RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 SLC25A28Q96A46 364 aa7.65□□□□□ -1.18
VPS39-205ENST00000562258 LINC00052Q96N35 136 aa7.65□□□□□ -1.18
VPS39-205ENST00000562258 GAFA1Q96PS6 74 aa7.65□□□□□ -1.18
VPS39-205ENST00000562258 NEURL2Q9BR09 285 aa7.65□□□□□ -1.18
VPS39-205ENST00000562258 SLC25A33Q9BSK2 321 aa7.65□□□□□ -1.18
VPS39-205ENST00000562258 NPFFR1Q9GZQ6 430 aa7.65□□□□□ -1.18
VPS39-205ENST00000562258 MED9Q9NWA0 146 aa7.65□□□□□ -1.18
VPS39-205ENST00000562258 FBXL17Q9UF56 701 aa7.65□□□□□ -1.18
VPS39-205ENST00000562258 CHD6Q8TD26 2715 aa7.65□□□□□ -1.18
VPS39-205ENST00000562258 TNRC18O15417 2968 aaPredicted RBP7.65□□□□□ -1.19
VPS39-205ENST00000562258 IGHV1-8P0DP01 117 aa7.65□□□□□ -1.19
VPS39-205ENST00000562258 DYNLT3P51808 116 aa7.65□□□□□ -1.19
VPS39-205ENST00000562258 UBE2G1P62253 170 aa7.65□□□□□ -1.19
VPS39-205ENST00000562258 PXDC1Q5TGL8 231 aa7.65□□□□□ -1.19
VPS39-205ENST00000562258 FAM78BQ5VT40 261 aa7.65□□□□□ -1.19
VPS39-205ENST00000562258 BTNL8Q6UX41 500 aa7.65□□□□□ -1.19
VPS39-205ENST00000562258 ZNF497Q6ZNH5 498 aa7.65□□□□□ -1.19
VPS39-205ENST00000562258 WDR86Q86TI4 376 aa7.65□□□□□ -1.19
VPS39-205ENST00000562258 CCDC28AQ8IWP9 274 aa7.65□□□□□ -1.19
VPS39-205ENST00000562258 LINC01356Q8N9X3 169 aa7.65□□□□□ -1.19
VPS39-205ENST00000562258 PRELID1Q9Y255 219 aa7.65□□□□□ -1.19
VPS39-205ENST00000562258 IGHV4-30-2A0A087WSY4 118 aa7.64□□□□□ -1.19
VPS39-205ENST00000562258 IGHV2-26A0A0B4J1V2 119 aa7.64□□□□□ -1.19
VPS39-205ENST00000562258 ANKRD55Q3KP44 614 aa7.64□□□□□ -1.19
VPS39-205ENST00000562258 TOR2AQ5JU69 321 aa7.64□□□□□ -1.19
VPS39-205ENST00000562258 HEPN1Q6WQI6 88 aa7.64□□□□□ -1.19
VPS39-205ENST00000562258 BPIFCQ8NFQ6 507 aa7.64□□□□□ -1.19
VPS39-205ENST00000562258 RPUSD4Q96CM3 377 aaKnown RBP7.64□□□□□ -1.19
VPS39-205ENST00000562258 COQ2Q96H96 371 aa7.64□□□□□ -1.19
VPS39-205ENST00000562258 QTRT1Q9BXR0 403 aaKnown RBP7.64□□□□□ -1.19
VPS39-205ENST00000562258 ACTR3CQ9C0K3 210 aaPredicted RBP7.64□□□□□ -1.19
VPS39-205ENST00000562258 TCF19Q9Y242 345 aa7.64□□□□□ -1.19
VPS39-205ENST00000562258 PSMB3P49720 205 aa7.64□□□□□ -1.19
VPS39-205ENST00000562258 HSPE1P61604 102 aaKnown RBP7.64□□□□□ -1.19
VPS39-205ENST00000562258 NHLH2Q02577 135 aa7.64□□□□□ -1.19
VPS39-205ENST00000562258 SIGIRRQ6IA17 410 aa7.64□□□□□ -1.19
VPS39-205ENST00000562258 OR4X1Q8NH49 305 aa7.64□□□□□ -1.19
VPS39-205ENST00000562258 FRZBQ92765 325 aa7.64□□□□□ -1.19
VPS39-205ENST00000562258 OR4C12Q96R67 309 aa7.64□□□□□ -1.19
VPS39-205ENST00000562258 TMEM231Q9H6L2 316 aa7.64□□□□□ -1.19
VPS39-205ENST00000562258 ZNF107Q9UII5 783 aaPredicted RBP7.64□□□□□ -1.19
VPS39-205ENST00000562258 IGHV4-61A0A0C4DH41 118 aa7.64□□□□□ -1.19
VPS39-205ENST00000562258 KIAA1324LA8MWY0 1029 aaPredicted RBP7.64□□□□□ -1.19
VPS39-205ENST00000562258 H0Y980 276 aa7.64□□□□□ -1.19
VPS39-205ENST00000562258 C1QBP02746 253 aa7.64□□□□□ -1.19
VPS39-205ENST00000562258 SAA4P35542 130 aa7.64□□□□□ -1.19
VPS39-205ENST00000562258 CDSNQ15517 529 aa7.64□□□□□ -1.19
VPS39-205ENST00000562258 RPL7L1Q6DKI1 246 aaKnown RBP7.64□□□□□ -1.19
VPS39-205ENST00000562258 IGLV3-9A0A075B6K5 115 aa7.63□□□□□ -1.19
VPS39-205ENST00000562258 K7EQM0 130 aa7.63□□□□□ -1.19
VPS39-205ENST00000562258 CDS2O95674 445 aa7.63□□□□□ -1.19
VPS39-205ENST00000562258 MOSP00540 346 aa7.63□□□□□ -1.19
VPS39-205ENST00000562258 HBE1P02100 147 aa7.63□□□□□ -1.19
VPS39-205ENST00000562258 C10orf55Q5SWW7 151 aa7.63□□□□□ -1.19
VPS39-205ENST00000562258 OR4F5Q8NH21 305 aa7.63□□□□□ -1.19
VPS39-205ENST00000562258 IGFBPL1Q8WX77 278 aa7.63□□□□□ -1.19
VPS39-205ENST00000562258 GRAMD2BQ96HH9 432 aa7.63□□□□□ -1.19
VPS39-205ENST00000562258 OR4F4Q96R69 305 aa7.63□□□□□ -1.19
VPS39-205ENST00000562258 UNKLQ9H9P5 680 aaKnown RBP7.63□□□□□ -1.19
VPS39-205ENST00000562258 MMP24Q9Y5R2 645 aa7.63□□□□□ -1.19
VPS39-205ENST00000562258 USP24Q9UPU5 2620 aa7.63□□□□□ -1.19
VPS39-205ENST00000562258 A0A1B0GU03 582 aa7.63□□□□□ -1.19
VPS39-205ENST00000562258 ANOS1P23352 680 aa7.63□□□□□ -1.19
VPS39-205ENST00000562258 LHFPL4Q7Z7J7 247 aa7.63□□□□□ -1.19
VPS39-205ENST00000562258 COMMD7Q86VX2 200 aa7.63□□□□□ -1.19
VPS39-205ENST00000562258 OR4A5Q8NH83 315 aa7.63□□□□□ -1.19
VPS39-205ENST00000562258 NPIPB11E5RHQ5 1161 aa7.63□□□□□ -1.19
VPS39-205ENST00000562258 IGHV4-39P01824 125 aa7.63□□□□□ -1.19
VPS39-205ENST00000562258 FGF8P55075 233 aaPredicted RBP7.63□□□□□ -1.19
VPS39-205ENST00000562258 HTD2P86397 168 aa7.63□□□□□ -1.19
VPS39-205ENST00000562258 ARL16Q0P5N6 197 aa7.63□□□□□ -1.19
VPS39-205ENST00000562258 DEFB113Q30KQ7 82 aa7.63□□□□□ -1.19
VPS39-205ENST00000562258 ZNF767PQ75MW2 155 aa7.63□□□□□ -1.19
VPS39-205ENST00000562258 TRAF4Q9BUZ4 470 aaPredicted RBP7.63□□□□□ -1.19
VPS39-205ENST00000562258 KLF2Q9Y5W3 355 aaPredicted RBP7.63□□□□□ -1.19
VPS39-205ENST00000562258 SLC31A2O15432 143 aa7.63□□□□□ -1.19
VPS39-205ENST00000562258 CT45A10P0DMU9 189 aa7.63□□□□□ -1.19
VPS39-205ENST00000562258 NSUN5P1Q3KNT7 163 aa7.63□□□□□ -1.19
VPS39-205ENST00000562258 SOHLH1Q5JUK2 328 aa7.63□□□□□ -1.19
VPS39-205ENST00000562258 OR52M1Q8NGK5 317 aa7.63□□□□□ -1.19
VPS39-205ENST00000562258 TVP23CQ96ET8 276 aa7.63□□□□□ -1.19
VPS39-205ENST00000562258 OR10C1Q96KK4 312 aa7.63□□□□□ -1.19
VPS39-205ENST00000562258 NXF2Q9GZY0 626 aaKnown RBP7.63□□□□□ -1.19
VPS39-205ENST00000562258 GHITMQ9H3K2 345 aa7.63□□□□□ -1.19
VPS39-205ENST00000562258 MLXQ9UH92 298 aa7.63□□□□□ -1.19
VPS39-205ENST00000562258 IGHV3-66A0A0C4DH42 116 aa7.62□□□□□ -1.19
VPS39-205ENST00000562258 CGB1A6NKQ9 187 aa7.62□□□□□ -1.19
VPS39-205ENST00000562258 M6PRP20645 277 aa7.62□□□□□ -1.19
VPS39-205ENST00000562258 OR10J1P30954 320 aa7.62□□□□□ -1.19
VPS39-205ENST00000562258 RAG2P55895 527 aa7.62□□□□□ -1.19
VPS39-205ENST00000562258 PRSS54Q6PEW0 395 aa7.62□□□□□ -1.19
VPS39-205ENST00000562258 H1FOOQ8IZA3 346 aaPredicted RBP7.62□□□□□ -1.19
VPS39-205ENST00000562258 FAM89BQ8N5H3 189 aa7.62□□□□□ -1.19
VPS39-205ENST00000562258 OR4F17Q8NGA8 305 aa7.62□□□□□ -1.19
VPS39-205ENST00000562258 BORCS7Q96B45 105 aa7.62□□□□□ -1.19
VPS39-205ENST00000562258 FRYLO94915 3013 aa7.62□□□□□ -1.19
VPS39-205ENST00000562258 TRBV6-7A0A0A0MS04 114 aa7.62□□□□□ -1.19
VPS39-205ENST00000562258 H3BTX0 84 aa7.62□□□□□ -1.19
VPS39-205ENST00000562258 RAMP3O60896 148 aa7.62□□□□□ -1.19
VPS39-205ENST00000562258 AGAP20933 346 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms