RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 FAM106AQ4KMX7 169 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 Q6AWC8 147 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 ZNF880Q6PDB4 577 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 ZNF322Q6U7Q0 402 aaPredicted RBP2.68□□□□□ -1.98
VPS35-208ENST00000568612 CYP2G1PQ6ZSU1 146 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 IL17RELQ6ZVW7 336 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 RPS27LQ71UM5 84 aaKnown RBP2.68□□□□□ -1.98
VPS35-208ENST00000568612 SLC25A42Q86VD7 318 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 TMEM219Q86XT9 240 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 OR2L13Q8N349 312 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 TEX29Q8N6K0 151 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 SIGLECL1Q8N7X8 197 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 OR2M3Q8NG83 312 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 OR10G7Q8NGN6 311 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 OR10Q1Q8NGQ4 319 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 OR13A1Q8NGR1 328 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 OR4K13Q8NH42 304 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 OR10G6Q8NH81 332 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 VSTM2AQ8TAG5 236 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 ZNF502Q8TBZ5 544 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 SAP25Q8TEE9 199 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 CT55Q8WUE5 264 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 MBD3L1Q8WWY6 194 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 BAALCQ8WXS3 180 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 TMEM37Q8WXS4 190 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 OR5P2Q8WZ92 322 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 AMELYQ99218 206 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 LINC01587Q99440 93 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 PMCHL2Q9BQD1 86 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 NAA38Q9BRA0 125 aaKnown RBP2.68□□□□□ -1.98
VPS35-208ENST00000568612 MRPL32Q9BYC8 188 aaKnown RBP2.68□□□□□ -1.98
VPS35-208ENST00000568612 KRTAP1-5Q9BYS1 174 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 COMMD5Q9GZQ3 224 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 PRORYQ9H606 182 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 PLEKHF2Q9H8W4 249 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 HRASLS2Q9NWW9 162 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 C1RLQ9NZP8 487 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 WRAP73Q9P2S5 460 aaPredicted RBP2.68□□□□□ -1.98
VPS35-208ENST00000568612 TP53TG3Q9ULZ0 132 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 HIGD1AQ9Y241 93 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 LSM5Q9Y4Y9 91 aaKnown RBP2.68□□□□□ -1.98
VPS35-208ENST00000568612 IER3IP1Q9Y5U9 82 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 PXMP4Q9Y6I8 212 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 PLXNA4Q9HCM2 1894 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 ANKRD12Q6UB98 2062 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 SCN8AQ9UQD0 1980 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 UBR3Q6ZT12 1888 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 CPAMD8Q8IZJ3 1885 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 TRAV9-1A0A075B6T8 112 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 A0A1W2PP11 408 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 A0A1W2PRD5 423 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 TSPAN11A1L157 253 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 ZNF736B4DX44 427 aaPredicted RBP2.67□□□□□ -1.98
VPS35-208ENST00000568612 F8W1H4 67 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 H0YIG0 161 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 CLDN5O00501 218 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 NUPR1O60356 82 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 ZG16O60844 167 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 ARL6IP5O75915 188 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 TIMP1P01033 207 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 CRYAAP02489 173 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 IFNW1P05000 195 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 OR9G9P0C7N8 305 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 ZNF43P17038 809 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 CDK2P24941 298 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 EDNRAP25101 427 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 IL3RAP26951 378 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 CRYBB3P26998 211 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 BLVRBP30043 206 aaPredicted RBP2.67□□□□□ -1.98
VPS35-208ENST00000568612 APOBEC1P41238 236 aaKnown RBP2.67□□□□□ -1.98
VPS35-208ENST00000568612 CCR2P41597 374 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 REG1BP48304 166 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 FABP6P51161 128 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 STC1P52823 247 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 DSCR9P59020 149 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 MRPS6P82932 125 aaKnown RBP2.67□□□□□ -1.98
VPS35-208ENST00000568612 Q0VFX4 171 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 GGTLC2Q14390 218 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 INSL4Q14641 139 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 ZNF791Q3KP31 576 aaPredicted RBP2.67□□□□□ -1.98
VPS35-208ENST00000568612 FAM174BQ3ZCQ3 159 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 ACSF3Q4G176 576 aaPredicted RBP2.67□□□□□ -1.98
VPS35-208ENST00000568612 SLC25A34Q6PIV7 304 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 Q6ZS92 163 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 SHISA6Q6ZSJ9 500 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 PPP1R27Q86WC6 154 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 OOSP2Q86WS3 158 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 SLC22A18ASQ8N1D0 253 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 C10orf111Q8N326 155 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 KIR3DL3Q8N743 410 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 TMEM229BQ8NBD8 167 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 APCDD1LQ8NCL9 501 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 SMRP1Q8NCR6 262 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 OR5H2Q8NGV7 314 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 OR6K6Q8NGW6 343 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 OR2T10Q8NGZ9 312 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 OR8S1Q8NH09 359 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 CLDND2Q8NHS1 167 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 ZNF563Q8TA94 476 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 FAM213BQ8TBF2 198 aa2.67□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms