RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 BTCP35070 178 aa7.15□□□□□ -1.26
VPS35-206ENST00000565228 CHRNA7P36544 502 aa7.15□□□□□ -1.26
VPS35-206ENST00000565228 LPAR6P43657 344 aa7.15□□□□□ -1.26
VPS35-206ENST00000565228 TSPAN5P62079 268 aa7.15□□□□□ -1.26
VPS35-206ENST00000565228 SSBP1Q04837 148 aaKnown RBP7.15□□□□□ -1.26
VPS35-206ENST00000565228 FOXE3Q13461 319 aa7.15□□□□□ -1.26
VPS35-206ENST00000565228 PLGLAQ15195 96 aa7.15□□□□□ -1.26
VPS35-206ENST00000565228 POU2AF1Q16633 256 aa7.15□□□□□ -1.26
VPS35-206ENST00000565228 SP6Q3SY56 376 aa7.15□□□□□ -1.26
VPS35-206ENST00000565228 OR4A47Q6IF82 309 aa7.15□□□□□ -1.26
VPS35-206ENST00000565228 UNQ5815/PRO19632Q6UWF5 114 aa7.15□□□□□ -1.26
VPS35-206ENST00000565228 ZNF491Q8N8L2 437 aa7.15□□□□□ -1.26
VPS35-206ENST00000565228 ADAD2Q8NCV1 583 aaKnown RBP7.15□□□□□ -1.26
VPS35-206ENST00000565228 OR5T1Q8NG75 326 aa7.15□□□□□ -1.26
VPS35-206ENST00000565228 OR51S1Q8NGJ8 323 aa7.15□□□□□ -1.26
VPS35-206ENST00000565228 OR4S2Q8NH73 311 aa7.15□□□□□ -1.26
VPS35-206ENST00000565228 TERB2Q8NHR7 220 aa7.15□□□□□ -1.26
VPS35-206ENST00000565228 LHFPL5Q8TAF8 219 aa7.15□□□□□ -1.26
VPS35-206ENST00000565228 MS4A10Q96PG2 267 aa7.15□□□□□ -1.26
VPS35-206ENST00000565228 SLC2A9Q9NRM0 540 aa7.15□□□□□ -1.26
VPS35-206ENST00000565228 GPR132Q9UNW8 380 aa7.15□□□□□ -1.26
VPS35-206ENST00000565228 NSG2Q9Y328 171 aa7.15□□□□□ -1.26
VPS35-206ENST00000565228 TSSC4Q9Y5U2 329 aaPredicted RBP7.15□□□□□ -1.26
VPS35-206ENST00000565228 G3V4G9 280 aa7.14□□□□□ -1.27
VPS35-206ENST00000565228 I3L521 148 aa7.14□□□□□ -1.27
VPS35-206ENST00000565228 M0QZ24 198 aa7.14□□□□□ -1.27
VPS35-206ENST00000565228 UPK2O00526 184 aa7.14□□□□□ -1.27
VPS35-206ENST00000565228 MPPED1O15442 326 aa7.14□□□□□ -1.27
VPS35-206ENST00000565228 RBFOX2O43251 390 aaKnown RBP eCLIP7.14□□□□□ -1.27
VPS35-206ENST00000565228 OR2A4O95047 310 aa7.14□□□□□ -1.27
VPS35-206ENST00000565228 IGKV1-5P01602 117 aa7.14□□□□□ -1.27
VPS35-206ENST00000565228 ELANEP08246 267 aa7.14□□□□□ -1.27
VPS35-206ENST00000565228 AREGP15514 252 aa7.14□□□□□ -1.27
VPS35-206ENST00000565228 TBPP20226 339 aa7.14□□□□□ -1.27
VPS35-206ENST00000565228 VDAC1P21796 283 aa7.14□□□□□ -1.27
VPS35-206ENST00000565228 F2RP25116 425 aa7.14□□□□□ -1.27
VPS35-206ENST00000565228 G6PCP35575 357 aa7.14□□□□□ -1.27
VPS35-206ENST00000565228 RAB9AP51151 201 aa7.14□□□□□ -1.27
VPS35-206ENST00000565228 PIGPP57054 158 aa7.14□□□□□ -1.27
VPS35-206ENST00000565228 RND3P61587 244 aa7.14□□□□□ -1.27
VPS35-206ENST00000565228 MRPS10P82664 201 aaKnown RBP7.14□□□□□ -1.27
VPS35-206ENST00000565228 TNXAQ16473 311 aa7.14□□□□□ -1.27
VPS35-206ENST00000565228 C2orf68Q2NKX9 166 aa7.14□□□□□ -1.27
VPS35-206ENST00000565228 SCGB2B2Q4G0G5 96 aa7.14□□□□□ -1.27
VPS35-206ENST00000565228 AKIRIN2Q53H80 203 aa7.14□□□□□ -1.27
VPS35-206ENST00000565228 ACTBL2Q562R1 376 aa7.14□□□□□ -1.27
VPS35-206ENST00000565228 PYDC2Q56P42 97 aa7.14□□□□□ -1.27
VPS35-206ENST00000565228 C11orf87Q6NUJ2 197 aa7.14□□□□□ -1.27
VPS35-206ENST00000565228 TEX38Q6PEX7 206 aa7.14□□□□□ -1.27
VPS35-206ENST00000565228 C1QL4Q86Z23 238 aa7.14□□□□□ -1.27
VPS35-206ENST00000565228 Q8N402 240 aa7.14□□□□□ -1.27
VPS35-206ENST00000565228 ARRDC1Q8N5I2 433 aa7.14□□□□□ -1.27
VPS35-206ENST00000565228 LINC00482Q8N8I6 264 aa7.14□□□□□ -1.27
VPS35-206ENST00000565228 OR4X2Q8NGF9 303 aa7.14□□□□□ -1.27
VPS35-206ENST00000565228 SRSF12Q8WXF0 261 aaKnown RBP7.14□□□□□ -1.27
VPS35-206ENST00000565228 R3HDM4Q96D70 268 aa7.14□□□□□ -1.27
VPS35-206ENST00000565228 SEC22AQ96IW7 307 aa7.14□□□□□ -1.27
VPS35-206ENST00000565228 RHOVQ96L33 236 aa7.14□□□□□ -1.27
VPS35-206ENST00000565228 OR5B12Q96R08 314 aa7.14□□□□□ -1.27
VPS35-206ENST00000565228 OR2A7Q96R45 310 aa7.14□□□□□ -1.27
VPS35-206ENST00000565228 P2RX4Q99571 388 aa7.14□□□□□ -1.27
VPS35-206ENST00000565228 AKIP1Q9NQ31 210 aa7.14□□□□□ -1.27
VPS35-206ENST00000565228 TMEM140Q9NV12 185 aa7.14□□□□□ -1.27
VPS35-206ENST00000565228 BET1LQ9NYM9 111 aa7.14□□□□□ -1.27
VPS35-206ENST00000565228 PRELID3BQ9Y3B1 194 aa7.14□□□□□ -1.27
VPS35-206ENST00000565228 HPRT1P00492 218 aa7.13□□□□□ -1.27
VPS35-206ENST00000565228 TRBV12-3P01733 135 aa7.13□□□□□ -1.27
VPS35-206ENST00000565228 AKAIN1P0CW23 69 aa7.13□□□□□ -1.27
VPS35-206ENST00000565228 CDX1P47902 265 aaPredicted RBP7.13□□□□□ -1.27
VPS35-206ENST00000565228 TAS2R31P59538 309 aa7.13□□□□□ -1.27
VPS35-206ENST00000565228 SUPT4H1P63272 117 aaKnown RBP7.13□□□□□ -1.27
VPS35-206ENST00000565228 VMA21Q3ZAQ7 101 aa7.13□□□□□ -1.27
VPS35-206ENST00000565228 KHDC1LQ5JSQ8 128 aa7.13□□□□□ -1.27
VPS35-206ENST00000565228 Q6ZRM9 215 aa7.13□□□□□ -1.27
VPS35-206ENST00000565228 MRPL41Q8IXM3 137 aaKnown RBP7.13□□□□□ -1.27
VPS35-206ENST00000565228 SLC38A6Q8IZM9 456 aa7.13□□□□□ -1.27
VPS35-206ENST00000565228 KLHL30-AS1Q8NEE0 82 aa7.13□□□□□ -1.27
VPS35-206ENST00000565228 WFDC9Q8NEX5 89 aa7.13□□□□□ -1.27
VPS35-206ENST00000565228 C15orf40Q8WUR7 153 aa7.13□□□□□ -1.27
VPS35-206ENST00000565228 PLEKHA2Q9HB19 425 aa7.13□□□□□ -1.27
VPS35-206ENST00000565228 SLC2A8Q9NY64 477 aa7.13□□□□□ -1.27
VPS35-206ENST00000565228 NDUFA13Q9P0J0 144 aa7.13□□□□□ -1.27
VPS35-206ENST00000565228 FOXA2Q9Y261 457 aaPredicted RBP7.13□□□□□ -1.27
VPS35-206ENST00000565228 TEX50A0A1B0GTY4 177 aa7.12□□□□□ -1.27
VPS35-206ENST00000565228 IGLC7A0M8Q6 106 aa7.12□□□□□ -1.27
VPS35-206ENST00000565228 MARCH11A6NNE9 402 aa7.12□□□□□ -1.27
VPS35-206ENST00000565228 PLA2G10O15496 165 aa7.12□□□□□ -1.27
VPS35-206ENST00000565228 KRASP01116 189 aa7.12□□□□□ -1.27
VPS35-206ENST00000565228 IGHV3-11P01762 117 aa7.12□□□□□ -1.27
VPS35-206ENST00000565228 REG1AP05451 166 aa7.12□□□□□ -1.27
VPS35-206ENST00000565228 CTSDP07339 412 aaPredicted RBP7.12□□□□□ -1.27
VPS35-206ENST00000565228 PF4V1P10720 104 aa7.12□□□□□ -1.27
VPS35-206ENST00000565228 PGAM2P15259 253 aa7.12□□□□□ -1.27
VPS35-206ENST00000565228 PTBP1P26599 531 aaKnown RBP eCLIP7.12□□□□□ -1.27
VPS35-206ENST00000565228 KIR2DS2P43631 304 aa7.12□□□□□ -1.27
VPS35-206ENST00000565228 MFAP2P55001 183 aa7.12□□□□□ -1.27
VPS35-206ENST00000565228 OR2B8PP59922 312 aa7.12□□□□□ -1.27
VPS35-206ENST00000565228 SLC35B1P78383 322 aa7.12□□□□□ -1.27
VPS35-206ENST00000565228 IFITM3Q01628 133 aa7.12□□□□□ -1.27
VPS35-206ENST00000565228 CATR1Q13166 79 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms