RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 IGLV3-19P01714 112 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 CSN2P05814 226 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 PRSS1P07477 247 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 PRSS2P07478 247 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 OR10J4P0C629 311 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 OR8U8P0C7N1 319 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 FGF6P10767 208 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 SPNP16150 400 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 CNTFRP26992 372 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 DRD3P35462 400 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 CD200P41217 278 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 RPS20P60866 119 aaKnown RBP2.19□□□□□ -2.06
VPS35-209ENST00000568642 SRPXP78539 464 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 HPCAP84074 193 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 GTF2BQ00403 316 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 PRDX4Q13162 271 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 HERPUD1Q15011 391 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 KIAA0040Q15053 153 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 SNRNP35Q16560 246 aaKnown RBP2.19□□□□□ -2.06
VPS35-209ENST00000568642 OR2B11Q5JQS5 317 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 CASC10Q5T4H9 136 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 ADAMTSL4-AS1Q5T5F5 129 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 C9orf57Q5W0N0 161 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 GLYATQ6IB77 296 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 SLC35E4Q6ICL7 350 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 C11orf87Q6NUJ2 197 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 GUSBP11Q6P575 273 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 DGAT2L6Q6ZPD8 337 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 ZNF571Q7Z3V5 609 aaPredicted RBP2.19□□□□□ -2.06
VPS35-209ENST00000568642 C6orf120Q7Z4R8 191 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 TMEM179BQ7Z7N9 219 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 MARCH3Q86UD3 253 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 RFLNBQ8N5W9 214 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 SLC35G3Q8N808 338 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 YIPF7Q8N8F6 280 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 BEST4Q8NFU0 473 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 OR8B12Q8NGG6 310 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 OR51A2Q8NGJ7 313 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 OR1N2Q8NGR9 330 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 OR2K2Q8NGT1 345 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 COQ8AQ8NI60 647 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 GPR119Q8TDV5 335 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 TNFAIP8L1Q8WVP5 186 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 ACOT12Q8WYK0 555 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 KLK6Q92876 244 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 FAM3DQ96BQ1 224 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 ZHX1-C8orf76Q96EF9 292 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 GMPPAQ96IJ6 420 aaPredicted RBP2.19□□□□□ -2.06
VPS35-209ENST00000568642 KCNS1Q96KK3 526 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 ZNF354BQ96LW1 612 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 GGACTQ9BVM4 153 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 GABARAPL3Q9BY60 117 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 OCR1Q9BZK8 76 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 EXOSC4Q9NPD3 245 aaKnown RBP2.19□□□□□ -2.06
VPS35-209ENST00000568642 TMEM138Q9NPI0 162 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 DOK5Q9P104 306 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 PCYOX1Q9UHG3 505 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 GLS2Q9UI32 602 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 U3KQA8 63 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 NYNRINQ9P2P1 1898 aaKnown RBP2.19□□□□□ -2.06
VPS35-209ENST00000568642 DNAJC13O75165 2243 aa2.19□□□□□ -2.06
VPS35-209ENST00000568642 EML6Q6ZMW3 1958 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 IGLV4-3A0A075B6K6 122 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 TRAV9-2A0A087WT02 112 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 IGKV6-21A0A0C4DH24 114 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 IGHV3-35A0A0C4DH35 117 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 IQCMA0A1B0GVH7 501 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 SIGLEC16A6NMB1 481 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 SMIM1B2RUZ4 78 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 EPM2AB3EWF7 344 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 D6RAR5 112 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 C16orf97H3BN30 126 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 LMX1BO60663 402 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 RAMP2O60895 175 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 SRSF10O75494 262 aaKnown RBP2.18□□□□□ -2.06
VPS35-209ENST00000568642 OR2A4O95047 310 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 H2AFZP0C0S5 128 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 FAM228BP0C875 321 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 CHTF8P0CG12 524 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 ERGP11308 486 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 RPL7P18124 248 aaKnown RBP2.18□□□□□ -2.06
VPS35-209ENST00000568642 IL1RNP18510 177 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 GABRR1P24046 479 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 ZBTB25P24278 435 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 KDELR1P24390 212 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 CDK2P24941 298 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 LMO2P25791 158 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 SRIP30626 198 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 CTBP2P56545 445 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 LINC00313P59037 77 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 SLC35A2P78381 396 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 DAZ2Q13117 558 aaKnown RBP2.18□□□□□ -2.06
VPS35-209ENST00000568642 ERCC8Q13216 396 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 C16orf72Q14CZ0 275 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 RBMY1FQ15415 496 aaKnown RBP2.18□□□□□ -2.06
VPS35-209ENST00000568642 NRF1Q16656 503 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 GUCA2BQ16661 112 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 FAM222AQ5U5X8 452 aa2.18□□□□□ -2.06
VPS35-209ENST00000568642 RSBN1Q5VWQ0 802 aaPredicted RBP2.18□□□□□ -2.06
VPS35-209ENST00000568642 LCN8Q6JVE9 175 aa2.18□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms