa8.08□□□□□ -1.12
LIG3-212ENST00000590181 GABARAPO95166 117 aa8.08□□□□□ -1.12
LIG3-212ENST00000590181 CRYGCP07315 174 aa8.08□□□□□ -1.12
LIG3-212ENST00000590181 ZNF735P0CB33 412 aa8.08□□□□□ -1.12
LIG3-212ENST00000590181 F2RP25116 425 aa8.08□□□□□ -1.12
LIG3-212ENST00000590181 RCVRNP35243 200 aa8.08□□□□□ -1.12
LIG3-212ENST00000590181 UCP3P55916 312 aa8.08□□□□□ -1.12
LIG3-212ENST00000590181 ERVK-16P61578 105 aa8.08□□□□□ -1.12
LIG3-212ENST00000590181 MRPS10P82664 201 aaKnown RBP8.08□□□□□ -1.12
LIG3-212ENST00000590181 SSBP1Q04837 148 aaKnown RBP8.08□□□□□ -1.12
LIG3-212ENST00000590181 MRGPRG-AS1Q2M3A8 158 aa8.08□□□□□ -1.12
LIG3-212ENST00000590181 ASPHD1Q5U4P2 390 aa8.08□□□□□ -1.12
LIG3-212ENST00000590181 SPAG16Q8N0X2 631 aa8.08□□□□□ -1.12
LIG3-212ENST00000590181 OR1L6Q8NGR2 347 aa8.08□□□□□ -1.12
LIG3-212ENST00000590181 OR2K2Q8NGT1 345 aa8.08□□□□□ -1.12
LIG3-212ENST00000590181 GPX8Q8TED1 209 aa8.08□□□□□ -1.12
LIG3-212ENST00000590181 COMMD5Q9GZQ3 224 aa8.08□□□□□ -1.12
LIG3-212ENST00000590181 TAS2R8Q9NYW2 309 aa8.08□□□□□ -1.12
LIG3-212ENST00000590181 EHFQ9NZC4 300 aa8.08□□□□□ -1.12
LIG3-212ENST00000590181 SMAD5-AS1Q9Y6J3 95 aa8.08□□□□□ -1.12
LIG3-212ENST00000590181 IGHV4OR15-8A0A075B7B6 117 aa8.07□□□□□ -1.12
LIG3-212ENST00000590181 A0A087WW49 117 aa8.07□□□□□ -1.12
LIG3-212ENST00000590181 GPR31O00270 319 aa8.07□□□□□ -1.12
LIG3-212ENST00000590181 B3GALNT1O75752 331 aa8.07□□□□□ -1.12
LIG3-212ENST00000590181 IL6RP08887 468 aaPredicted RBP8.07□□□□□ -1.12
LIG3-212ENST00000590181 HLA-GP17693 338 aa8.07□□□□□ -1.12
LIG3-212ENST00000590181 GNRHRP30968 328 aa8.07□□□□□ -1.12
LIG3-212ENST00000590181 RPL27AP46776 148 aaKnown RBP8.07□□□□□ -1.12
LIG3-212ENST00000590181 VBP1P61758 197 aa8.07□□□□□ -1.12
LIG3-212ENST00000590181 TSPAN5P62079 268 aa8.07□□□□□ -1.12
LIG3-212ENST00000590181 LSM3P62310 102 aaKnown RBP8.07□□□□□ -1.12
LIG3-212ENST00000590181 RPL30P62888 115 aaKnown RBP8.07□□□□□ -1.12
LIG3-212ENST00000590181 CTF1Q16619 201 aa8.07□□□□□ -1.12
LIG3-212ENST00000590181 RPEL1Q2QD12 228 aa8.07□□□□□ -1.12
LIG3-212ENST00000590181 GPR107Q5VW38 600 aa8.07□□□□□ -1.12
LIG3-212ENST00000590181 GPR141Q7Z602 305 aa8.07□□□□□ -1.12
LIG3-212ENST00000590181 ZNF486Q96H40 463 aaPredicted RBP8.07□□□□□ -1.12
LIG3-212ENST00000590181 CXorf58Q96LI9 332 aa8.07□□□□□ -1.12
LIG3-212ENST00000590181 OR5B12Q96R08 314 aa8.07□□□□□ -1.12
LIG3-212ENST00000590181 TSC22D3Q99576 134 aa8.07□□□□□ -1.12
LIG3-212ENST00000590181 ZNF2Q9BSG1 426 aaPredicted RBP8.07□□□□□ -1.12
LIG3-212ENST00000590181 CCL28Q9NRJ3 127 aa8.07□□□□□ -1.12
LIG3-212ENST00000590181 COMMD3Q9UBI1 195 aa8.07□□□□□ -1.12
LIG3-212ENST00000590181 CSMD3Q7Z407 3707 aa8.07□□□□□ -1.12
LIG3-212ENST00000590181 STARD9Q9P2P6 4700 aa8.06□□□□□ -1.12
LIG3-212ENST00000590181 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.06□□□□□ -1.12
LIG3-212ENST00000590181 TRBV7-1A0A0A6YYK4 115 aa8.06□□□□□ -1.12
LIG3-212ENST00000590181 J3QRK9 145 aa8.06□□□□□ -1.12
LIG3-212ENST00000590181 PGLYRP1O75594 196 aaPredicted RBP8.06□□□□□ -1.12
LIG3-212ENST00000590181 ATG12O94817 140 aa8.06□□□□□ -1.12
LIG3-212ENST00000590181 IGHV3-11P01762 117 aa8.06□□□□□ -1.12
LIG3-212ENST00000590181 IFNA6P05013 189 aa8.06□□□□□ -1.12
LIG3-212ENST00000590181 RPA2P15927 270 aa8.06□□□□□ -1.12
LIG3-212ENST00000590181 PTBP1P26599 531 aaKnown RBP eCLIP8.06□□□□□ -1.12
LIG3-212ENST00000590181 RFX2P48378 723 aa8.06□□□□□ -1.12
LIG3-212ENST00000590181 BRWD1-AS2P59051 145 aa8.06□□□□□ -1.12
LIG3-212ENST00000590181 RHOGP84095 191 aa8.06□□□□□ -1.12
LIG3-212ENST00000590181 AADACL3Q5VUY0 350 aa8.06□□□□□ -1.12
LIG3-212ENST00000590181 IDO2Q6ZQW0 420 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms