RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, human

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-223	ENST00000568488	CMSS1	Q9BQ75	279 aa	Known RBP	11.8	□□□□□ -0.52
CLK3-223	ENST00000568488	SLC2A9	Q9NRM0	540 aa		11.8	□□□□□ -0.52
CLK3-223	ENST00000568488	LINC00473	A8K010	186 aa		11.79	□□□□□ -0.52
CLK3-223	ENST00000568488		E7EUB6	86 aa		11.79	□□□□□ -0.52
CLK3-223	ENST00000568488		P0DMU3	169 aa		11.79	□□□□□ -0.52
CLK3-223	ENST00000568488	FAM231A	P0DMU4	169 aa		11.79	□□□□□ -0.52
CLK3-223	ENST00000568488	FAM231C	P0DMU5	169 aa		11.79	□□□□□ -0.52
CLK3-223	ENST00000568488	AREG	P15514	252 aa		11.79	□□□□□ -0.52
CLK3-223	ENST00000568488	HIST1H1B	P16401	226 aa	Known RBP	11.79	□□□□□ -0.52
CLK3-223	ENST00000568488	MYL12A	P19105	171 aa		11.79	□□□□□ -0.52
CLK3-223	ENST00000568488	PSMB6	P28072	239 aa		11.79	□□□□□ -0.52
CLK3-223	ENST00000568488	TFPI2	P48307	235 aa		11.79	□□□□□ -0.52
CLK3-223	ENST00000568488	IGSF11	Q5DX21	431 aa		11.79	□□□□□ -0.52
CLK3-223	ENST00000568488	VKORC1L1	Q8N0U8	176 aa		11.79	□□□□□ -0.52
CLK3-223	ENST00000568488	OR10J5	Q8NHC4	309 aa		11.79	□□□□□ -0.52
CLK3-223	ENST00000568488	OR51E2	Q9H255	320 aa		11.79	□□□□□ -0.52
CLK3-223	ENST00000568488	FCGR3B	O75015	233 aa		11.78	□□□□□ -0.52
CLK3-223	ENST00000568488	CRYGC	P07315	174 aa		11.78	□□□□□ -0.52
CLK3-223	ENST00000568488	PSMD7	P51665	324 aa		11.78	□□□□□ -0.52
CLK3-223	ENST00000568488	LGALS9B	Q3B8N2	356 aa		11.78	□□□□□ -0.52
CLK3-223	ENST00000568488	C1orf146	Q5VVC0	180 aa		11.78	□□□□□ -0.52
CLK3-223	ENST00000568488	OR4A4P	Q8NGN8	299 aa		11.78	□□□□□ -0.52
CLK3-223	ENST00000568488	APH1B	Q8WW43	257 aa		11.78	□□□□□ -0.52
CLK3-223	ENST00000568488	C20orf24	Q9BUV8	137 aa		11.78	□□□□□ -0.52
CLK3-223	ENST00000568488	RNF126	Q9BV68	326 aa		11.78	□□□□□ -0.52
CLK3-223	ENST00000568488	LPAR5	Q9H1C0	372 aa		11.78	□□□□□ -0.52
CLK3-223	ENST00000568488	HRH4	Q9H3N8	390 aa		11.78	□□□□□ -0.52
CLK3-223	ENST00000568488	IGLV2-18	A0A075B6J9	118 aa		11.77	□□□□□ -0.53
CLK3-223	ENST00000568488	TMEM14DP	A8MWL7	114 aa		11.77	□□□□□ -0.53
CLK3-223	ENST00000568488	RAB27B	O00194	218 aa		11.77	□□□□□ -0.53
CLK3-223	ENST00000568488	FABP7	O15540	132 aa		11.77	□□□□□ -0.53
CLK3-223	ENST00000568488	ZNF207	O43670	478 aa	Known RBP	11.77	□□□□□ -0.53
CLK3-223	ENST00000568488	OR2B11	Q5JQS5	317 aa		11.77	□□□□□ -0.53
CLK3-223	ENST00000568488	SSX9	Q7RTT3	188 aa		11.77	□□□□□ -0.53
CLK3-223	ENST00000568488	TMEM190	Q8WZ59	177 aa		11.77	□□□□□ -0.53
CLK3-223	ENST00000568488	ARHGAP5-AS1	Q96IT6	56 aa		11.77	□□□□□ -0.53
CLK3-223	ENST00000568488	URM1	Q9BTM9	101 aa	Known RBP	11.77	□□□□□ -0.53
CLK3-223	ENST00000568488	ZNF436	Q9C0F3	470 aa	Predicted RBP	11.77	□□□□□ -0.53
CLK3-223	ENST00000568488	DAZ1	Q9NQZ3	744 aa	Known RBP	11.77	□□□□□ -0.53
CLK3-223	ENST00000568488	IGKV3-7	A0A075B6H7	116 aa		11.76	□□□□□ -0.53
CLK3-223	ENST00000568488	IGLV11-55	A0A075B6I3	123 aa		11.76	□□□□□ -0.53
CLK3-223	ENST00000568488	IGHV3OR16-8	A0A075B7F1	116 aa		11.76	□□□□□ -0.53
CLK3-223	ENST00000568488	LOC100130705	A0A1B0GUX0	176 aa		11.76	□□□□□ -0.53
CLK3-223	ENST00000568488		J3QRK9	145 aa		11.76	□□□□□ -0.53
CLK3-223	ENST00000568488	ZNF735	P0CB33	412 aa		11.76	□□□□□ -0.53
CLK3-223	ENST00000568488	CMC4	P56277	68 aa	Predicted RBP	11.76	□□□□□ -0.53
CLK3-223	ENST00000568488	QRFP	P83859	136 aa		11.76	□□□□□ -0.53
CLK3-223	ENST00000568488	C1orf100	Q5SVJ3	147 aa		11.76	□□□□□ -0.53
CLK3-223	ENST00000568488	TTC23	Q5W5X9	447 aa		11.76	□□□□□ -0.53
CLK3-223	ENST00000568488		Q8NAQ8	132 aa		11.76	□□□□□ -0.53
CLK3-223	ENST00000568488	ZNF502	Q8TBZ5	544 aa		11.76	□□□□□ -0.53
CLK3-223	ENST00000568488	CHRDL1	Q9BU40	450 aa		11.76	□□□□□ -0.53
CLK3-223	ENST00000568488	PECR	Q9BY49	303 aa		11.76	□□□□□ -0.53
CLK3-223	ENST00000568488	HSF4	Q9ULV5	492 aa		11.76	□□□□□ -0.53
CLK3-223	ENST00000568488	IGHV4-28	A0A0C4DH34	117 aa		11.75	□□□□□ -0.53
CLK3-223	ENST00000568488		A0A1B0GW64	132 aa		11.75	□□□□□ -0.53
CLK3-223	ENST00000568488	C16orf90	A8MZG2	172 aa		11.75	□□□□□ -0.53
CLK3-223	ENST00000568488	TGOLN2	O43493	480 aa		11.75	□□□□□ -0.53
CLK3-223	ENST00000568488	CDK2AP2	O75956	126 aa		11.75	□□□□□ -0.53
CLK3-223	ENST00000568488	IFNA10	P01566	189 aa		11.75	□□□□□ -0.53
CLK3-223	ENST00000568488	RBMY1A1	P0DJD3	496 aa	Known RBP	11.75	□□□□□ -0.53
CLK3-223	ENST00000568488	RBMY1C	P0DJD4	496 aa		11.75	□□□□□ -0.53
CLK3-223	ENST00000568488	CEL	P19835	753 aa		11.75	□□□□□ -0.53
CLK3-223	ENST00000568488	CRHBP	P24387	322 aa		11.75	□□□□□ -0.53
CLK3-223	ENST00000568488	MAPK3	P27361	379 aa	Predicted RBP	11.75	□□□□□ -0.53
CLK3-223	ENST00000568488	TMEM50B	P56557	158 aa		11.75	□□□□□ -0.53
CLK3-223	ENST00000568488	MRPS15	P82914	257 aa	Known RBP	11.75	□□□□□ -0.53
CLK3-223	ENST00000568488	RBMY1F	Q15415	496 aa	Known RBP	11.75	□□□□□ -0.53
CLK3-223	ENST00000568488	SOHLH1	Q5JUK2	328 aa		11.75	□□□□□ -0.53
CLK3-223	ENST00000568488	CBR4	Q8N4T8	237 aa		11.75	□□□□□ -0.53
CLK3-223	ENST00000568488	OR2A7	Q96R45	310 aa		11.75	□□□□□ -0.53
CLK3-223	ENST00000568488	GINS4	Q9BRT9	223 aa		11.75	□□□□□ -0.53
CLK3-223	ENST00000568488	DIMT1	Q9UNQ2	313 aa	Known RBP	11.75	□□□□□ -0.53
CLK3-223	ENST00000568488	TRBV6-7	A0A0A0MS04	114 aa		11.74	□□□□□ -0.53
CLK3-223	ENST00000568488	IRGM	A1A4Y4	181 aa		11.74	□□□□□ -0.53
CLK3-223	ENST00000568488	MRPS14	O60783	128 aa	Known RBP	11.74	□□□□□ -0.53
CLK3-223	ENST00000568488	KBTBD11	O94819	623 aa		11.74	□□□□□ -0.53
CLK3-223	ENST00000568488	ARFRP1	Q13795	201 aa		11.74	□□□□□ -0.53
CLK3-223	ENST00000568488	INSL4	Q14641	139 aa		11.74	□□□□□ -0.53
CLK3-223	ENST00000568488	RBM48	Q5RL73	367 aa	Known RBP	11.74	□□□□□ -0.53
CLK3-223	ENST00000568488	FAM89B	Q8N5H3	189 aa		11.74	□□□□□ -0.53
CLK3-223	ENST00000568488	VSTM2A	Q8TAG5	236 aa		11.74	□□□□□ -0.53
CLK3-223	ENST00000568488	APOB	P04114	4563 aa	Known RBP	11.73	□□□□□ -0.53
CLK3-223	ENST00000568488	DEFB131B	A0A096LNP1	70 aa		11.73	□□□□□ -0.53
CLK3-223	ENST00000568488	OR2T8	A6NH00	312 aa		11.73	□□□□□ -0.53
CLK3-223	ENST00000568488	WBP4	O75554	376 aa	Known RBP	11.73	□□□□□ -0.53
CLK3-223	ENST00000568488	BPNT1	O95861	308 aa		11.73	□□□□□ -0.53
CLK3-223	ENST00000568488	MAS1L	P35410	378 aa		11.73	□□□□□ -0.53
CLK3-223	ENST00000568488	TAS2R43	P59537	309 aa		11.73	□□□□□ -0.53
CLK3-223	ENST00000568488	P2RY14	Q15391	338 aa		11.73	□□□□□ -0.53
CLK3-223	ENST00000568488	KLK9	Q2XQG4	91 aa		11.73	□□□□□ -0.53
CLK3-223	ENST00000568488	KCTD9	Q7L273	389 aa		11.73	□□□□□ -0.53
CLK3-223	ENST00000568488	LRRTM1	Q86UE6	522 aa		11.73	□□□□□ -0.53
CLK3-223	ENST00000568488	UBE2DNL	Q8IWF7	75 aa		11.73	□□□□□ -0.53
CLK3-223	ENST00000568488		Q8N1X5	172 aa		11.73	□□□□□ -0.53
CLK3-223	ENST00000568488	TMEM167A	Q8TBQ9	72 aa		11.73	□□□□□ -0.53
CLK3-223	ENST00000568488	PYDC1	Q8WXC3	89 aa		11.73	□□□□□ -0.53
CLK3-223	ENST00000568488	MAFIP	Q8WZ33	124 aa		11.73	□□□□□ -0.53
CLK3-223	ENST00000568488	TMEM80	Q96HE8	168 aa		11.73	□□□□□ -0.53
CLK3-223	ENST00000568488	CABLES2	Q9BTV7	478 aa		11.73	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms