RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 MAP1LC3BQ9GZQ8 125 aa8.17□□□□□ -1.1
VPS53-206ENST00000570359 PIEZO1Q92508 2521 aa8.17□□□□□ -1.1
VPS53-206ENST00000570359 HRNRQ86YZ3 2850 aaPredicted RBP8.16□□□□□ -1.1
VPS53-206ENST00000570359 IGHV3-72A0A0B4J1Y9 119 aa8.16□□□□□ -1.1
VPS53-206ENST00000570359 YPEL1O60688 119 aa8.16□□□□□ -1.1
VPS53-206ENST00000570359 SCAF4O95104 1147 aaKnown RBP8.16□□□□□ -1.1
VPS53-206ENST00000570359 OR8U8P0C7N1 319 aa8.16□□□□□ -1.1
VPS53-206ENST00000570359 AGAP20933 346 aa8.16□□□□□ -1.1
VPS53-206ENST00000570359 TMEM14EPQ6UXP3 125 aa8.16□□□□□ -1.1
VPS53-206ENST00000570359 ZNF383Q8NA42 475 aa8.16□□□□□ -1.1
VPS53-206ENST00000570359 SSMEM1Q8WWF3 244 aa8.16□□□□□ -1.1
VPS53-206ENST00000570359 LHX4Q969G2 390 aa8.16□□□□□ -1.1
VPS53-206ENST00000570359 YPEL2Q96QA6 119 aa8.16□□□□□ -1.1
VPS53-206ENST00000570359 PATZ1Q9HBE1 687 aaKnown RBP8.16□□□□□ -1.1
VPS53-206ENST00000570359 SLC39A9Q9NUM3 307 aa8.16□□□□□ -1.1
VPS53-206ENST00000570359 ELOVL5Q9NYP7 299 aa8.16□□□□□ -1.1
VPS53-206ENST00000570359 PPIAL4EA0A075B759 164 aa8.16□□□□□ -1.1
VPS53-206ENST00000570359 TRAV38-1A0A0B4J264 116 aa8.16□□□□□ -1.1
VPS53-206ENST00000570359 PPIAL4DF5H284 164 aa8.16□□□□□ -1.1
VPS53-206ENST00000570359 FCN3O75636 299 aa8.16□□□□□ -1.1
VPS53-206ENST00000570359 HPRT1P00492 218 aa8.16□□□□□ -1.1
VPS53-206ENST00000570359 APELAP0DMC3 54 aa8.16□□□□□ -1.1
VPS53-206ENST00000570359 PPIAL4FP0DN26 164 aa8.16□□□□□ -1.1
VPS53-206ENST00000570359 UBE2G2P60604 165 aa8.16□□□□□ -1.1
VPS53-206ENST00000570359 ZNF788Q6ZQV5 615 aa8.16□□□□□ -1.1
VPS53-206ENST00000570359 ZNF709Q8N972 641 aa8.16□□□□□ -1.1
VPS53-206ENST00000570359 IGFBPL1Q8WX77 278 aa8.16□□□□□ -1.1
VPS53-206ENST00000570359 RBM14Q96PK6 669 aaKnown RBP8.16□□□□□ -1.1
VPS53-206ENST00000570359 TMEM204Q9BSN7 226 aa8.16□□□□□ -1.1
VPS53-206ENST00000570359 SMCO4Q9NRQ5 59 aa8.16□□□□□ -1.1
VPS53-206ENST00000570359 IDI2-AS1Q9NZ38 188 aa8.16□□□□□ -1.1
VPS53-206ENST00000570359 PPIAL4AQ9Y536 164 aa8.16□□□□□ -1.1
VPS53-206ENST00000570359 A0A1B0GWJ7 208 aa8.16□□□□□ -1.1
VPS53-206ENST00000570359 H3BQ15 152 aa8.16□□□□□ -1.1
VPS53-206ENST00000570359 IGHV2-5P01817 119 aa8.16□□□□□ -1.1
VPS53-206ENST00000570359 NQO2P16083 231 aa8.16□□□□□ -1.1
VPS53-206ENST00000570359 GPX4P36969 197 aaPredicted RBP8.16□□□□□ -1.1
VPS53-206ENST00000570359 CFHR2P36980 270 aa8.16□□□□□ -1.1
VPS53-206ENST00000570359 CASP6P55212 293 aa8.16□□□□□ -1.1
VPS53-206ENST00000570359 RELQ04864 619 aaPredicted RBP8.16□□□□□ -1.1
VPS53-206ENST00000570359 ZNF429Q86V71 674 aa8.16□□□□□ -1.1
VPS53-206ENST00000570359 LFNGQ8NES3 379 aa8.16□□□□□ -1.1
VPS53-206ENST00000570359 NUP37Q8NFH4 326 aa8.16□□□□□ -1.1
VPS53-206ENST00000570359 CLDND2Q8NHS1 167 aa8.16□□□□□ -1.1
VPS53-206ENST00000570359 TMEM106BQ9NUM4 274 aa8.16□□□□□ -1.1
VPS53-206ENST00000570359 MSRB2Q9Y3D2 182 aa8.16□□□□□ -1.1
VPS53-206ENST00000570359 ITPR1Q14643 2758 aa8.15□□□□□ -1.1
VPS53-206ENST00000570359 PIGBOS1A0A0B4J2F0 54 aa8.15□□□□□ -1.1
VPS53-206ENST00000570359 C15orf62A8K5M9 175 aa8.15□□□□□ -1.1
VPS53-206ENST00000570359 SHISA9B4DS77 424 aa8.15□□□□□ -1.1
VPS53-206ENST00000570359 F2RL2O00254 374 aa8.15□□□□□ -1.1
VPS53-206ENST00000570359 IGHV3-48P01763 117 aa8.15□□□□□ -1.1
VPS53-206ENST00000570359 P0C879 139 aa8.15□□□□□ -1.1
VPS53-206ENST00000570359 TAGLN2P37802 199 aaKnown RBP8.15□□□□□ -1.1
VPS53-206ENST00000570359 GATA4P43694 442 aa8.15□□□□□ -1.1
VPS53-206ENST00000570359 OR4A47Q6IF82 309 aa8.15□□□□□ -1.1
VPS53-206ENST00000570359 ZNF343Q6P1L6 599 aa8.15□□□□□ -1.1
VPS53-206ENST00000570359 RPP25LQ8N5L8 163 aaKnown RBP8.15□□□□□ -1.1
VPS53-206ENST00000570359 KDF1Q8NAX2 398 aaPredicted RBP8.15□□□□□ -1.1
VPS53-206ENST00000570359 OR10G4Q8NGN3 311 aa8.15□□□□□ -1.1
VPS53-206ENST00000570359 OR10G9Q8NGN4 311 aa8.15□□□□□ -1.1
VPS53-206ENST00000570359 OR10G7Q8NGN6 311 aa8.15□□□□□ -1.1
VPS53-206ENST00000570359 RNASE6Q93091 150 aaKnown RBP8.15□□□□□ -1.1
VPS53-206ENST00000570359 TMEM147Q9BVK8 224 aa8.15□□□□□ -1.1
VPS53-206ENST00000570359 CISD1Q9NZ45 108 aaKnown RBP8.15□□□□□ -1.1
VPS53-206ENST00000570359 KIAA1456Q9P272 454 aa8.15□□□□□ -1.1
VPS53-206ENST00000570359 hADV38S2A0JD32 116 aa8.15□□□□□ -1.11
VPS53-206ENST00000570359 DVL1O14640 695 aa8.15□□□□□ -1.11
VPS53-206ENST00000570359 SRP19P09132 144 aaKnown RBP8.15□□□□□ -1.11
VPS53-206ENST00000570359 TMEM41BQ5BJD5 291 aa8.15□□□□□ -1.11
VPS53-206ENST00000570359 COMMD1Q8N668 190 aa8.15□□□□□ -1.11
VPS53-206ENST00000570359 OR4S2Q8NH73 311 aa8.15□□□□□ -1.11
VPS53-206ENST00000570359 RPUSD4Q96CM3 377 aaKnown RBP8.15□□□□□ -1.11
VPS53-206ENST00000570359 RAB39BQ96DA2 213 aa8.15□□□□□ -1.11
VPS53-206ENST00000570359 MRPL20Q9BYC9 149 aaKnown RBP8.15□□□□□ -1.11
VPS53-206ENST00000570359 FAM90A26D6RGX4 464 aa8.14□□□□□ -1.11
VPS53-206ENST00000570359 CD3EP07766 207 aa8.14□□□□□ -1.11
VPS53-206ENST00000570359 C1QTNF9P0C862 333 aa8.14□□□□□ -1.11
VPS53-206ENST00000570359 DEFA6Q01524 100 aa8.14□□□□□ -1.11
VPS53-206ENST00000570359 CLEC12BQ2HXU8 276 aa8.14□□□□□ -1.11
VPS53-206ENST00000570359 DNLZQ5SXM8 178 aa8.14□□□□□ -1.11
VPS53-206ENST00000570359 TMEM200BQ69YZ2 307 aa8.14□□□□□ -1.11
VPS53-206ENST00000570359 MOB3BQ86TA1 216 aa8.14□□□□□ -1.11
VPS53-206ENST00000570359 DMRTC2Q8IXT2 367 aaPredicted RBP8.14□□□□□ -1.11
VPS53-206ENST00000570359 OR10X1Q8NGY0 326 aa8.14□□□□□ -1.11
VPS53-206ENST00000570359 FAM222BQ8WU58 562 aa8.14□□□□□ -1.11
VPS53-206ENST00000570359 ZCCHC14Q8WYQ9 949 aaKnown RBP8.14□□□□□ -1.11
VPS53-206ENST00000570359 NPCDR1Q9BY65 106 aa8.14□□□□□ -1.11
VPS53-206ENST00000570359 HIPK2Q9H2X6 1198 aa8.14□□□□□ -1.11
VPS53-206ENST00000570359 TUBA4BQ9H853 241 aa8.14□□□□□ -1.11
VPS53-206ENST00000570359 SLC35D1Q9NTN3 355 aa8.14□□□□□ -1.11
VPS53-206ENST00000570359 CTSZQ9UBR2 303 aa8.14□□□□□ -1.11
VPS53-206ENST00000570359 LAMP3Q9UQV4 416 aa8.14□□□□□ -1.11
VPS53-206ENST00000570359 TCF19Q9Y242 345 aa8.14□□□□□ -1.11
VPS53-206ENST00000570359 TRBV23-1A0A0A0MS06 115 aa8.14□□□□□ -1.11
VPS53-206ENST00000570359 TMEM178BH3BS89 294 aa8.14□□□□□ -1.11
VPS53-206ENST00000570359 NDUFB3O43676 98 aa8.14□□□□□ -1.11
VPS53-206ENST00000570359 ENSAO43768 121 aaKnown RBP8.14□□□□□ -1.11
VPS53-206ENST00000570359 HBE1P02100 147 aa8.14□□□□□ -1.11
VPS53-206ENST00000570359 MT-ND4LP03901 98 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 98 ms