RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 MXD1Q05195 221 aa10.41□□□□□ -0.74
CCDC40-216ENST00000576241 ZNF773Q6PK81 442 aa10.41□□□□□ -0.74
CCDC40-216ENST00000576241 ZNF66Q6ZN08 573 aa10.41□□□□□ -0.74
CCDC40-216ENST00000576241 ISOC1Q96CN7 298 aa10.41□□□□□ -0.74
CCDC40-216ENST00000576241 SPATA25Q9BR10 227 aa10.41□□□□□ -0.74
CCDC40-216ENST00000576241 TAS2R8Q9NYW2 309 aa10.41□□□□□ -0.74
CCDC40-216ENST00000576241 ZNF257Q9Y2Q1 563 aa10.41□□□□□ -0.74
CCDC40-216ENST00000576241 ETV7Q9Y603 341 aa10.41□□□□□ -0.74
CCDC40-216ENST00000576241 TRAV18A0A075B6X5 111 aa10.4□□□□□ -0.74
CCDC40-216ENST00000576241 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.4□□□□□ -0.74
CCDC40-216ENST00000576241 LOC100506127A0A0U1RQW1 187 aa10.4□□□□□ -0.74
CCDC40-216ENST00000576241 HMX3A6NHT5 357 aa10.4□□□□□ -0.74
CCDC40-216ENST00000576241 OR2J3O76001 311 aa10.4□□□□□ -0.74
CCDC40-216ENST00000576241 HRASP01112 189 aa10.4□□□□□ -0.74
CCDC40-216ENST00000576241 MAS1LP35410 378 aa10.4□□□□□ -0.74
CCDC40-216ENST00000576241 KIR2DS2P43631 304 aa10.4□□□□□ -0.74
CCDC40-216ENST00000576241 RPL27AP46776 148 aaKnown RBP10.4□□□□□ -0.74
CCDC40-216ENST00000576241 C15orf32Q32M92 178 aa10.4□□□□□ -0.74
CCDC40-216ENST00000576241 IDNKQ5T6J7 187 aa10.4□□□□□ -0.74
CCDC40-216ENST00000576241 MFSD4AQ8N468 514 aa10.4□□□□□ -0.74
CCDC40-216ENST00000576241 BEST4Q8NFU0 473 aa10.4□□□□□ -0.74
CCDC40-216ENST00000576241 TMEM167AQ8TBQ9 72 aa10.4□□□□□ -0.74
CCDC40-216ENST00000576241 DYNLRB2Q8TF09 96 aa10.4□□□□□ -0.74
CCDC40-216ENST00000576241 SECTM1Q8WVN6 248 aa10.4□□□□□ -0.74
CCDC40-216ENST00000576241 KCTD12Q96CX2 325 aaKnown RBP10.4□□□□□ -0.74
CCDC40-216ENST00000576241 FYTTD1Q96QD9 318 aaKnown RBP10.4□□□□□ -0.74
CCDC40-216ENST00000576241 A0A0A6YYH2 397 aa10.39□□□□□ -0.75
CCDC40-216ENST00000576241 A6NJ64 397 aa10.39□□□□□ -0.75
CCDC40-216ENST00000576241 NPIPB5A8MRT5 1133 aa10.39□□□□□ -0.75
CCDC40-216ENST00000576241 TEX22C9J3V5 150 aa10.39□□□□□ -0.75
CCDC40-216ENST00000576241 DHFRP00374 187 aa10.39□□□□□ -0.75
CCDC40-216ENST00000576241 FCGR2CP31995 323 aa10.39□□□□□ -0.75
CCDC40-216ENST00000576241 MSMO1Q15800 293 aa10.39□□□□□ -0.75
CCDC40-216ENST00000576241 PUSL1Q8N0Z8 303 aaKnown RBP10.39□□□□□ -0.75
CCDC40-216ENST00000576241 OR13F1Q8NGS4 319 aa10.39□□□□□ -0.75
CCDC40-216ENST00000576241 AIFM2Q9BRQ8 373 aa10.39□□□□□ -0.75
CCDC40-216ENST00000576241 THAP7Q9BT49 309 aaPredicted RBP10.39□□□□□ -0.75
CCDC40-216ENST00000576241 DIABLOQ9NR28 239 aa10.39□□□□□ -0.75
CCDC40-216ENST00000576241 SLC2A9Q9NRM0 540 aa10.39□□□□□ -0.75
CCDC40-216ENST00000576241 FBXL7Q9UJT9 491 aa10.39□□□□□ -0.75
CCDC40-216ENST00000576241 IZUMO1RA6ND01 250 aa10.38□□□□□ -0.75
CCDC40-216ENST00000576241 TNFSF12O43508 249 aa10.38□□□□□ -0.75
CCDC40-216ENST00000576241 GGCTO75223 188 aaKnown RBP10.38□□□□□ -0.75
CCDC40-216ENST00000576241 IFNA6P05013 189 aa10.38□□□□□ -0.75
CCDC40-216ENST00000576241 CLEC2LP0C7M8 214 aa10.38□□□□□ -0.75
CCDC40-216ENST00000576241 EIF4EBP1Q13541 118 aaPredicted RBP10.38□□□□□ -0.75
CCDC40-216ENST00000576241 HAGHQ16775 308 aa10.38□□□□□ -0.75
CCDC40-216ENST00000576241 SSX9Q7RTT3 188 aa10.38□□□□□ -0.75
CCDC40-216ENST00000576241 HOGA1Q86XE5 327 aa10.38□□□□□ -0.75
CCDC40-216ENST00000576241 LAX1Q8IWV1 398 aa10.38□□□□□ -0.75
CCDC40-216ENST00000576241 GVQW1Q8N7I0 195 aa10.38□□□□□ -0.75
CCDC40-216ENST00000576241 SLC25A38Q96DW6 304 aa10.38□□□□□ -0.75
CCDC40-216ENST00000576241 SLC2A8Q9NY64 477 aa10.38□□□□□ -0.75
CCDC40-216ENST00000576241 PPP5D1E7EU14 171 aa10.37□□□□□ -0.75
CCDC40-216ENST00000576241 TPPPO94811 219 aa10.37□□□□□ -0.75
CCDC40-216ENST00000576241 PPYP01298 95 aa10.37□□□□□ -0.75
CCDC40-216ENST00000576241 IL6RP08887 468 aaPredicted RBP10.37□□□□□ -0.75
CCDC40-216ENST00000576241 ZNF735P0CB33 412 aa10.37□□□□□ -0.75
CCDC40-216ENST00000576241 DEFA4P12838 97 aa10.37□□□□□ -0.75
CCDC40-216ENST00000576241 HLA-GP17693 338 aa10.37□□□□□ -0.75
CCDC40-216ENST00000576241 CBX5P45973 191 aa10.37□□□□□ -0.75
CCDC40-216ENST00000576241 MECP2P51608 486 aaKnown RBP10.37□□□□□ -0.75
CCDC40-216ENST00000576241 BRWD1-AS2P59051 145 aa10.37□□□□□ -0.75
CCDC40-216ENST00000576241 CD81P60033 236 aa10.37□□□□□ -0.75
CCDC40-216ENST00000576241 RPL8P62917 257 aaKnown RBP10.37□□□□□ -0.75
CCDC40-216ENST00000576241 CATR1Q13166 79 aa10.37□□□□□ -0.75
CCDC40-216ENST00000576241 NEDD8Q15843 81 aa10.37□□□□□ -0.75
CCDC40-216ENST00000576241 CD300EQ496F6 205 aaPredicted RBP10.37□□□□□ -0.75
CCDC40-216ENST00000576241 C19orf35Q6ZS72 473 aa10.37□□□□□ -0.75
CCDC40-216ENST00000576241 SPAG16Q8N0X2 631 aa10.37□□□□□ -0.75
CCDC40-216ENST00000576241 ZBTB34Q8NCN2 500 aa10.37□□□□□ -0.75
CCDC40-216ENST00000576241 OR5H6Q8NGV6 325 aa10.37□□□□□ -0.75
CCDC40-216ENST00000576241 OR4A5Q8NH83 315 aa10.37□□□□□ -0.75
CCDC40-216ENST00000576241 GPHA2Q96T91 129 aa10.37□□□□□ -0.75
CCDC40-216ENST00000576241 SLC5A7Q9GZV3 580 aa10.37□□□□□ -0.75
CCDC40-216ENST00000576241 RNF167Q9H6Y7 350 aa10.37□□□□□ -0.75
CCDC40-216ENST00000576241 HRASLSQ9HDD0 168 aa10.37□□□□□ -0.75
CCDC40-216ENST00000576241 CCL28Q9NRJ3 127 aa10.37□□□□□ -0.75
CCDC40-216ENST00000576241 RBFOX2O43251 390 aaKnown RBP eCLIP10.36□□□□□ -0.75
CCDC40-216ENST00000576241 OR2C1O95371 312 aa10.36□□□□□ -0.75
CCDC40-216ENST00000576241 HLA-AP01891 365 aaKnown RBP10.36□□□□□ -0.75
CCDC40-216ENST00000576241 FCER2P06734 321 aa10.36□□□□□ -0.75
CCDC40-216ENST00000576241 CRYGCP07315 174 aa10.36□□□□□ -0.75
CCDC40-216ENST00000576241 PTHLHP12272 177 aa10.36□□□□□ -0.75
CCDC40-216ENST00000576241 FOLR2P14207 255 aa10.36□□□□□ -0.75
CCDC40-216ENST00000576241 AREGP15514 252 aa10.36□□□□□ -0.75
CCDC40-216ENST00000576241 HIST1H1BP16401 226 aaKnown RBP10.36□□□□□ -0.75
CCDC40-216ENST00000576241 PSMB6P28072 239 aa10.36□□□□□ -0.75
CCDC40-216ENST00000576241 ARL3P36405 182 aa10.36□□□□□ -0.75
CCDC40-216ENST00000576241 FXYD4P59646 89 aa10.36□□□□□ -0.75
CCDC40-216ENST00000576241 TIMM50Q3ZCQ8 353 aa10.36□□□□□ -0.75
CCDC40-216ENST00000576241 EEF1AKMT3Q96AZ1 226 aa10.36□□□□□ -0.75
CCDC40-216ENST00000576241 NEURL2Q9BR09 285 aa10.36□□□□□ -0.75
CCDC40-216ENST00000576241 AUNIPQ9H7T9 357 aa10.36□□□□□ -0.75
CCDC40-216ENST00000576241 EDA2RQ9HAV5 297 aa10.36□□□□□ -0.75
CCDC40-216ENST00000576241 PLEKHA3Q9HB20 300 aa10.36□□□□□ -0.75
CCDC40-216ENST00000576241 BET1LQ9NYM9 111 aa10.36□□□□□ -0.75
CCDC40-216ENST00000576241 TECRQ9NZ01 308 aaKnown RBP10.36□□□□□ -0.75
CCDC40-216ENST00000576241 CEPT1Q9Y6K0 416 aa10.36□□□□□ -0.75
CCDC40-216ENST00000576241 FRAS1Q86XX4 4008 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms