RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 TMEM208Q9BTX3 173 aa11.19□□□□□ -0.62
CLK3-215ENST00000564353 POLEQ07864 2286 aa11.19□□□□□ -0.62
CLK3-215ENST00000564353 PKDREJQ9NTG1 2253 aa11.19□□□□□ -0.62
CLK3-215ENST00000564353 C15orf62A8K5M9 175 aa11.18□□□□□ -0.62
CLK3-215ENST00000564353 P0C879 139 aa11.18□□□□□ -0.62
CLK3-215ENST00000564353 TMEM37Q8WXS4 190 aa11.18□□□□□ -0.62
CLK3-215ENST00000564353 STARD4Q96DR4 205 aa11.18□□□□□ -0.62
CLK3-215ENST00000564353 DKK4Q9UBT3 224 aa11.18□□□□□ -0.62
CLK3-215ENST00000564353 TNFSF13O75888 250 aa11.18□□□□□ -0.62
CLK3-215ENST00000564353 ACSF3Q4G176 576 aaPredicted RBP11.18□□□□□ -0.62
CLK3-215ENST00000564353 MIC13Q5XKP0 118 aa11.18□□□□□ -0.62
CLK3-215ENST00000564353 HIST3H2BBQ8N257 126 aa11.18□□□□□ -0.62
CLK3-215ENST00000564353 A6NNC1 897 aa11.17□□□□□ -0.62
CLK3-215ENST00000564353 C11orf94C9JXX5 98 aa11.17□□□□□ -0.62
CLK3-215ENST00000564353 C15orf65H3BRN8 121 aa11.17□□□□□ -0.62
CLK3-215ENST00000564353 DLEU1O43261 78 aa11.17□□□□□ -0.62
CLK3-215ENST00000564353 COX5AP20674 150 aa11.17□□□□□ -0.62
CLK3-215ENST00000564353 DUTP33316 252 aaKnown RBP11.17□□□□□ -0.62
CLK3-215ENST00000564353 GALR1P47211 349 aa11.17□□□□□ -0.62
CLK3-215ENST00000564353 SEM1Q6ZVN7 128 aa11.17□□□□□ -0.62
CLK3-215ENST00000564353 GCSAMQ8N6F7 178 aa11.17□□□□□ -0.62
CLK3-215ENST00000564353 OR4X1Q8NH49 305 aa11.17□□□□□ -0.62
CLK3-215ENST00000564353 OR4A16Q8NH70 328 aa11.17□□□□□ -0.62
CLK3-215ENST00000564353 OR6C3Q9NZP0 311 aa11.17□□□□□ -0.62
CLK3-215ENST00000564353 NAT8Q9UHE5 227 aa11.17□□□□□ -0.62
CLK3-215ENST00000564353 SH3BGRL2Q9UJC5 107 aa11.17□□□□□ -0.62
CLK3-215ENST00000564353 PROCRQ9UNN8 238 aa11.17□□□□□ -0.62
CLK3-215ENST00000564353 CTXND1A0A1B0GTU2 59 aa11.17□□□□□ -0.62
CLK3-215ENST00000564353 H7BYZ3 331 aa11.17□□□□□ -0.62
CLK3-215ENST00000564353 CDC34P49427 236 aaPredicted RBP11.17□□□□□ -0.62
CLK3-215ENST00000564353 BHLHA15Q7RTS1 189 aaPredicted RBP11.17□□□□□ -0.62
CLK3-215ENST00000564353 OR13D1Q8NGV5 346 aa11.17□□□□□ -0.62
CLK3-215ENST00000564353 ACTR3CQ9C0K3 210 aaPredicted RBP11.17□□□□□ -0.62
CLK3-215ENST00000564353 A0A1B0GUS0 222 aa11.17□□□□□ -0.62
CLK3-215ENST00000564353 K7EM74 188 aa11.17□□□□□ -0.62
CLK3-215ENST00000564353 AQP7O14520 342 aa11.17□□□□□ -0.62
CLK3-215ENST00000564353 PHOX2AO14813 284 aa11.17□□□□□ -0.62
CLK3-215ENST00000564353 NDUFB4O95168 129 aa11.17□□□□□ -0.62
CLK3-215ENST00000564353 CD1BP29016 333 aa11.17□□□□□ -0.62
CLK3-215ENST00000564353 MORN2Q502X0 79 aa11.17□□□□□ -0.62
CLK3-215ENST00000564353 ZNF114Q8NC26 417 aa11.17□□□□□ -0.62
CLK3-215ENST00000564353 ITLN1Q8WWA0 313 aa11.17□□□□□ -0.62
CLK3-215ENST00000564353 PTPRZ1P23471 2315 aaPredicted RBP11.16□□□□□ -0.62
CLK3-215ENST00000564353 KBTBD11O94819 623 aa11.16□□□□□ -0.62
CLK3-215ENST00000564353 IGHG3P01860 377 aa11.16□□□□□ -0.62
CLK3-215ENST00000564353 GYPAP02724 150 aa11.16□□□□□ -0.62
CLK3-215ENST00000564353 MRPS11P82912 194 aaKnown RBP11.16□□□□□ -0.62
CLK3-215ENST00000564353 ZNF71Q9NQZ8 489 aaPredicted RBP11.16□□□□□ -0.62
CLK3-215ENST00000564353 SEC14L6B5MCN3 397 aa11.16□□□□□ -0.62
CLK3-215ENST00000564353 FAM90A26D6RGX4 464 aa11.16□□□□□ -0.62
CLK3-215ENST00000564353 RAB29O14966 203 aa11.16□□□□□ -0.62
CLK3-215ENST00000564353 C1QTNF9P0C862 333 aa11.16□□□□□ -0.62
CLK3-215ENST00000564353 PNRC1Q12796 327 aaPredicted RBP11.16□□□□□ -0.62
CLK3-215ENST00000564353 GUSBP1Q15486 140 aa11.16□□□□□ -0.62
CLK3-215ENST00000564353 MOB3BQ86TA1 216 aa11.16□□□□□ -0.62
CLK3-215ENST00000564353 SARAFQ96BY9 339 aa11.16□□□□□ -0.62
CLK3-215ENST00000564353 MS4A5Q9H3V2 200 aa11.16□□□□□ -0.62
CLK3-215ENST00000564353 FUT9Q9Y231 359 aa11.16□□□□□ -0.62
CLK3-215ENST00000564353 ANKRD11Q6UB99 2663 aaPredicted RBP11.15□□□□□ -0.62
CLK3-215ENST00000564353 PRR33A8MZF0 331 aa11.15□□□□□ -0.62
CLK3-215ENST00000564353 B4DEV8 164 aa11.15□□□□□ -0.62
CLK3-215ENST00000564353 ZNF66Q6ZN08 573 aa11.15□□□□□ -0.62
CLK3-215ENST00000564353 OR10A7Q8NGE5 316 aa11.15□□□□□ -0.62
CLK3-215ENST00000564353 NCOR1P1Q9H4R4 102 aa11.15□□□□□ -0.62
CLK3-215ENST00000564353 TRAV17A0A0B4J275 112 aa11.15□□□□□ -0.62
CLK3-215ENST00000564353 A0A1W2PPV4 95 aa11.15□□□□□ -0.62
CLK3-215ENST00000564353 ACTL6BO94805 426 aa11.15□□□□□ -0.62
CLK3-215ENST00000564353 CD82P27701 267 aa11.15□□□□□ -0.62
CLK3-215ENST00000564353 SPATA31B1PQ5VZV4 182 aa11.15□□□□□ -0.62
CLK3-215ENST00000564353 CYP2G1PQ6ZSU1 146 aa11.15□□□□□ -0.62
CLK3-215ENST00000564353 PACRGQ96M98 296 aaPredicted RBP11.15□□□□□ -0.62
CLK3-215ENST00000564353 P2RX4Q99571 388 aa11.15□□□□□ -0.62
CLK3-215ENST00000564353 MMP23AO75900 390 aa11.14□□□□□ -0.63
CLK3-215ENST00000564353 THBS3P49746 956 aa11.14□□□□□ -0.63
CLK3-215ENST00000564353 ASPHD1Q5U4P2 390 aa11.14□□□□□ -0.63
CLK3-215ENST00000564353 FAM78BQ5VT40 261 aa11.14□□□□□ -0.63
CLK3-215ENST00000564353 ZNF474Q6S9Z5 364 aaPredicted RBP11.14□□□□□ -0.63
CLK3-215ENST00000564353 LYG1Q8N1E2 194 aa11.14□□□□□ -0.63
CLK3-215ENST00000564353 Q8N7P7 452 aa11.14□□□□□ -0.63
CLK3-215ENST00000564353 RND1Q92730 232 aa11.14□□□□□ -0.63
CLK3-215ENST00000564353 HSD17B10Q99714 261 aaKnown RBP11.14□□□□□ -0.63
CLK3-215ENST00000564353 TMEM140Q9NV12 185 aa11.14□□□□□ -0.63
CLK3-215ENST00000564353 YLPM1P49750 1951 aaKnown RBP11.14□□□□□ -0.63
CLK3-215ENST00000564353 HCFC1P51610 2035 aa11.14□□□□□ -0.63
CLK3-215ENST00000564353 J3QW42 95 aa11.14□□□□□ -0.63
CLK3-215ENST00000564353 ARL14EPLP0DKL9 152 aa11.14□□□□□ -0.63
CLK3-215ENST00000564353 RND2P52198 227 aa11.14□□□□□ -0.63
CLK3-215ENST00000564353 GNB1P62873 340 aa11.14□□□□□ -0.63
CLK3-215ENST00000564353 FAM27E3Q08E93 113 aa11.14□□□□□ -0.63
CLK3-215ENST00000564353 ZBTB34Q8NCN2 500 aa11.14□□□□□ -0.63
CLK3-215ENST00000564353 TMEM170AQ8WVE7 144 aa11.14□□□□□ -0.63
CLK3-215ENST00000564353 OR5B12Q96R08 314 aa11.14□□□□□ -0.63
CLK3-215ENST00000564353 S1PR3Q99500 378 aa11.14□□□□□ -0.63
CLK3-215ENST00000564353 HIST1H2BLQ99880 126 aa11.14□□□□□ -0.63
CLK3-215ENST00000564353 ZNF318Q5VUA4 2279 aa11.14□□□□□ -0.63
CLK3-215ENST00000564353 PIGBOS1A0A0B4J2F0 54 aa11.13□□□□□ -0.63
CLK3-215ENST00000564353 FOXH1O75593 365 aa11.13□□□□□ -0.63
CLK3-215ENST00000564353 PFN1P07737 140 aaKnown RBP11.13□□□□□ -0.63
CLK3-215ENST00000564353 WNT2P09544 360 aa11.13□□□□□ -0.63
CLK3-215ENST00000564353 KITLGP21583 273 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms