RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 NPVFQ9HCQ7 196 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 SLC35D1Q9NTN3 355 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 TP53TG5Q9Y2B4 290 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 LSM4Q9Y4Z0 139 aaKnown RBP5.14□□□□□ -1.59
CLN3-223ENST00000566472 PXMP4Q9Y6I8 212 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 ARL2-SNX15V9GYD0 113 aa5.14□□□□□ -1.59
CLN3-223ENST00000566472 DNAJC13O75165 2243 aa5.13□□□□□ -1.59
CLN3-223ENST00000566472 PPIAL4EA0A075B759 164 aa5.13□□□□□ -1.59
CLN3-223ENST00000566472 TGIF2-C20orf24A0A0A6YYL0 155 aa5.13□□□□□ -1.59
CLN3-223ENST00000566472 A0A1W2PPE3 182 aa5.13□□□□□ -1.59
CLN3-223ENST00000566472 A0A1W2PPV4 95 aa5.13□□□□□ -1.59
CLN3-223ENST00000566472 DPRXA6NFQ7 191 aa5.13□□□□□ -1.59
CLN3-223ENST00000566472 PPIAL4DF5H284 164 aa5.13□□□□□ -1.59
CLN3-223ENST00000566472 TMEM178BH3BS89 294 aa5.13□□□□□ -1.59
CLN3-223ENST00000566472 RRHO14718 337 aa5.13□□□□□ -1.59
CLN3-223ENST00000566472 PPP1R2P9O14990 202 aa5.13□□□□□ -1.59
CLN3-223ENST00000566472 PAGE4O60829 102 aa5.13□□□□□ -1.59
CLN3-223ENST00000566472 YIF1AO95070 293 aa5.13□□□□□ -1.59
CLN3-223ENST00000566472 FSTL3O95633 263 aa5.13□□□□□ -1.59
CLN3-223ENST00000566472 CXorf1O96002 111 aa5.13□□□□□ -1.59
CLN3-223ENST00000566472 MT-CO2P00403 227 aa5.13□□□□□ -1.59
CLN3-223ENST00000566472 GYPAP02724 150 aa5.13□□□□□ -1.59
CLN3-223ENST00000566472 THBDP07204 575 aa5.13□□□□□ -1.59
CLN3-223ENST00000566472 OR4A8P0C604 315 aa5.13□□□□□ -1.59
CLN3-223ENST00000566472 PPIAL4FP0DN26 164 aa5.13□□□□□ -1.59
CLN3-223ENST00000566472 SELLP14151 372 aa5.13□□□□□ -1.59
CLN3-223ENST00000566472 CD99P14209 185 aa5.13□□□□□ -1.59
CLN3-223ENST00000566472 SRP14P37108 136 aaKnown RBP5.13□□□□□ -1.59
CLN3-223ENST00000566472 RPL29P47914 159 aaKnown RBP5.13□□□□□ -1.59
CLN3-223ENST00000566472 LINC00205P59089 165 aa5.13□□□□□ -1.59
CLN3-223ENST00000566472 ERVFRD-1P60508 538 aa5.13□□□□□ -1.59
CLN3-223ENST00000566472 RPL23P62829 140 aaKnown RBP5.13□□□□□ -1.59
CLN3-223ENST00000566472 HNF4GQ14541 408 aa5.13□□□□□ -1.59
CLN3-223ENST00000566472 TMEM177Q53S58 311 aa5.13□□□□□ -1.59
CLN3-223ENST00000566472 SPINK9Q5DT21 86 aa5.13□□□□□ -1.59
CLN3-223ENST00000566472 FAM201AQ5SY85 155 aa5.13□□□□□ -1.59
CLN3-223ENST00000566472 TEPPQ6URK8 271 aa5.13□□□□□ -1.59
CLN3-223ENST00000566472 FAM216BQ8N7L0 139 aa5.13□□□□□ -1.59
CLN3-223ENST00000566472 OR1L8Q8NGR8 309 aa5.13□□□□□ -1.59
CLN3-223ENST00000566472 OR4F5Q8NH21 305 aa5.13□□□□□ -1.59
CLN3-223ENST00000566472 OR5B3Q8NH48 314 aa5.13□□□□□ -1.59
CLN3-223ENST00000566472 ZCCHC14Q8WYQ9 949 aaKnown RBP5.13□□□□□ -1.59
CLN3-223ENST00000566472 SLC35E1Q96K37 410 aa5.13□□□□□ -1.59
CLN3-223ENST00000566472 ZNF714Q96N38 554 aa5.13□□□□□ -1.59
CLN3-223ENST00000566472 OR5B12Q96R08 314 aa5.13□□□□□ -1.59
CLN3-223ENST00000566472 OR4F4Q96R69 305 aa5.13□□□□□ -1.59
CLN3-223ENST00000566472 MGST2Q99735 147 aa5.13□□□□□ -1.59
CLN3-223ENST00000566472 TMEM204Q9BSN7 226 aa5.13□□□□□ -1.59
CLN3-223ENST00000566472 MS4A5Q9H3V2 200 aa5.13□□□□□ -1.59
CLN3-223ENST00000566472 SRD5A3Q9H8P0 318 aa5.13□□□□□ -1.59
CLN3-223ENST00000566472 PLEKHA3Q9HB20 300 aa5.13□□□□□ -1.59
CLN3-223ENST00000566472 DOK5Q9P104 306 aa5.13□□□□□ -1.59
CLN3-223ENST00000566472 KAAG1Q9UBP8 84 aa5.13□□□□□ -1.59
CLN3-223ENST00000566472 SLC25A10Q9UBX3 287 aaPredicted RBP5.13□□□□□ -1.59
CLN3-223ENST00000566472 PPIAL4AQ9Y536 164 aa5.13□□□□□ -1.59
CLN3-223ENST00000566472 OR51B2Q9Y5P1 312 aa5.13□□□□□ -1.59
CLN3-223ENST00000566472 A0A087X0M5 115 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 TRAV3A0A0B4J244 114 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 A0A1B0GX30 115 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 A0A1W2PN81 502 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 C11orf94C9JXX5 98 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 H7BYZ3 331 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 K7ENP7 123 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 TNFRSF13BO14836 293 aaPredicted RBP5.12□□□□□ -1.59
CLN3-223ENST00000566472 NDUFB3O43676 98 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 CLN5O75503 358 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 TYMSP04818 313 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 PFN1P07737 140 aaKnown RBP5.12□□□□□ -1.59
CLN3-223ENST00000566472 CT45A6P0DMU7 189 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 CT45A5P0DMU8 189 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 CT45A7P0DMV0 189 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 NDUFB7P17568 137 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 IL3RAP26951 378 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 CHRNA7P36544 502 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 CDX1P47902 265 aaPredicted RBP5.12□□□□□ -1.59
CLN3-223ENST00000566472 ZNF137PP52743 207 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 B2MP61769 119 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 RHOBP62745 196 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 RPL31P62899 125 aaKnown RBP5.12□□□□□ -1.59
CLN3-223ENST00000566472 PRR20EP86478 221 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 PRR20CP86479 221 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 PRR20DP86480 221 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 PRR20BP86481 221 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 PRR20AP86496 221 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 BSPH1Q075Z2 132 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 EFNB3Q15768 340 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 ADIRFQ15847 76 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 TBR1Q16650 682 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 C2orf83Q53S99 150 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 LRRC10Q5BKY1 277 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 DNLZQ5SXM8 178 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 NCMAPQ5T1S8 102 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 ZNF343Q6P1L6 599 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 DUX4L9Q6RFH8 374 aaPredicted RBP5.12□□□□□ -1.59
CLN3-223ENST00000566472 C1orf229Q6ZS94 237 aaPredicted RBP5.12□□□□□ -1.59
CLN3-223ENST00000566472 C22orf34Q6ZV56 151 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 C16orf82Q7Z2V1 217 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 TMEM144Q7Z5S9 345 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 PDPNQ86YL7 162 aa5.12□□□□□ -1.59
CLN3-223ENST00000566472 SPACA3Q8IXA5 215 aa5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms