RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 RHOGP84095 191 aa11.33□□□□□ -0.6
CLN3-213ENST00000565047 UBE2NLQ5JXB2 153 aa11.33□□□□□ -0.6
CLN3-213ENST00000565047 C19orf35Q6ZS72 473 aa11.33□□□□□ -0.6
CLN3-213ENST00000565047 SECTM1Q8WVN6 248 aa11.33□□□□□ -0.6
CLN3-213ENST00000565047 SLC25A46Q96AG3 418 aa11.33□□□□□ -0.6
CLN3-213ENST00000565047 FANCD2OSQ96PS1 177 aa11.33□□□□□ -0.6
CLN3-213ENST00000565047 OR4C12Q96R67 309 aa11.33□□□□□ -0.6
CLN3-213ENST00000565047 PHB2Q99623 299 aa11.33□□□□□ -0.6
CLN3-213ENST00000565047 SPIN2AQ99865 258 aa11.33□□□□□ -0.6
CLN3-213ENST00000565047 SPIN2BQ9BPZ2 258 aa11.33□□□□□ -0.6
CLN3-213ENST00000565047 SLC2A9Q9NRM0 540 aa11.33□□□□□ -0.6
CLN3-213ENST00000565047 U3KQK5 164 aa11.33□□□□□ -0.6
CLN3-213ENST00000565047 STAB2Q8WWQ8 2551 aa11.32□□□□□ -0.6
CLN3-213ENST00000565047 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.32□□□□□ -0.6
CLN3-213ENST00000565047 MEIS3P1A6NDR6 274 aa11.32□□□□□ -0.6
CLN3-213ENST00000565047 FAM223BA6NKX1 122 aa11.32□□□□□ -0.6
CLN3-213ENST00000565047 NPIPB5A8MRT5 1133 aa11.32□□□□□ -0.6
CLN3-213ENST00000565047 BMPR1BO00238 502 aa11.32□□□□□ -0.6
CLN3-213ENST00000565047 CREBL2O60519 120 aaPredicted RBP11.32□□□□□ -0.6
CLN3-213ENST00000565047 MYOD1P15172 320 aa11.32□□□□□ -0.6
CLN3-213ENST00000565047 GNRHRP30968 328 aa11.32□□□□□ -0.6
CLN3-213ENST00000565047 TAS2R20P59543 309 aa11.32□□□□□ -0.6
CLN3-213ENST00000565047 POU2AF1Q16633 256 aa11.32□□□□□ -0.6
CLN3-213ENST00000565047 ADAMTSL5Q6ZMM2 481 aa11.32□□□□□ -0.6
CLN3-213ENST00000565047 ZNF818PQ6ZRF7 136 aa11.32□□□□□ -0.6
CLN3-213ENST00000565047 LYSMD2Q8IV50 215 aa11.32□□□□□ -0.6
CLN3-213ENST00000565047 FAM223AQ8IWN6 122 aa11.32□□□□□ -0.6
CLN3-213ENST00000565047 NECAP1Q8NC96 275 aa11.32□□□□□ -0.6
CLN3-213ENST00000565047 VSTM2AQ8TAG5 236 aa11.32□□□□□ -0.6
CLN3-213ENST00000565047 S100A16Q96FQ6 103 aaKnown RBP11.32□□□□□ -0.6
CLN3-213ENST00000565047 ELOVL1Q9BW60 279 aa11.32□□□□□ -0.6
CLN3-213ENST00000565047 A8MZ25 164 aa11.31□□□□□ -0.6
CLN3-213ENST00000565047 FRMD6-AS1P0C7T7 363 aa11.31□□□□□ -0.6
CLN3-213ENST00000565047 MAS1LP35410 378 aa11.31□□□□□ -0.6
CLN3-213ENST00000565047 KIR2DS2P43631 304 aa11.31□□□□□ -0.6
CLN3-213ENST00000565047 NCS1P62166 190 aa11.31□□□□□ -0.6
CLN3-213ENST00000565047 OR4A47Q6IF82 309 aa11.31□□□□□ -0.6
CLN3-213ENST00000565047 SPAG16Q8N0X2 631 aa11.31□□□□□ -0.6
CLN3-213ENST00000565047 SAMD12Q8N8I0 201 aa11.31□□□□□ -0.6
CLN3-213ENST00000565047 KCTD12Q96CX2 325 aaKnown RBP11.31□□□□□ -0.6
CLN3-213ENST00000565047 FUNDC2Q9BWH2 189 aa11.31□□□□□ -0.6
CLN3-213ENST00000565047 SLC5A7Q9GZV3 580 aa11.31□□□□□ -0.6
CLN3-213ENST00000565047 BET1LQ9NYM9 111 aa11.31□□□□□ -0.6
CLN3-213ENST00000565047 ZNF257Q9Y2Q1 563 aa11.31□□□□□ -0.6
CLN3-213ENST00000565047 SACSQ9NZJ4 4579 aa11.31□□□□□ -0.6
CLN3-213ENST00000565047 NBEAL2Q6ZNJ1 2754 aa11.3□□□□□ -0.6
CLN3-213ENST00000565047 SULT1C2O00338 296 aa11.3□□□□□ -0.6
CLN3-213ENST00000565047 ACTL6BO94805 426 aa11.3□□□□□ -0.6
CLN3-213ENST00000565047 HRASP01112 189 aa11.3□□□□□ -0.6
CLN3-213ENST00000565047 EIF4EP06730 217 aaKnown RBP11.3□□□□□ -0.6
CLN3-213ENST00000565047 AREGP15514 252 aa11.3□□□□□ -0.6
CLN3-213ENST00000565047 CTRB1P17538 263 aa11.3□□□□□ -0.6
CLN3-213ENST00000565047 RPL27AP46776 148 aaKnown RBP11.3□□□□□ -0.6
CLN3-213ENST00000565047 RFX2P48378 723 aa11.3□□□□□ -0.6
CLN3-213ENST00000565047 ATP5G2Q06055 141 aa11.3□□□□□ -0.6
CLN3-213ENST00000565047 CTRB2Q6GPI1 263 aa11.3□□□□□ -0.6
CLN3-213ENST00000565047 OR4A5Q8NH83 315 aa11.3□□□□□ -0.6
CLN3-213ENST00000565047 C19orf73Q9NVV2 129 aa11.3□□□□□ -0.6
CLN3-213ENST00000565047 TRAV3A0A0B4J244 114 aa11.29□□□□□ -0.6
CLN3-213ENST00000565047 MPPED1O15442 326 aa11.29□□□□□ -0.6
CLN3-213ENST00000565047 OR2J3O76001 311 aa11.29□□□□□ -0.6
CLN3-213ENST00000565047 NDUFB8O95169 186 aa11.29□□□□□ -0.6
CLN3-213ENST00000565047 HPRT1P00492 218 aa11.29□□□□□ -0.6
CLN3-213ENST00000565047 FGF2P09038 288 aa11.29□□□□□ -0.6
CLN3-213ENST00000565047 HLA-GP17693 338 aa11.29□□□□□ -0.6
CLN3-213ENST00000565047 PSMB6P28072 239 aa11.29□□□□□ -0.6
CLN3-213ENST00000565047 TAS2R31P59538 309 aa11.29□□□□□ -0.6
CLN3-213ENST00000565047 FXYD4P59646 89 aa11.29□□□□□ -0.6
CLN3-213ENST00000565047 OR2B8PP59922 312 aa11.29□□□□□ -0.6
CLN3-213ENST00000565047 RPL8P62917 257 aaKnown RBP11.29□□□□□ -0.6
CLN3-213ENST00000565047 EXOSC2Q13868 293 aaKnown RBP11.29□□□□□ -0.6
CLN3-213ENST00000565047 C15orf32Q32M92 178 aa11.29□□□□□ -0.6
CLN3-213ENST00000565047 TMEM69Q5SWH9 247 aa11.29□□□□□ -0.6
CLN3-213ENST00000565047 SSX9Q7RTT3 188 aa11.29□□□□□ -0.6
CLN3-213ENST00000565047 SLC25A42Q86VD7 318 aa11.29□□□□□ -0.6
CLN3-213ENST00000565047 GPX8Q8TED1 209 aa11.29□□□□□ -0.6
CLN3-213ENST00000565047 MOB3AQ96BX8 217 aa11.29□□□□□ -0.6
CLN3-213ENST00000565047 IZUMO1RA6ND01 250 aa11.28□□□□□ -0.6
CLN3-213ENST00000565047 UPK2O00526 184 aa11.28□□□□□ -0.6
CLN3-213ENST00000565047 SMIM18P0DKX4 95 aa11.28□□□□□ -0.6
CLN3-213ENST00000565047 IGHV4-30-4P0DP06 118 aa11.28□□□□□ -0.6
CLN3-213ENST00000565047 VBP1P61758 197 aa11.28□□□□□ -0.6
CLN3-213ENST00000565047 RPEL1Q2QD12 228 aa11.28□□□□□ -0.6
CLN3-213ENST00000565047 ANKRD13BQ86YJ7 626 aa11.28□□□□□ -0.6
CLN3-213ENST00000565047 CCDC140Q96MF4 163 aa11.28□□□□□ -0.6
CLN3-213ENST00000565047 CMTM3Q96MX0 182 aa11.28□□□□□ -0.6
CLN3-213ENST00000565047 FYTTD1Q96QD9 318 aaKnown RBP11.28□□□□□ -0.6
CLN3-213ENST00000565047 RSRP1Q9BUV0 290 aa11.28□□□□□ -0.6
CLN3-213ENST00000565047 PLEKHA2Q9HB19 425 aa11.28□□□□□ -0.6
CLN3-213ENST00000565047 EHFQ9NZC4 300 aa11.28□□□□□ -0.6
CLN3-213ENST00000565047 RYR2Q92736 4967 aa11.28□□□□□ -0.6
CLN3-213ENST00000565047 IGLV11-55A0A075B6I3 123 aa11.27□□□□□ -0.61
CLN3-213ENST00000565047 IGLC7A0M8Q6 106 aa11.27□□□□□ -0.61
CLN3-213ENST00000565047 PGLYRP1O75594 196 aaPredicted RBP11.27□□□□□ -0.61
CLN3-213ENST00000565047 PMP2P02689 132 aa11.27□□□□□ -0.61
CLN3-213ENST00000565047 NQO2P16083 231 aa11.27□□□□□ -0.61
CLN3-213ENST00000565047 PRSS3P35030 304 aa11.27□□□□□ -0.61
CLN3-213ENST00000565047 ZNF585BQ52M93 769 aa11.27□□□□□ -0.61
CLN3-213ENST00000565047 TMEM17Q86X19 198 aa11.27□□□□□ -0.61
CLN3-213ENST00000565047 CADM3Q8N126 398 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 106.4 ms