RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 KBTBD11O94819 623 aa8.59□□□□□ -1.03
SS18-213ENST00000579640 OR2F2O95006 317 aa8.59□□□□□ -1.03
SS18-213ENST00000579640 SRD5A1P18405 259 aa8.59□□□□□ -1.03
SS18-213ENST00000579640 CXCL3P19876 107 aa8.59□□□□□ -1.03
SS18-213ENST00000579640 SRSF4Q08170 494 aaKnown RBP8.59□□□□□ -1.03
SS18-213ENST00000579640 HNF4GQ14541 408 aa8.59□□□□□ -1.03
SS18-213ENST00000579640 FOXRED2Q8IWF2 684 aa8.59□□□□□ -1.03
SS18-213ENST00000579640 TMEM86BQ8N661 226 aa8.59□□□□□ -1.03
SS18-213ENST00000579640 OR4A16Q8NH70 328 aa8.59□□□□□ -1.03
SS18-213ENST00000579640 ZNF48Q96MX3 618 aaPredicted RBP8.59□□□□□ -1.03
SS18-213ENST00000579640 RBM14Q96PK6 669 aaKnown RBP8.59□□□□□ -1.03
SS18-213ENST00000579640 PDCD10Q9BUL8 212 aa8.59□□□□□ -1.03
SS18-213ENST00000579640 NMES1Q9C002 83 aa8.59□□□□□ -1.03
SS18-213ENST00000579640 ZNF436Q9C0F3 470 aaPredicted RBP8.59□□□□□ -1.03
SS18-213ENST00000579640 RANBP3Q9H6Z4 567 aaPredicted RBP8.59□□□□□ -1.03
SS18-213ENST00000579640 CACNG5Q9UF02 275 aa8.59□□□□□ -1.03
SS18-213ENST00000579640 A6NDX4 124 aa8.58□□□□□ -1.04
SS18-213ENST00000579640 SLC25A17O43808 307 aa8.58□□□□□ -1.04
SS18-213ENST00000579640 CRYGBP07316 175 aa8.58□□□□□ -1.04
SS18-213ENST00000579640 GIPP09681 153 aaPredicted RBP8.58□□□□□ -1.04
SS18-213ENST00000579640 OR9G9P0C7N8 305 aa8.58□□□□□ -1.04
SS18-213ENST00000579640 H2BFSP57053 126 aa8.58□□□□□ -1.04
SS18-213ENST00000579640 RBMS3Q6XE24 437 aaKnown RBP8.58□□□□□ -1.04
SS18-213ENST00000579640 MMD2Q8IY49 270 aa8.58□□□□□ -1.04
SS18-213ENST00000579640 ZBTB8BQ8NAP8 495 aaPredicted RBP8.58□□□□□ -1.04
SS18-213ENST00000579640 OR10C1Q96KK4 312 aa8.58□□□□□ -1.04
SS18-213ENST00000579640 GSX1Q9H4S2 264 aaPredicted RBP8.58□□□□□ -1.04
SS18-213ENST00000579640 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.58□□□□□ -1.04
SS18-213ENST00000579640 FKBP11Q9NYL4 201 aa8.58□□□□□ -1.04
SS18-213ENST00000579640 METTL1Q9UBP6 276 aaKnown RBP8.58□□□□□ -1.04
SS18-213ENST00000579640 PRNDQ9UKY0 176 aa8.58□□□□□ -1.04
SS18-213ENST00000579640 SIGLEC9Q9Y336 463 aa8.58□□□□□ -1.04
SS18-213ENST00000579640 MOB4Q9Y3A3 225 aa8.58□□□□□ -1.04
SS18-213ENST00000579640 POMT1Q9Y6A1 747 aa8.58□□□□□ -1.04
SS18-213ENST00000579640 HIVEP2P31629 2446 aa8.57□□□□□ -1.04
SS18-213ENST00000579640 NCBP2LA6PVI3 153 aaKnown RBP8.57□□□□□ -1.04
SS18-213ENST00000579640 MPTX1A8MV57 137 aa8.57□□□□□ -1.04
SS18-213ENST00000579640 M0QZK8 103 aa8.57□□□□□ -1.04
SS18-213ENST00000579640 FGF16O43320 207 aa8.57□□□□□ -1.04
SS18-213ENST00000579640 PITX3O75364 302 aa8.57□□□□□ -1.04
SS18-213ENST00000579640 SIX6O95475 246 aa8.57□□□□□ -1.04
SS18-213ENST00000579640 CNTFRP26992 372 aa8.57□□□□□ -1.04
SS18-213ENST00000579640 MAS1LP35410 378 aa8.57□□□□□ -1.04
SS18-213ENST00000579640 F2RL1P55085 397 aa8.57□□□□□ -1.04
SS18-213ENST00000579640 RELBQ01201 579 aa8.57□□□□□ -1.04
SS18-213ENST00000579640 PLGLAQ15195 96 aa8.57□□□□□ -1.04
SS18-213ENST00000579640 C5orf64Q2M2E5 130 aa8.57□□□□□ -1.04
SS18-213ENST00000579640 AARDQ4LEZ3 155 aa8.57□□□□□ -1.04
SS18-213ENST00000579640 Q6ZRM9 215 aa8.57□□□□□ -1.04
SS18-213ENST00000579640 ZNF429Q86V71 674 aa8.57□□□□□ -1.04
SS18-213ENST00000579640 PPP1R27Q86WC6 154 aa8.57□□□□□ -1.04
SS18-213ENST00000579640 SIGLECL1Q8N7X8 197 aa8.57□□□□□ -1.04
SS18-213ENST00000579640 OR1S1Q8NH92 325 aa8.57□□□□□ -1.04
SS18-213ENST00000579640 RBMXL1Q96E39 390 aaKnown RBP8.57□□□□□ -1.04
SS18-213ENST00000579640 SLC25A33Q9BSK2 321 aa8.57□□□□□ -1.04
SS18-213ENST00000579640 PLSCR3Q9NRY6 295 aa8.57□□□□□ -1.04
SS18-213ENST00000579640 ZFP57Q9NU63 452 aa8.57□□□□□ -1.04
SS18-213ENST00000579640 FOXA2Q9Y261 457 aaPredicted RBP8.57□□□□□ -1.04
SS18-213ENST00000579640 C15orf61A6NNL5 157 aa8.57□□□□□ -1.04
SS18-213ENST00000579640 FAM90A26D6RGX4 464 aa8.57□□□□□ -1.04
SS18-213ENST00000579640 RBMXL2O75526 392 aaKnown RBP8.57□□□□□ -1.04
SS18-213ENST00000579640 IGHV4-59P01825 116 aa8.57□□□□□ -1.04
SS18-213ENST00000579640 RAP2BP61225 183 aa8.57□□□□□ -1.04
SS18-213ENST00000579640 RPL8P62917 257 aaKnown RBP8.57□□□□□ -1.04
SS18-213ENST00000579640 PRSS8Q16651 343 aa8.57□□□□□ -1.04
SS18-213ENST00000579640 IZUMO4Q1ZYL8 232 aa8.57□□□□□ -1.04
SS18-213ENST00000579640 FBLN7Q53RD9 439 aa8.57□□□□□ -1.04
SS18-213ENST00000579640 AKAP14Q86UN6 197 aa8.57□□□□□ -1.04
SS18-213ENST00000579640 FAM71E2Q8N5Q1 922 aa8.57□□□□□ -1.04
SS18-213ENST00000579640 OR4D5Q8NGN0 318 aa8.57□□□□□ -1.04
SS18-213ENST00000579640 OR52E5Q8NH55 327 aa8.57□□□□□ -1.04
SS18-213ENST00000579640 FBXL15Q9H469 300 aa8.57□□□□□ -1.04
SS18-213ENST00000579640 GSKIPQ9P0R6 139 aa8.57□□□□□ -1.04
SS18-213ENST00000579640 VPREB3Q9UKI3 123 aa8.57□□□□□ -1.04
SS18-213ENST00000579640 HIVEP1P15822 2718 aa8.56□□□□□ -1.04
SS18-213ENST00000579640 TRAV3A0A0B4J244 114 aa8.56□□□□□ -1.04
SS18-213ENST00000579640 INAFM1C9JVW0 142 aa8.56□□□□□ -1.04
SS18-213ENST00000579640 CCNKO75909 580 aa8.56□□□□□ -1.04
SS18-213ENST00000579640 CD83Q01151 205 aa8.56□□□□□ -1.04
SS18-213ENST00000579640 IL15RAQ13261 267 aa8.56□□□□□ -1.04
SS18-213ENST00000579640 LY6EQ16553 131 aa8.56□□□□□ -1.04
SS18-213ENST00000579640 Q8N9W7 124 aa8.56□□□□□ -1.04
SS18-213ENST00000579640 OR5B3Q8NH48 314 aa8.56□□□□□ -1.04
SS18-213ENST00000579640 FYTTD1Q96QD9 318 aaKnown RBP8.56□□□□□ -1.04
SS18-213ENST00000579640 RASL11BQ9BPW5 248 aa8.56□□□□□ -1.04
SS18-213ENST00000579640 CHIAQ9BZP6 476 aa8.56□□□□□ -1.04
SS18-213ENST00000579640 ZNF430Q9H8G1 570 aaPredicted RBP8.56□□□□□ -1.04
SS18-213ENST00000579640 TMEM14BQ9NUH8 114 aa8.56□□□□□ -1.04
SS18-213ENST00000579640 ZNF257Q9Y2Q1 563 aa8.56□□□□□ -1.04
SS18-213ENST00000579640 HOXA3O43365 443 aaPredicted RBP8.55□□□□□ -1.04
SS18-213ENST00000579640 MED6O75586 246 aa8.55□□□□□ -1.04
SS18-213ENST00000579640 ACTL6BO94805 426 aa8.55□□□□□ -1.04
SS18-213ENST00000579640 NKX2-1P43699 371 aaPredicted RBP8.55□□□□□ -1.04
SS18-213ENST00000579640 OR2B8PP59922 312 aa8.55□□□□□ -1.04
SS18-213ENST00000579640 FGL1Q08830 312 aa8.55□□□□□ -1.04
SS18-213ENST00000579640 PDLIM3Q53GG5 364 aaPredicted RBP8.55□□□□□ -1.04
SS18-213ENST00000579640 Q71RC1 249 aaPredicted RBP8.55□□□□□ -1.04
SS18-213ENST00000579640 TMEM219Q86XT9 240 aa8.55□□□□□ -1.04
SS18-213ENST00000579640 ZNF418Q8TF45 676 aaPredicted RBP8.55□□□□□ -1.04
SS18-213ENST00000579640 COMMD5Q9GZQ3 224 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms