RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 FSHBP01225 129 aa4.26□□□□□ -1.73
LIG3-210ENST00000588109 IFNA21P01568 189 aa4.26□□□□□ -1.73
LIG3-210ENST00000588109 IGKV1D-33P01593 117 aa4.26□□□□□ -1.73
LIG3-210ENST00000588109 IGKV1-33P01594 117 aa4.26□□□□□ -1.73
LIG3-210ENST00000588109 FAM106CPP0CH98 169 aa4.26□□□□□ -1.73
LIG3-210ENST00000588109 RPA2P15927 270 aa4.26□□□□□ -1.73
LIG3-210ENST00000588109 TMEM11P17152 192 aa4.26□□□□□ -1.73
LIG3-210ENST00000588109 CD24P25063 80 aa4.26□□□□□ -1.73
LIG3-210ENST00000588109 UCP1P25874 307 aa4.26□□□□□ -1.73
LIG3-210ENST00000588109 CD1BP29016 333 aa4.26□□□□□ -1.73
LIG3-210ENST00000588109 AKR1C2P52895 323 aa4.26□□□□□ -1.73
LIG3-210ENST00000588109 RPS16P62249 146 aaKnown RBP4.26□□□□□ -1.73
LIG3-210ENST00000588109 SUPT4H1P63272 117 aaKnown RBP4.26□□□□□ -1.73
LIG3-210ENST00000588109 SCGB2A2Q13296 93 aa4.26□□□□□ -1.73
LIG3-210ENST00000588109 PMS2P11Q13670 270 aa4.26□□□□□ -1.73
LIG3-210ENST00000588109 TMEM187Q14656 261 aa4.26□□□□□ -1.73
LIG3-210ENST00000588109 DEFB112Q30KQ8 113 aa4.26□□□□□ -1.73
LIG3-210ENST00000588109 ANKRD55Q3KP44 614 aa4.26□□□□□ -1.73
LIG3-210ENST00000588109 DHRS7BQ6IAN0 325 aaPredicted RBP4.26□□□□□ -1.73
LIG3-210ENST00000588109 RBMS3Q6XE24 437 aaKnown RBP4.26□□□□□ -1.73
LIG3-210ENST00000588109 Q6ZNX1 250 aa4.26□□□□□ -1.73
LIG3-210ENST00000588109 Q6ZRM9 215 aa4.26□□□□□ -1.73
LIG3-210ENST00000588109 Q71RC1 249 aaPredicted RBP4.26□□□□□ -1.73
LIG3-210ENST00000588109 DYNAPQ8N1N2 210 aa4.26□□□□□ -1.73
LIG3-210ENST00000588109 DMBX1Q8NFW5 382 aa4.26□□□□□ -1.73
LIG3-210ENST00000588109 OR4C13Q8NGP0 309 aa4.26□□□□□ -1.73
LIG3-210ENST00000588109 OR2T10Q8NGZ9 312 aa4.26□□□□□ -1.73
LIG3-210ENST00000588109 GLYATL2Q8WU03 294 aa4.26□□□□□ -1.73
LIG3-210ENST00000588109 MITD1Q8WV92 249 aa4.26□□□□□ -1.73
LIG3-210ENST00000588109 DDB2Q92466 427 aa4.26□□□□□ -1.73
LIG3-210ENST00000588109 R3HDM4Q96D70 268 aa4.26□□□□□ -1.73
LIG3-210ENST00000588109 RRNAD1Q96FB5 475 aaKnown RBP4.26□□□□□ -1.73
LIG3-210ENST00000588109 GALNT14Q96FL9 552 aa4.26□□□□□ -1.73
LIG3-210ENST00000588109 HARBI1Q96MB7 349 aa4.26□□□□□ -1.73
LIG3-210ENST00000588109 SSX3Q99909 188 aa4.26□□□□□ -1.73
LIG3-210ENST00000588109 AIFM2Q9BRQ8 373 aa4.26□□□□□ -1.73
LIG3-210ENST00000588109 KRTAP4-7Q9BYR0 210 aa4.26□□□□□ -1.73
LIG3-210ENST00000588109 MED28Q9H204 178 aa4.26□□□□□ -1.73
LIG3-210ENST00000588109 SOX21Q9Y651 276 aaPredicted RBP4.26□□□□□ -1.73
LIG3-210ENST00000588109 FLNAP21333 2647 aaKnown RBP4.26□□□□□ -1.73
LIG3-210ENST00000588109 MAP1AP78559 2803 aaPredicted RBP4.26□□□□□ -1.73
LIG3-210ENST00000588109 ABCA1O95477 2261 aa4.25□□□□□ -1.73
LIG3-210ENST00000588109 A0A0B4J2A0 478 aa4.25□□□□□ -1.73
LIG3-210ENST00000588109 C13orf42A0A1B0GVH6 325 aa4.25□□□□□ -1.73
LIG3-210ENST00000588109 KRTAP23-1A1A580 65 aa4.25□□□□□ -1.73
LIG3-210ENST00000588109 NCBP2LA6PVI3 153 aaKnown RBP4.25□□□□□ -1.73
LIG3-210ENST00000588109 FAM25EA8MYX2 175 aa4.25□□□□□ -1.73
LIG3-210ENST00000588109 H3BUX3 64 aa4.25□□□□□ -1.73
LIG3-210ENST00000588109 GOSR2O14653 212 aa4.25□□□□□ -1.73
LIG3-210ENST00000588109 RBMXL2O75526 392 aaKnown RBP4.25□□□□□ -1.73
LIG3-210ENST00000588109 VENTXO95231 258 aa4.25□□□□□ -1.73
LIG3-210ENST00000588109 CDS2O95674 445 aa4.25□□□□□ -1.73
LIG3-210ENST00000588109 MOSP00540 346 aa4.25□□□□□ -1.73
LIG3-210ENST00000588109 KRASP01116 189 aa4.25□□□□□ -1.73
LIG3-210ENST00000588109 IGKV1-16P04430 117 aa4.25□□□□□ -1.73
LIG3-210ENST00000588109 SNRNP70P08621 437 aaKnown RBP4.25□□□□□ -1.73
LIG3-210ENST00000588109 HOXB5P09067 269 aa4.25□□□□□ -1.73
LIG3-210ENST00000588109 NQO2P16083 231 aa4.25□□□□□ -1.73
LIG3-210ENST00000588109 SRD5A1P18405 259 aa4.25□□□□□ -1.73
LIG3-210ENST00000588109 G6PCP35575 357 aa4.25□□□□□ -1.73
LIG3-210ENST00000588109 HNF4GQ14541 408 aa4.25□□□□□ -1.73
LIG3-210ENST00000588109 PLGLAQ15195 96 aa4.25□□□□□ -1.73
LIG3-210ENST00000588109 MMDQ15546 238 aa4.25□□□□□ -1.73
LIG3-210ENST00000588109 LY6EQ16553 131 aa4.25□□□□□ -1.73
LIG3-210ENST00000588109 LRRC75BQ2VPJ9 315 aa4.25□□□□□ -1.73
LIG3-210ENST00000588109 VMA21Q3ZAQ7 101 aa4.25□□□□□ -1.73
LIG3-210ENST00000588109 ZNF585BQ52M93 769 aa4.25□□□□□ -1.73
LIG3-210ENST00000588109 THOC7Q6I9Y2 204 aaKnown RBP4.25□□□□□ -1.73
LIG3-210ENST00000588109 C9orf139Q6ZV77 190 aa4.25□□□□□ -1.73
LIG3-210ENST00000588109 SSX9Q7RTT3 188 aa4.25□□□□□ -1.73
LIG3-210ENST00000588109 H2BFWTQ7Z2G1 175 aa4.25□□□□□ -1.73
LIG3-210ENST00000588109 LYZL2Q7Z4W2 148 aa4.25□□□□□ -1.73
LIG3-210ENST00000588109 SELENOHQ8IZQ5 122 aaKnown RBP4.25□□□□□ -1.73
LIG3-210ENST00000588109 VKORC1L1Q8N0U8 176 aa4.25□□□□□ -1.73
LIG3-210ENST00000588109 SLC35G3Q8N808 338 aa4.25□□□□□ -1.73
LIG3-210ENST00000588109 IL17DQ8TAD2 202 aa4.25□□□□□ -1.73
LIG3-210ENST00000588109 LHFPL5Q8TAF8 219 aa4.25□□□□□ -1.73
LIG3-210ENST00000588109 OSR1Q8TAX0 266 aaPredicted RBP4.25□□□□□ -1.73
LIG3-210ENST00000588109 RBPMSQ93062 196 aaKnown RBP4.25□□□□□ -1.73
LIG3-210ENST00000588109 IL22RA2Q969J5 263 aa4.25□□□□□ -1.73
LIG3-210ENST00000588109 RBMXL1Q96E39 390 aaKnown RBP4.25□□□□□ -1.73
LIG3-210ENST00000588109 TMEM56Q96MV1 263 aa4.25□□□□□ -1.73
LIG3-210ENST00000588109 TSNAXQ99598 290 aaKnown RBP4.25□□□□□ -1.73
LIG3-210ENST00000588109 PDCD10Q9BUL8 212 aa4.25□□□□□ -1.73
LIG3-210ENST00000588109 PLEKHA2Q9HB19 425 aa4.25□□□□□ -1.73
LIG3-210ENST00000588109 TNFRSF19Q9NS68 423 aa4.25□□□□□ -1.73
LIG3-210ENST00000588109 FAM212BQ9NTI7 297 aaPredicted RBP4.25□□□□□ -1.73
LIG3-210ENST00000588109 TMEM160Q9NX00 188 aa4.25□□□□□ -1.73
LIG3-210ENST00000588109 COMMD9Q9P000 198 aa4.25□□□□□ -1.73
LIG3-210ENST00000588109 KIAA1456Q9P272 454 aa4.25□□□□□ -1.73
LIG3-210ENST00000588109 MGAT4CQ9UBM8 478 aa4.25□□□□□ -1.73
LIG3-210ENST00000588109 SHPKQ9UHJ6 478 aa4.25□□□□□ -1.73
LIG3-210ENST00000588109 TMEM56-RWDD3S4R434 201 aa4.25□□□□□ -1.73
LIG3-210ENST00000588109 ZNF469Q96JG9 3925 aaPredicted RBP4.25□□□□□ -1.73
LIG3-210ENST00000588109 A0A1B0GVG6 124 aa4.24□□□□□ -1.73
LIG3-210ENST00000588109 DUXBA0A1W2PPF3 345 aa4.24□□□□□ -1.73
LIG3-210ENST00000588109 C5orf51A6NDU8 294 aa4.24□□□□□ -1.73
LIG3-210ENST00000588109 MARCH11A6NNE9 402 aa4.24□□□□□ -1.73
LIG3-210ENST00000588109 VGLL3A8MV65 326 aa4.24□□□□□ -1.73
LIG3-210ENST00000588109 B5MCH6 92 aa4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms