RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 CD1BP29016 333 aa8.31□□□□□ -1.08
VPS53-220ENST00000576149 VDAC2P45880 294 aaPredicted RBP8.31□□□□□ -1.08
VPS53-220ENST00000576149 TLE1Q04724 770 aa8.31□□□□□ -1.08
VPS53-220ENST00000576149 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.31□□□□□ -1.08
VPS53-220ENST00000576149 NUP37Q8NFH4 326 aa8.31□□□□□ -1.08
VPS53-220ENST00000576149 LEAP2Q969E1 77 aa8.31□□□□□ -1.08
VPS53-220ENST00000576149 RAB24Q969Q5 203 aa8.31□□□□□ -1.08
VPS53-220ENST00000576149 GAFA1Q96PS6 74 aa8.31□□□□□ -1.08
VPS53-220ENST00000576149 ZNF251Q9BRH9 671 aa8.31□□□□□ -1.08
VPS53-220ENST00000576149 TMEM140Q9NV12 185 aa8.31□□□□□ -1.08
VPS53-220ENST00000576149 WDR83OSQ9Y284 106 aa8.31□□□□□ -1.08
VPS53-220ENST00000576149 URGCP-MRPS24S4R325 110 aa8.31□□□□□ -1.08
VPS53-220ENST00000576149 CADP27708 2225 aa8.31□□□□□ -1.08
VPS53-220ENST00000576149 TRGV10A0A0A0MS01 117 aa8.31□□□□□ -1.08
VPS53-220ENST00000576149 TRAV3A0A0B4J244 114 aa8.31□□□□□ -1.08
VPS53-220ENST00000576149 TRAV20A0A0B4J274 112 aa8.31□□□□□ -1.08
VPS53-220ENST00000576149 A0A1W2PN81 502 aa8.31□□□□□ -1.08
VPS53-220ENST00000576149 MKRN2OSH3BPM6 223 aa8.31□□□□□ -1.08
VPS53-220ENST00000576149 AP4M1O00189 453 aa8.31□□□□□ -1.08
VPS53-220ENST00000576149 CYB5BO43169 146 aa8.31□□□□□ -1.08
VPS53-220ENST00000576149 CHRNA7P36544 502 aa8.31□□□□□ -1.08
VPS53-220ENST00000576149 NBL1P41271 181 aa8.31□□□□□ -1.08
VPS53-220ENST00000576149 PSMB3P49720 205 aa8.31□□□□□ -1.08
VPS53-220ENST00000576149 RND2P52198 227 aa8.31□□□□□ -1.08
VPS53-220ENST00000576149 ZNF788Q6ZQV5 615 aa8.31□□□□□ -1.08
VPS53-220ENST00000576149 TCF23Q7RTU1 214 aa8.31□□□□□ -1.08
VPS53-220ENST00000576149 DOLPP1Q86YN1 238 aa8.31□□□□□ -1.08
VPS53-220ENST00000576149 DEFB108BQ8NET1 73 aa8.31□□□□□ -1.08
VPS53-220ENST00000576149 SLC24A4Q8NFF2 622 aa8.31□□□□□ -1.08
VPS53-220ENST00000576149 OR4S2Q8NH73 311 aa8.31□□□□□ -1.08
VPS53-220ENST00000576149 DIRC2Q96SL1 478 aa8.31□□□□□ -1.08
VPS53-220ENST00000576149 SAA2-SAA4A0A096LPE2 208 aa8.3□□□□□ -1.08
VPS53-220ENST00000576149 TGIF2-C20orf24A0A0A6YYL0 155 aa8.3□□□□□ -1.08
VPS53-220ENST00000576149 TMEM250H0YL14 139 aa8.3□□□□□ -1.08
VPS53-220ENST00000576149 GFRA3O60609 400 aa8.3□□□□□ -1.08
VPS53-220ENST00000576149 IFNA10P01566 189 aa8.3□□□□□ -1.08
VPS53-220ENST00000576149 S100A8P05109 93 aa8.3□□□□□ -1.08
VPS53-220ENST00000576149 SAA2P0DJI9 122 aaPredicted RBP8.3□□□□□ -1.08
VPS53-220ENST00000576149 TMPRSS3P57727 454 aa8.3□□□□□ -1.08
VPS53-220ENST00000576149 ZNF439Q8NDP4 499 aa8.3□□□□□ -1.08
VPS53-220ENST00000576149 GGACTQ9BVM4 153 aa8.3□□□□□ -1.08
VPS53-220ENST00000576149 LINC00574Q9H8X3 128 aa8.3□□□□□ -1.08
VPS53-220ENST00000576149 HEYLQ9NQ87 328 aaPredicted RBP8.3□□□□□ -1.08
VPS53-220ENST00000576149 MANBALQ9NQG1 85 aa8.3□□□□□ -1.08
VPS53-220ENST00000576149 A0A0G2JNJ9 132 aa8.3□□□□□ -1.08
VPS53-220ENST00000576149 PRSS46E5RG02 174 aa8.3□□□□□ -1.08
VPS53-220ENST00000576149 RRHO14718 337 aa8.3□□□□□ -1.08
VPS53-220ENST00000576149 SOX15O60248 233 aa8.3□□□□□ -1.08
VPS53-220ENST00000576149 THBS3P49746 956 aa8.3□□□□□ -1.08
VPS53-220ENST00000576149 TDGF1P3P51864 188 aa8.3□□□□□ -1.08
VPS53-220ENST00000576149 ACOT6Q3I5F7 207 aaPredicted RBP8.3□□□□□ -1.08
VPS53-220ENST00000576149 TMEM108Q6UXF1 575 aa8.3□□□□□ -1.08
VPS53-220ENST00000576149 CCL13Q99616 98 aa8.3□□□□□ -1.08
VPS53-220ENST00000576149 IDI2-AS1Q9NZ38 188 aa8.3□□□□□ -1.08
VPS53-220ENST00000576149 Q9UFV3 132 aa8.3□□□□□ -1.08
VPS53-220ENST00000576149 NAT8Q9UHE5 227 aa8.3□□□□□ -1.08
VPS53-220ENST00000576149 DOCK11Q5JSL3 2073 aa8.3□□□□□ -1.08
VPS53-220ENST00000576149 LAMA5O15230 3695 aa8.29□□□□□ -1.08
VPS53-220ENST00000576149 TRGV8A0A0C4DH27 118 aa8.29□□□□□ -1.08
VPS53-220ENST00000576149 ZNF729A6NN14 1252 aaPredicted RBP8.29□□□□□ -1.08
VPS53-220ENST00000576149 C15orf61A6NNL5 157 aa8.29□□□□□ -1.08
VPS53-220ENST00000576149 SEC14L6B5MCN3 397 aa8.29□□□□□ -1.08
VPS53-220ENST00000576149 CLDN34H7C241 214 aa8.29□□□□□ -1.08
VPS53-220ENST00000576149 PRRG2O14669 202 aa8.29□□□□□ -1.08
VPS53-220ENST00000576149 MPDU1O75352 247 aa8.29□□□□□ -1.08
VPS53-220ENST00000576149 KBTBD11O94819 623 aa8.29□□□□□ -1.08
VPS53-220ENST00000576149 GYPAP02724 150 aa8.29□□□□□ -1.08
VPS53-220ENST00000576149 IRF2P14316 349 aa8.29□□□□□ -1.08
VPS53-220ENST00000576149 MRPS11P82912 194 aaKnown RBP8.29□□□□□ -1.08
VPS53-220ENST00000576149 TEX36Q5VZQ5 186 aa8.29□□□□□ -1.08
VPS53-220ENST00000576149 CYP2G1PQ6ZSU1 146 aa8.29□□□□□ -1.08
VPS53-220ENST00000576149 TGIF2LYQ8IUE0 185 aa8.29□□□□□ -1.08
VPS53-220ENST00000576149 FAM216BQ8N7L0 139 aa8.29□□□□□ -1.08
VPS53-220ENST00000576149 GATAD1Q8WUU5 269 aa8.29□□□□□ -1.08
VPS53-220ENST00000576149 TMEM170AQ8WVE7 144 aa8.29□□□□□ -1.08
VPS53-220ENST00000576149 CORO2AQ92828 525 aa8.29□□□□□ -1.08
VPS53-220ENST00000576149 SMIM7Q9BQ49 75 aa8.29□□□□□ -1.08
VPS53-220ENST00000576149 ELOVL5Q9NYP7 299 aa8.29□□□□□ -1.08
VPS53-220ENST00000576149 TCF19Q9Y242 345 aa8.29□□□□□ -1.08
VPS53-220ENST00000576149 DSCAMO60469 2012 aa8.29□□□□□ -1.08
VPS53-220ENST00000576149 C16orf97H3BN30 126 aa8.29□□□□□ -1.08
VPS53-220ENST00000576149 CDC34P49427 236 aaPredicted RBP8.29□□□□□ -1.08
VPS53-220ENST00000576149 KIAA0141Q14154 515 aaPredicted RBP8.29□□□□□ -1.08
VPS53-220ENST00000576149 TMEM241Q24JQ0 296 aa8.29□□□□□ -1.08
VPS53-220ENST00000576149 OR4A47Q6IF82 309 aa8.29□□□□□ -1.08
VPS53-220ENST00000576149 TREML4Q6UXN2 200 aa8.29□□□□□ -1.08
VPS53-220ENST00000576149 LYG1Q8N1E2 194 aa8.29□□□□□ -1.08
VPS53-220ENST00000576149 ABHD12Q8N2K0 398 aa8.29□□□□□ -1.08
VPS53-220ENST00000576149 ZNF383Q8NA42 475 aa8.29□□□□□ -1.08
VPS53-220ENST00000576149 ADTRPQ96IZ2 230 aa8.29□□□□□ -1.08
VPS53-220ENST00000576149 RHOVQ96L33 236 aa8.29□□□□□ -1.08
VPS53-220ENST00000576149 CTDSP1Q9GZU7 261 aa8.29□□□□□ -1.08
VPS53-220ENST00000576149 BOD1L1Q8NFC6 3051 aa8.28□□□□□ -1.08
VPS53-220ENST00000576149 SMIM6P0DI80 62 aa8.28□□□□□ -1.08
VPS53-220ENST00000576149 DEFA4P12838 97 aa8.28□□□□□ -1.08
VPS53-220ENST00000576149 TMEM249Q2WGJ8 235 aa8.28□□□□□ -1.08
VPS53-220ENST00000576149 TMEM30BQ3MIR4 351 aa8.28□□□□□ -1.08
VPS53-220ENST00000576149 RAB1CQ92928 201 aa8.28□□□□□ -1.08
VPS53-220ENST00000576149 FOXA2Q9Y261 457 aaPredicted RBP8.28□□□□□ -1.08
VPS53-220ENST00000576149 ZNF292O60281 2723 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms