RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 SLC7A5P1Q8MH63 180 aa8.51□□□□□ -1.05
SS18-217ENST00000580958 OR11H6Q8NGC7 330 aa8.51□□□□□ -1.05
SS18-217ENST00000580958 OSR1Q8TAX0 266 aaPredicted RBP8.51□□□□□ -1.05
SS18-217ENST00000580958 LHX4Q969G2 390 aa8.51□□□□□ -1.05
SS18-217ENST00000580958 HARBI1Q96MB7 349 aa8.51□□□□□ -1.05
SS18-217ENST00000580958 GSX2Q9BZM3 304 aa8.51□□□□□ -1.05
SS18-217ENST00000580958 LPAR2Q9HBW0 351 aa8.51□□□□□ -1.05
SS18-217ENST00000580958 PTPN13Q12923 2485 aa8.51□□□□□ -1.05
SS18-217ENST00000580958 TACC2O95359 2948 aa8.5□□□□□ -1.05
SS18-217ENST00000580958 CENPEQ02224 2701 aa8.5□□□□□ -1.05
SS18-217ENST00000580958 IGHV1-3A0A0C4DH29 117 aa8.5□□□□□ -1.05
SS18-217ENST00000580958 RPS10-NUDT3A0A1W2PQS6 291 aa8.5□□□□□ -1.05
SS18-217ENST00000580958 C15orf61A6NNL5 157 aa8.5□□□□□ -1.05
SS18-217ENST00000580958 ODF3BA8MYP8 253 aa8.5□□□□□ -1.05
SS18-217ENST00000580958 LEUTXA8MZ59 168 aa8.5□□□□□ -1.05
SS18-217ENST00000580958 LY6LH3BQJ8 138 aa8.5□□□□□ -1.05
SS18-217ENST00000580958 UPK2O00526 184 aa8.5□□□□□ -1.05
SS18-217ENST00000580958 ATP6V1G1O75348 118 aa8.5□□□□□ -1.05
SS18-217ENST00000580958 IFNA17P01571 189 aa8.5□□□□□ -1.05
SS18-217ENST00000580958 SAA1P0DJI8 122 aaPredicted RBP8.5□□□□□ -1.05
SS18-217ENST00000580958 MYOD1P15172 320 aa8.5□□□□□ -1.05
SS18-217ENST00000580958 CR1P17927 2039 aa8.5□□□□□ -1.05
SS18-217ENST00000580958 HTR1DP28221 377 aa8.5□□□□□ -1.05
SS18-217ENST00000580958 RAB13P51153 203 aa8.5□□□□□ -1.05
SS18-217ENST00000580958 DVL1P1P54792 670 aaPredicted RBP8.5□□□□□ -1.05
SS18-217ENST00000580958 DSCR9P59020 149 aa8.5□□□□□ -1.05
SS18-217ENST00000580958 TAS2R30P59541 319 aa8.5□□□□□ -1.05
SS18-217ENST00000580958 RPS16P62249 146 aaKnown RBP8.5□□□□□ -1.05
SS18-217ENST00000580958 NDUFA5Q16718 116 aa8.5□□□□□ -1.05
SS18-217ENST00000580958 AARDQ4LEZ3 155 aa8.5□□□□□ -1.05
SS18-217ENST00000580958 LDLRAD2Q5SZI1 272 aa8.5□□□□□ -1.05
SS18-217ENST00000580958 STX12Q86Y82 276 aa8.5□□□□□ -1.05
SS18-217ENST00000580958 BAP18Q8IXM2 172 aa8.5□□□□□ -1.05
SS18-217ENST00000580958 DTD1Q8TEA8 209 aa8.5□□□□□ -1.05
SS18-217ENST00000580958 RPEQ96AT9 228 aa8.5□□□□□ -1.05
SS18-217ENST00000580958 FLYWCH2Q96CP2 140 aaKnown RBP8.5□□□□□ -1.05
SS18-217ENST00000580958 TBX15Q96SF7 602 aa8.5□□□□□ -1.05
SS18-217ENST00000580958 NUP50Q9UKX7 468 aa8.5□□□□□ -1.05
SS18-217ENST00000580958 WSB1Q9Y6I7 421 aa8.5□□□□□ -1.05
SS18-217ENST00000580958 VPS13CQ709C8 3753 aa8.49□□□□□ -1.05
SS18-217ENST00000580958 POLQO75417 2590 aa8.49□□□□□ -1.05
SS18-217ENST00000580958 BORCS7-ASMTA0A0B4J1R7 106 aa8.49□□□□□ -1.05
SS18-217ENST00000580958 RNASEK-C17orf49H0YIS7 233 aa8.49□□□□□ -1.05
SS18-217ENST00000580958 TOX4O94842 621 aa8.49□□□□□ -1.05
SS18-217ENST00000580958 IL6RP08887 468 aaPredicted RBP8.49□□□□□ -1.05
SS18-217ENST00000580958 METTL15P1P0C7V9 234 aa8.49□□□□□ -1.05
SS18-217ENST00000580958 MC5RP33032 325 aa8.49□□□□□ -1.05
SS18-217ENST00000580958 SULT1A1P50225 295 aa8.49□□□□□ -1.05
SS18-217ENST00000580958 SPCS3P61009 180 aa8.49□□□□□ -1.05
SS18-217ENST00000580958 RAB14P61106 215 aa8.49□□□□□ -1.05
SS18-217ENST00000580958 EIF5AP63241 154 aaKnown RBP8.49□□□□□ -1.05
SS18-217ENST00000580958 BAXQ07812 192 aa8.49□□□□□ -1.05
SS18-217ENST00000580958 CLINT1Q14677 625 aa8.49□□□□□ -1.05
SS18-217ENST00000580958 CLEC12BQ2HXU8 276 aa8.49□□□□□ -1.05
SS18-217ENST00000580958 CLLU1Q5K131 121 aa8.49□□□□□ -1.05
SS18-217ENST00000580958 SPANXN5Q5MJ07 72 aa8.49□□□□□ -1.05
SS18-217ENST00000580958 FAM74A1Q5RGS3 127 aa8.49□□□□□ -1.05
SS18-217ENST00000580958 HAPLN4Q86UW8 402 aa8.49□□□□□ -1.05
SS18-217ENST00000580958 ZNF429Q86V71 674 aa8.49□□□□□ -1.05
SS18-217ENST00000580958 PUSL1Q8N0Z8 303 aaKnown RBP8.49□□□□□ -1.05
SS18-217ENST00000580958 TMEM217Q8N7C4 229 aa8.49□□□□□ -1.05
SS18-217ENST00000580958 OR4C13Q8NGP0 309 aa8.49□□□□□ -1.05
SS18-217ENST00000580958 OR1S2Q8NGQ3 325 aa8.49□□□□□ -1.05
SS18-217ENST00000580958 OR5C1Q8NGR4 320 aa8.49□□□□□ -1.05
SS18-217ENST00000580958 OR52E5Q8NH55 327 aa8.49□□□□□ -1.05
SS18-217ENST00000580958 OR4C12Q96R67 309 aa8.49□□□□□ -1.05
SS18-217ENST00000580958 AIFM2Q9BRQ8 373 aa8.49□□□□□ -1.05
SS18-217ENST00000580958 MS4A7Q9GZW8 240 aaPredicted RBP8.49□□□□□ -1.05
SS18-217ENST00000580958 UNKLQ9H9P5 680 aaKnown RBP8.49□□□□□ -1.05
SS18-217ENST00000580958 BET1LQ9NYM9 111 aa8.49□□□□□ -1.05
SS18-217ENST00000580958 DPM3Q9P2X0 92 aa8.49□□□□□ -1.05
SS18-217ENST00000580958 TCF19Q9Y242 345 aa8.49□□□□□ -1.05
SS18-217ENST00000580958 FOXA2Q9Y261 457 aaPredicted RBP8.49□□□□□ -1.05
SS18-217ENST00000580958 POLR3KQ9Y2Y1 108 aaPredicted RBP8.49□□□□□ -1.05
SS18-217ENST00000580958 OR51B2Q9Y5P1 312 aa8.49□□□□□ -1.05
SS18-217ENST00000580958 INSIG2Q9Y5U4 225 aa8.49□□□□□ -1.05
SS18-217ENST00000580958 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.49□□□□□ -1.05
SS18-217ENST00000580958 ABCA12Q86UK0 2595 aa8.49□□□□□ -1.05
SS18-217ENST00000580958 NAV3Q8IVL0 2385 aa8.48□□□□□ -1.05
SS18-217ENST00000580958 A0A1W2PPI3 338 aa8.48□□□□□ -1.05
SS18-217ENST00000580958 JTBO76095 146 aa8.48□□□□□ -1.05
SS18-217ENST00000580958 KBTBD11O94819 623 aa8.48□□□□□ -1.05
SS18-217ENST00000580958 IGLV2-23P01705 113 aa8.48□□□□□ -1.05
SS18-217ENST00000580958 CEACAM3P40198 252 aa8.48□□□□□ -1.05
SS18-217ENST00000580958 HSPE1P61604 102 aaKnown RBP8.48□□□□□ -1.05
SS18-217ENST00000580958 ARL16Q0P5N6 197 aa8.48□□□□□ -1.05
SS18-217ENST00000580958 HIST2H2BCQ6DN03 193 aa8.48□□□□□ -1.05
SS18-217ENST00000580958 TMEM14EPQ6UXP3 125 aa8.48□□□□□ -1.05
SS18-217ENST00000580958 LHFPL4Q7Z7J7 247 aa8.48□□□□□ -1.05
SS18-217ENST00000580958 PHYHIPLQ96FC7 376 aa8.48□□□□□ -1.05
SS18-217ENST00000580958 RITA1Q96K30 269 aa8.48□□□□□ -1.05
SS18-217ENST00000580958 CIB3Q96Q77 187 aaPredicted RBP8.48□□□□□ -1.05
SS18-217ENST00000580958 CLCC1Q96S66 551 aa8.48□□□□□ -1.05
SS18-217ENST00000580958 ARV1Q9H2C2 271 aa8.48□□□□□ -1.05
SS18-217ENST00000580958 TMEM14BQ9NUH8 114 aa8.48□□□□□ -1.05
SS18-217ENST00000580958 PRNDQ9UKY0 176 aa8.48□□□□□ -1.05
SS18-217ENST00000580958 STRAPQ9Y3F4 350 aaKnown RBP8.48□□□□□ -1.05
SS18-217ENST00000580958 HILPDAQ9Y5L2 63 aa8.48□□□□□ -1.05
SS18-217ENST00000580958 HELZ2Q9BYK8 2649 aaKnown RBP8.47□□□□□ -1.05
SS18-217ENST00000580958 TIMM23O14925 209 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms