RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 RPL23P62829 140 aaKnown RBP3.46□□□□□ -1.86
LIG3-211ENST00000588713 HBG1P69891 147 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 HBG2P69892 147 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 RUNX1Q01196 453 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 MEF2BQ02080 365 aaPredicted RBP3.46□□□□□ -1.86
LIG3-211ENST00000588713 ID3Q02535 119 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 ZNF92Q03936 586 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 NSDHLQ15738 373 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 ADIRFQ15847 76 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 C21orf62-AS1Q17RA5 79 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 MS4A18Q3C1V0 323 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 BSXQ3C1V8 233 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 SP6Q3SY56 376 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 PHLDA2Q53GA4 152 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 SLC25A53Q5H9E4 307 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 SAPCD1Q5SSQ6 148 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 COL5A1-AS1Q5SY13 56 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 HLA-DQA1Q5Y7H0 255 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 SLC25A24Q6NUK1 477 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 ASCL4Q6XD76 172 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 ZNF66Q6ZN08 573 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 FAM57BQ71RH2 274 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 RNF144BQ7Z419 303 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 C6orf201Q7Z4U5 140 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 TMEM144Q7Z5S9 345 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 ZNF695Q8IW36 515 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 ODF3L1Q8IXM7 274 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 PRR22Q8IZ63 422 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 OR4B1Q8NGF8 309 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 OR51G1Q8NGK1 321 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 MUC7Q8TAX7 377 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 GMPPAQ96IJ6 420 aaPredicted RBP3.46□□□□□ -1.86
LIG3-211ENST00000588713 MRGPRX4Q96LA9 322 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 ZNF385AQ96PM9 386 aaKnown RBP3.46□□□□□ -1.86
LIG3-211ENST00000588713 RAB40CQ96S21 281 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 TP53RKQ96S44 253 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 CITED1Q99966 193 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 HDHD3Q9BSH5 251 aaPredicted RBP3.46□□□□□ -1.86
LIG3-211ENST00000588713 RTN4RQ9BZR6 473 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 BPESC1Q9GZL8 116 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 MAP1LC3BQ9GZQ8 125 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 LPAR2Q9HBW0 351 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 GPR35Q9HC97 309 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 PLEKHJ1Q9NW61 149 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 OR6C3Q9NZP0 311 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 B3GAT1Q9P2W7 334 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 ZNF391Q9UJN7 358 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.46□□□□□ -1.86
LIG3-211ENST00000588713 U3KQK5 164 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 ALPK2Q86TB3 2170 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 PCNX3Q9H6A9 2034 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 PLXNB1O43157 2135 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 IGLV3-32A0A0A0MS00 114 aa3.45□□□□□ -1.86
LIG3-211ENST00000588713 TRAV39A0A0B4J263 110 aa3.45□□□□□ -1.86
LIG3-211ENST00000588713 CTXND1A0A1B0GTU2 59 aa3.45□□□□□ -1.86
LIG3-211ENST00000588713 A0A1W2PPQ1 181 aa3.45□□□□□ -1.86
LIG3-211ENST00000588713 OR6C6A6NF89 314 aa3.45□□□□□ -1.86
LIG3-211ENST00000588713 DNAJC9-AS1A6NH13 148 aa3.45□□□□□ -1.86
LIG3-211ENST00000588713 LRRC3CA6NJW4 275 aa3.45□□□□□ -1.86
LIG3-211ENST00000588713 CEBPZOSA8MTT3 80 aa3.45□□□□□ -1.86
LIG3-211ENST00000588713 ADAM20O43506 726 aa3.45□□□□□ -1.86
LIG3-211ENST00000588713 SOX15O60248 233 aa3.45□□□□□ -1.86
LIG3-211ENST00000588713 OR2J2O76002 312 aa3.45□□□□□ -1.86
LIG3-211ENST00000588713 OPN1LWP04000 364 aa3.45□□□□□ -1.86
LIG3-211ENST00000588713 P04436 131 aa3.45□□□□□ -1.86
LIG3-211ENST00000588713 NPSP0C0P6 89 aa3.45□□□□□ -1.86
LIG3-211ENST00000588713 CCL3P10147 92 aa3.45□□□□□ -1.86
LIG3-211ENST00000588713 FAHP16930 419 aa3.45□□□□□ -1.86
LIG3-211ENST00000588713 MSR1P21757 451 aa3.45□□□□□ -1.86
LIG3-211ENST00000588713 TUBG1P23258 451 aa3.45□□□□□ -1.86
LIG3-211ENST00000588713 IL3RAP26951 378 aa3.45□□□□□ -1.86
LIG3-211ENST00000588713 S100GP29377 79 aa3.45□□□□□ -1.86
LIG3-211ENST00000588713 BRS3P32247 399 aa3.45□□□□□ -1.86
LIG3-211ENST00000588713 RPL29P47914 159 aaKnown RBP3.45□□□□□ -1.86
LIG3-211ENST00000588713 PSMB3P49720 205 aa3.45□□□□□ -1.86
LIG3-211ENST00000588713 ZNF41P51814 821 aaPredicted RBP3.45□□□□□ -1.86
LIG3-211ENST00000588713 TPPP2P59282 170 aa3.45□□□□□ -1.86
LIG3-211ENST00000588713 RPL15P61313 204 aaKnown RBP3.45□□□□□ -1.86
LIG3-211ENST00000588713 ERVS71-1P61550 626 aa3.45□□□□□ -1.86
LIG3-211ENST00000588713 SELENOTP62341 195 aa3.45□□□□□ -1.86
LIG3-211ENST00000588713 PAFAH1B2P68402 229 aa3.45□□□□□ -1.86
LIG3-211ENST00000588713 MRPS34P82930 218 aaKnown RBP3.45□□□□□ -1.86
LIG3-211ENST00000588713 SRYQ05066 204 aa3.45□□□□□ -1.86
LIG3-211ENST00000588713 C17orf67Q0P5P2 114 aa3.45□□□□□ -1.86
LIG3-211ENST00000588713 ZNF154Q13106 437 aa3.45□□□□□ -1.86
LIG3-211ENST00000588713 ZNF726P1Q15940 193 aa3.45□□□□□ -1.86
LIG3-211ENST00000588713 HIST3H3Q16695 136 aa3.45□□□□□ -1.86
LIG3-211ENST00000588713 C10orf128Q5T292 105 aa3.45□□□□□ -1.86
LIG3-211ENST00000588713 TSPO2Q5TGU0 170 aa3.45□□□□□ -1.86
LIG3-211ENST00000588713 FBXW9Q5XUX1 488 aa3.45□□□□□ -1.86
LIG3-211ENST00000588713 ZFAND6Q6FIF0 208 aa3.45□□□□□ -1.86
LIG3-211ENST00000588713 P4HA3Q7Z4N8 544 aa3.45□□□□□ -1.86
LIG3-211ENST00000588713 TBC1D26Q86UD7 250 aa3.45□□□□□ -1.86
LIG3-211ENST00000588713 DTX2Q86UW9 622 aa3.45□□□□□ -1.86
LIG3-211ENST00000588713 WDFY1Q8IWB7 410 aa3.45□□□□□ -1.86
LIG3-211ENST00000588713 SELENOHQ8IZQ5 122 aaKnown RBP3.45□□□□□ -1.86
LIG3-211ENST00000588713 SIGLECL1Q8N7X8 197 aa3.45□□□□□ -1.86
LIG3-211ENST00000588713 ZNF321PQ8N8H1 164 aa3.45□□□□□ -1.86
LIG3-211ENST00000588713 OR5D18Q8NGL1 313 aa3.45□□□□□ -1.86
LIG3-211ENST00000588713 OR11L1Q8NGX0 322 aa3.45□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms