RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 ZNF439Q8NDP4 499 aa8.24□□□□□ -1.09
SS18-210ENST00000578700 ZNF680Q8NEM1 530 aa8.24□□□□□ -1.09
SS18-210ENST00000578700 GPR146Q96CH1 333 aa8.24□□□□□ -1.09
SS18-210ENST00000578700 CLCC1Q96S66 551 aa8.24□□□□□ -1.09
SS18-210ENST00000578700 SSBP3Q9BWW4 388 aaPredicted RBP8.24□□□□□ -1.09
SS18-210ENST00000578700 TMEM133Q9H2Q1 129 aa8.24□□□□□ -1.09
SS18-210ENST00000578700 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.24□□□□□ -1.09
SS18-210ENST00000578700 COA4Q9NYJ1 87 aa8.24□□□□□ -1.09
SS18-210ENST00000578700 OR5AC2Q9NZP5 309 aa8.24□□□□□ -1.09
SS18-210ENST00000578700 ONECUT1Q9UBC0 465 aa8.24□□□□□ -1.09
SS18-210ENST00000578700 CACNG5Q9UF02 275 aa8.24□□□□□ -1.09
SS18-210ENST00000578700 RCL1Q9Y2P8 373 aaKnown RBP8.24□□□□□ -1.09
SS18-210ENST00000578700 AMMECR1Q9Y4X0 333 aaPredicted RBP8.24□□□□□ -1.09
SS18-210ENST00000578700 BORCS7-ASMTA0A0B4J1R7 106 aa8.23□□□□□ -1.09
SS18-210ENST00000578700 A0A1W2PPE3 182 aa8.23□□□□□ -1.09
SS18-210ENST00000578700 RNF222A6NCQ9 220 aa8.23□□□□□ -1.09
SS18-210ENST00000578700 MARCH11A6NNE9 402 aa8.23□□□□□ -1.09
SS18-210ENST00000578700 FAM90A9PA6NNJ1 464 aa8.23□□□□□ -1.09
SS18-210ENST00000578700 LINC00473A8K010 186 aa8.23□□□□□ -1.09
SS18-210ENST00000578700 H0YIZ8 118 aa8.23□□□□□ -1.09
SS18-210ENST00000578700 CLDN34H7C241 214 aa8.23□□□□□ -1.09
SS18-210ENST00000578700 M0QZ24 198 aa8.23□□□□□ -1.09
SS18-210ENST00000578700 SLC31A2O15432 143 aa8.23□□□□□ -1.09
SS18-210ENST00000578700 RAMP3O60896 148 aa8.23□□□□□ -1.09
SS18-210ENST00000578700 S1PR2O95136 353 aa8.23□□□□□ -1.09
SS18-210ENST00000578700 SPDEFO95238 335 aa8.23□□□□□ -1.09
SS18-210ENST00000578700 LY86O95711 162 aa8.23□□□□□ -1.09
SS18-210ENST00000578700 HRASP01112 189 aa8.23□□□□□ -1.09
SS18-210ENST00000578700 IGHV1-8P0DP01 117 aa8.23□□□□□ -1.09
SS18-210ENST00000578700 NQO2P16083 231 aa8.23□□□□□ -1.09
SS18-210ENST00000578700 ERVFRD-1P60508 538 aa8.23□□□□□ -1.09
SS18-210ENST00000578700 EIF4EBP1Q13541 118 aaPredicted RBP8.23□□□□□ -1.09
SS18-210ENST00000578700 DEFB112Q30KQ8 113 aa8.23□□□□□ -1.09
SS18-210ENST00000578700 DHRS7BQ6IAN0 325 aaPredicted RBP8.23□□□□□ -1.09
SS18-210ENST00000578700 FAM71F2Q6NXP2 309 aa8.23□□□□□ -1.09
SS18-210ENST00000578700 ZNF841Q6ZN19 808 aa8.23□□□□□ -1.09
SS18-210ENST00000578700 OR8H3Q8N146 312 aa8.23□□□□□ -1.09
SS18-210ENST00000578700 ABHD12Q8N2K0 398 aa8.23□□□□□ -1.09
SS18-210ENST00000578700 LINC00311Q8N616 119 aa8.23□□□□□ -1.09
SS18-210ENST00000578700 DMBX1Q8NFW5 382 aa8.23□□□□□ -1.09
SS18-210ENST00000578700 OR4F5Q8NH21 305 aa8.23□□□□□ -1.09
SS18-210ENST00000578700 C8orf46Q8TAG6 207 aa8.23□□□□□ -1.09
SS18-210ENST00000578700 R3HDM4Q96D70 268 aa8.23□□□□□ -1.09
SS18-210ENST00000578700 PHYHIPLQ96FC7 376 aa8.23□□□□□ -1.09
SS18-210ENST00000578700 RAB40CQ96S21 281 aa8.23□□□□□ -1.09
SS18-210ENST00000578700 A0A087X0M5 115 aa8.22□□□□□ -1.09
SS18-210ENST00000578700 TRAV40A0A0B4J280 105 aa8.22□□□□□ -1.09
SS18-210ENST00000578700 A0A1B0GX30 115 aa8.22□□□□□ -1.09
SS18-210ENST00000578700 J3QR06 171 aa8.22□□□□□ -1.09
SS18-210ENST00000578700 TIMM23O14925 209 aa8.22□□□□□ -1.09
SS18-210ENST00000578700 MMP23AO75900 390 aa8.22□□□□□ -1.09
SS18-210ENST00000578700 JTBO76095 146 aa8.22□□□□□ -1.09
SS18-210ENST00000578700 IGKV1-39P01597 117 aa8.22□□□□□ -1.09
SS18-210ENST00000578700 IGKV1-5P01602 117 aa8.22□□□□□ -1.09
SS18-210ENST00000578700 IGKV1D-39P04432 117 aa8.22□□□□□ -1.09
SS18-210ENST00000578700 G6PCP35575 357 aa8.22□□□□□ -1.09
SS18-210ENST00000578700 POLR2GP62487 172 aaKnown RBP eCLIP8.22□□□□□ -1.09
SS18-210ENST00000578700 ID3Q02535 119 aa8.22□□□□□ -1.09
SS18-210ENST00000578700 PAX8Q06710 450 aa8.22□□□□□ -1.09
SS18-210ENST00000578700 EXOSC2Q13868 293 aaKnown RBP8.22□□□□□ -1.09
SS18-210ENST00000578700 CXorf66Q5JRM2 361 aaPredicted RBP8.22□□□□□ -1.09
SS18-210ENST00000578700 NCR3LG1Q68D85 454 aa8.22□□□□□ -1.09
SS18-210ENST00000578700 BRD3OSQ6XYD6 125 aa8.22□□□□□ -1.09
SS18-210ENST00000578700 STX12Q86Y82 276 aa8.22□□□□□ -1.09
SS18-210ENST00000578700 OR2C3Q8N628 320 aa8.22□□□□□ -1.09
SS18-210ENST00000578700 OR13D1Q8NGV5 346 aa8.22□□□□□ -1.09
SS18-210ENST00000578700 OR4A16Q8NH70 328 aa8.22□□□□□ -1.09
SS18-210ENST00000578700 FAM110DQ8TAY7 271 aaPredicted RBP8.22□□□□□ -1.09
SS18-210ENST00000578700 WFDC12Q8WWY7 111 aa8.22□□□□□ -1.09
SS18-210ENST00000578700 C5orf30Q96GV9 206 aa8.22□□□□□ -1.09
SS18-210ENST00000578700 CIB3Q96Q77 187 aaPredicted RBP8.22□□□□□ -1.09
SS18-210ENST00000578700 MAGT1Q9H0U3 335 aa8.22□□□□□ -1.09
SS18-210ENST00000578700 HEXA-AS1Q9H8Q6 139 aa8.22□□□□□ -1.09
SS18-210ENST00000578700 KMT2CQ8NEZ4 4911 aaKnown RBP8.22□□□□□ -1.09
SS18-210ENST00000578700 A0A1B0GUS0 222 aa8.21□□□□□ -1.1
SS18-210ENST00000578700 H7C2Y5 167 aa8.21□□□□□ -1.1
SS18-210ENST00000578700 M0R1W7 72 aa8.21□□□□□ -1.1
SS18-210ENST00000578700 TXNL1O43396 289 aa8.21□□□□□ -1.1
SS18-210ENST00000578700 SYNGR2O43760 224 aa8.21□□□□□ -1.1
SS18-210ENST00000578700 ENSAO43768 121 aaKnown RBP8.21□□□□□ -1.1
SS18-210ENST00000578700 CHST1O43916 411 aa8.21□□□□□ -1.1
SS18-210ENST00000578700 PITX3O75364 302 aa8.21□□□□□ -1.1
SS18-210ENST00000578700 SCAF4O95104 1147 aaKnown RBP8.21□□□□□ -1.1
SS18-210ENST00000578700 MC5RP33032 325 aa8.21□□□□□ -1.1
SS18-210ENST00000578700 HTR2BP41595 481 aa8.21□□□□□ -1.1
SS18-210ENST00000578700 DLX6P56179 175 aa8.21□□□□□ -1.1
SS18-210ENST00000578700 TAS2R30P59541 319 aa8.21□□□□□ -1.1
SS18-210ENST00000578700 BAXQ07812 192 aa8.21□□□□□ -1.1
SS18-210ENST00000578700 ZNF833PQ6ZTB9 187 aa8.21□□□□□ -1.1
SS18-210ENST00000578700 TGIF2LXQ8IUE1 241 aa8.21□□□□□ -1.1
SS18-210ENST00000578700 ZNF596Q8TC21 504 aa8.21□□□□□ -1.1
SS18-210ENST00000578700 SCARB1Q8WTV0 552 aa8.21□□□□□ -1.1
SS18-210ENST00000578700 ST8SIA2Q92186 375 aa8.21□□□□□ -1.1
SS18-210ENST00000578700 CLEC7AQ9BXN2 247 aa8.21□□□□□ -1.1
SS18-210ENST00000578700 SLC35D1Q9NTN3 355 aa8.21□□□□□ -1.1
SS18-210ENST00000578700 LYRM2Q9NU23 88 aaPredicted RBP8.21□□□□□ -1.1
SS18-210ENST00000578700 POLR3KQ9Y2Y1 108 aaPredicted RBP8.21□□□□□ -1.1
SS18-210ENST00000578700 A0A0G2JRQ6 117 aa8.2□□□□□ -1.1
SS18-210ENST00000578700 CLPSL1A2RUU4 121 aa8.2□□□□□ -1.1
SS18-210ENST00000578700 FCN3O75636 299 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms