RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 TMEM189A5PLL7 270 aa12.98□□□□□ -0.33
CIITA-204ENST00000570546 HOXA4Q00056 320 aaPredicted RBP12.98□□□□□ -0.33
CIITA-204ENST00000570546 PGLYRP4Q96LB8 373 aa12.98□□□□□ -0.33
CIITA-204ENST00000570546 ZNF716A6NP11 495 aa12.98□□□□□ -0.33
CIITA-204ENST00000570546 CYTL1Q9NRR1 136 aa12.98□□□□□ -0.33
CIITA-204ENST00000570546 CDC42EP3Q9UKI2 254 aa12.98□□□□□ -0.33
CIITA-204ENST00000570546 A6NDN8 102 aa12.98□□□□□ -0.33
CIITA-204ENST00000570546 KIAA1644Q3SXP7 199 aa12.98□□□□□ -0.33
CIITA-204ENST00000570546 CENPWQ5EE01 88 aa12.98□□□□□ -0.33
CIITA-204ENST00000570546 PET117Q6UWS5 81 aa12.98□□□□□ -0.33
CIITA-204ENST00000570546 OR5R1Q8NH85 324 aa12.98□□□□□ -0.33
CIITA-204ENST00000570546 REG1AP05451 166 aa12.97□□□□□ -0.33
CIITA-204ENST00000570546 LHFPL1Q86WI0 220 aa12.97□□□□□ -0.33
CIITA-204ENST00000570546 TCF21O43680 179 aa12.97□□□□□ -0.33
CIITA-204ENST00000570546 LHX2P50458 406 aa12.97□□□□□ -0.33
CIITA-204ENST00000570546 PMCHL1Q16048 86 aa12.97□□□□□ -0.33
CIITA-204ENST00000570546 OR4D5Q8NGN0 318 aa12.97□□□□□ -0.33
CIITA-204ENST00000570546 OR4C13Q8NGP0 309 aa12.97□□□□□ -0.33
CIITA-204ENST00000570546 RRHO14718 337 aa12.97□□□□□ -0.33
CIITA-204ENST00000570546 CECR9P0C854 216 aa12.97□□□□□ -0.33
CIITA-204ENST00000570546 TWIST1Q15672 202 aa12.97□□□□□ -0.33
CIITA-204ENST00000570546 CABIN1Q9Y6J0 2220 aa12.97□□□□□ -0.33
CIITA-204ENST00000570546 HOXA5P20719 270 aa12.97□□□□□ -0.33
CIITA-204ENST00000570546 CRYGSP22914 178 aa12.97□□□□□ -0.33
CIITA-204ENST00000570546 TMEM177Q53S58 311 aa12.97□□□□□ -0.33
CIITA-204ENST00000570546 REC114Q7Z4M0 266 aa12.97□□□□□ -0.33
CIITA-204ENST00000570546 CCL21O00585 134 aa12.96□□□□□ -0.33
CIITA-204ENST00000570546 CBLN1P23435 193 aa12.96□□□□□ -0.33
CIITA-204ENST00000570546 SUPT4H1P63272 117 aaKnown RBP12.96□□□□□ -0.33
CIITA-204ENST00000570546 PSG7Q13046 419 aa12.96□□□□□ -0.33
CIITA-204ENST00000570546 MRPL37Q9BZE1 423 aaKnown RBP12.96□□□□□ -0.33
CIITA-204ENST00000570546 PRDM6Q9NQX0 595 aa12.96□□□□□ -0.33
CIITA-204ENST00000570546 CBLN4Q9NTU7 201 aa12.96□□□□□ -0.33
CIITA-204ENST00000570546 ZFP30Q9Y2G7 519 aa12.96□□□□□ -0.33
CIITA-204ENST00000570546 CELA3BP08861 270 aa12.96□□□□□ -0.33
CIITA-204ENST00000570546 LCN2P80188 198 aa12.96□□□□□ -0.33
CIITA-204ENST00000570546 FHL1Q13642 323 aa12.96□□□□□ -0.33
CIITA-204ENST00000570546 HSPB7Q9UBY9 170 aa12.96□□□□□ -0.33
CIITA-204ENST00000570546 TMEM186Q96B77 213 aa12.96□□□□□ -0.34
CIITA-204ENST00000570546 HINT1P49773 126 aaPredicted RBP12.96□□□□□ -0.34
CIITA-204ENST00000570546 OR51G1Q8NGK1 321 aa12.96□□□□□ -0.34
CIITA-204ENST00000570546 UQCR10Q9UDW1 63 aa12.96□□□□□ -0.34
CIITA-204ENST00000570546 IQCF6A8MYZ5 107 aa12.95□□□□□ -0.34
CIITA-204ENST00000570546 IGHV1-2P23083 117 aa12.95□□□□□ -0.34
CIITA-204ENST00000570546 RELBQ01201 579 aa12.95□□□□□ -0.34
CIITA-204ENST00000570546 ZIC4Q8N9L1 334 aa12.95□□□□□ -0.34
CIITA-204ENST00000570546 WDR31Q8NA23 367 aa12.95□□□□□ -0.34
CIITA-204ENST00000570546 FDCSPQ8NFU4 85 aa12.95□□□□□ -0.34
CIITA-204ENST00000570546 FOXD3Q9UJU5 478 aaPredicted RBP12.95□□□□□ -0.34
CIITA-204ENST00000570546 NDUFA2O43678 99 aa12.95□□□□□ -0.34
CIITA-204ENST00000570546 NPIPB3Q92617 1050 aa12.95□□□□□ -0.34
CIITA-204ENST00000570546 NABP1Q96AH0 204 aa12.95□□□□□ -0.34
CIITA-204ENST00000570546 ATP5G3P48201 142 aa12.95□□□□□ -0.34
CIITA-204ENST00000570546 LRTM2Q8N967 370 aa12.95□□□□□ -0.34
CIITA-204ENST00000570546 OR4A5Q8NH83 315 aa12.95□□□□□ -0.34
CIITA-204ENST00000570546 OR9G1Q8NH87 305 aa12.95□□□□□ -0.34
CIITA-204ENST00000570546 FGFBP3Q8TAT2 258 aa12.95□□□□□ -0.34
CIITA-204ENST00000570546 WDYHV1Q96HA8 205 aa12.95□□□□□ -0.34
CIITA-204ENST00000570546 NLRC5Q86WI3 1866 aa12.95□□□□□ -0.34
CIITA-204ENST00000570546 IGKV1-12A0A0C4DH73 117 aa12.95□□□□□ -0.34
CIITA-204ENST00000570546 IGKV1D-12P01611 117 aa12.95□□□□□ -0.34
CIITA-204ENST00000570546 ATP5IP56385 69 aaPredicted RBP12.95□□□□□ -0.34
CIITA-204ENST00000570546 DCTN5Q9BTE1 182 aa12.95□□□□□ -0.34
CIITA-204ENST00000570546 DEPPQ9NTK1 212 aa12.95□□□□□ -0.34
CIITA-204ENST00000570546 MAP1BP46821 2468 aaKnown RBP12.95□□□□□ -0.34
CIITA-204ENST00000570546 LNP1A1A4G5 178 aa12.94□□□□□ -0.34
CIITA-204ENST00000570546 CD5P06127 495 aa12.94□□□□□ -0.34
CIITA-204ENST00000570546 LINC00271P0C7V0 271 aa12.94□□□□□ -0.34
CIITA-204ENST00000570546 MYOZ3Q8TDC0 251 aa12.94□□□□□ -0.34
CIITA-204ENST00000570546 SCO2A0A1W2PP80 73 aa12.94□□□□□ -0.34
CIITA-204ENST00000570546 SCN8AQ9UQD0 1980 aa12.94□□□□□ -0.34
CIITA-204ENST00000570546 TRAV24A0A0B4J272 114 aa12.94□□□□□ -0.34
CIITA-204ENST00000570546 A0A1B0GV90 55 aa12.94□□□□□ -0.34
CIITA-204ENST00000570546 PRR19A6NJB7 356 aa12.94□□□□□ -0.34
CIITA-204ENST00000570546 OR4A47Q6IF82 309 aa12.94□□□□□ -0.34
CIITA-204ENST00000570546 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.94□□□□□ -0.34
CIITA-204ENST00000570546 GATAD1Q8WUU5 269 aa12.94□□□□□ -0.34
CIITA-204ENST00000570546 CGAP01215 116 aa12.94□□□□□ -0.34
CIITA-204ENST00000570546 IGHV3-48P01763 117 aa12.94□□□□□ -0.34
CIITA-204ENST00000570546 MGPP08493 103 aa12.94□□□□□ -0.34
CIITA-204ENST00000570546 IGFBP2P18065 325 aa12.94□□□□□ -0.34
CIITA-204ENST00000570546 CCL20P78556 96 aa12.94□□□□□ -0.34
CIITA-204ENST00000570546 ID3Q02535 119 aa12.94□□□□□ -0.34
CIITA-204ENST00000570546 SGK494Q96LW2 274 aa12.94□□□□□ -0.34
CIITA-204ENST00000570546 SSBP3Q9BWW4 388 aaPredicted RBP12.94□□□□□ -0.34
CIITA-204ENST00000570546 IL36BQ9NZH7 164 aa12.94□□□□□ -0.34
CIITA-204ENST00000570546 LEPROTL1O95214 131 aa12.93□□□□□ -0.34
CIITA-204ENST00000570546 MAS1LP35410 378 aa12.93□□□□□ -0.34
CIITA-204ENST00000570546 ZNF324BQ6AW86 544 aaPredicted RBP12.93□□□□□ -0.34
CIITA-204ENST00000570546 ZNF497Q6ZNH5 498 aa12.93□□□□□ -0.34
CIITA-204ENST00000570546 C17orf82Q86X59 251 aaPredicted RBP12.93□□□□□ -0.34
CIITA-204ENST00000570546 H3BTX0 84 aa12.93□□□□□ -0.34
CIITA-204ENST00000570546 ZNF883P0CG24 379 aa12.93□□□□□ -0.34
CIITA-204ENST00000570546 KIR2DL2P43627 348 aaPredicted RBP12.93□□□□□ -0.34
CIITA-204ENST00000570546 TCTAP57738 103 aa12.93□□□□□ -0.34
CIITA-204ENST00000570546 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.93□□□□□ -0.34
CIITA-204ENST00000570546 C1orf162Q8NEQ5 155 aaPredicted RBP12.93□□□□□ -0.34
CIITA-204ENST00000570546 PNRC2Q9NPJ4 139 aaKnown RBP12.93□□□□□ -0.34
CIITA-204ENST00000570546 GPR6P46095 362 aaPredicted RBP12.93□□□□□ -0.34
CIITA-204ENST00000570546 RTN4RL2Q86UN3 420 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms