RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 TMPRSS2O15393 492 aa11.16□□□□□ -0.62
CLK3-206ENST00000562078 CELA3AP09093 270 aa11.16□□□□□ -0.62
CLK3-206ENST00000562078 IGKV1-13P0DP09 117 aa11.16□□□□□ -0.62
CLK3-206ENST00000562078 B4GALT1P15291 398 aa11.16□□□□□ -0.62
CLK3-206ENST00000562078 UCP1P25874 307 aa11.16□□□□□ -0.62
CLK3-206ENST00000562078 ATP5G3P48201 142 aa11.16□□□□□ -0.62
CLK3-206ENST00000562078 PSG9Q00887 426 aa11.16□□□□□ -0.62
CLK3-206ENST00000562078 FAM27BQ5VT28 67 aa11.16□□□□□ -0.62
CLK3-206ENST00000562078 WDR73Q6P4I2 378 aa11.16□□□□□ -0.62
CLK3-206ENST00000562078 LINC00696Q6ZRV3 163 aa11.16□□□□□ -0.62
CLK3-206ENST00000562078 OR10G9Q8NGN4 311 aa11.16□□□□□ -0.62
CLK3-206ENST00000562078 OR10G7Q8NGN6 311 aa11.16□□□□□ -0.62
CLK3-206ENST00000562078 GMPPAQ96IJ6 420 aaPredicted RBP11.16□□□□□ -0.62
CLK3-206ENST00000562078 RAB40CQ96S21 281 aa11.16□□□□□ -0.62
CLK3-206ENST00000562078 CLEC7AQ9BXN2 247 aa11.16□□□□□ -0.62
CLK3-206ENST00000562078 ZNF324O75467 553 aaPredicted RBP11.15□□□□□ -0.62
CLK3-206ENST00000562078 NTF3P20783 257 aa11.15□□□□□ -0.62
CLK3-206ENST00000562078 OTX1P32242 354 aaPredicted RBP11.15□□□□□ -0.62
CLK3-206ENST00000562078 FAM173AQ9BQD7 235 aa11.15□□□□□ -0.62
CLK3-206ENST00000562078 AKAP13Q12802 2813 aa11.15□□□□□ -0.62
CLK3-206ENST00000562078 RAB29O14966 203 aa11.15□□□□□ -0.62
CLK3-206ENST00000562078 GNG7O60262 68 aa11.15□□□□□ -0.62
CLK3-206ENST00000562078 S1PR2O95136 353 aa11.15□□□□□ -0.62
CLK3-206ENST00000562078 IGLV3-1P01715 115 aa11.15□□□□□ -0.62
CLK3-206ENST00000562078 CELA3BP08861 270 aa11.15□□□□□ -0.62
CLK3-206ENST00000562078 FUT6P51993 359 aa11.15□□□□□ -0.62
CLK3-206ENST00000562078 ARF6P62330 175 aa11.15□□□□□ -0.62
CLK3-206ENST00000562078 OR1C1Q15619 314 aa11.15□□□□□ -0.62
CLK3-206ENST00000562078 CCL28Q9NRJ3 127 aa11.15□□□□□ -0.62
CLK3-206ENST00000562078 TMEM38BQ9NVV0 291 aa11.15□□□□□ -0.62
CLK3-206ENST00000562078 TRAV8-6A0A0B4J262 113 aa11.14□□□□□ -0.63
CLK3-206ENST00000562078 MUC21A0A0G2JKD1 596 aa11.14□□□□□ -0.63
CLK3-206ENST00000562078 MUC21A0A140T8X8 626 aa11.14□□□□□ -0.63
CLK3-206ENST00000562078 NKX2-8O15522 239 aa11.14□□□□□ -0.63
CLK3-206ENST00000562078 SPINK4O60575 86 aa11.14□□□□□ -0.63
CLK3-206ENST00000562078 DHRS3O75911 302 aa11.14□□□□□ -0.63
CLK3-206ENST00000562078 PATE4P0C8F1 98 aa11.14□□□□□ -0.63
CLK3-206ENST00000562078 TIMP3P35625 211 aa11.14□□□□□ -0.63
CLK3-206ENST00000562078 PRSS12P56730 875 aa11.14□□□□□ -0.63
CLK3-206ENST00000562078 HBG1P69891 147 aa11.14□□□□□ -0.63
CLK3-206ENST00000562078 HBG2P69892 147 aa11.14□□□□□ -0.63
CLK3-206ENST00000562078 SRYQ05066 204 aa11.14□□□□□ -0.63
CLK3-206ENST00000562078 FOXC1Q12948 553 aa11.14□□□□□ -0.63
CLK3-206ENST00000562078 SPANXN5Q5MJ07 72 aa11.14□□□□□ -0.63
CLK3-206ENST00000562078 MUC21Q5SSG8 566 aa11.14□□□□□ -0.63
CLK3-206ENST00000562078 FAM71F2Q6NXP2 309 aa11.14□□□□□ -0.63
CLK3-206ENST00000562078 OR10G8Q8NGN5 311 aa11.14□□□□□ -0.63
CLK3-206ENST00000562078 SPTSSAQ969W0 71 aa11.14□□□□□ -0.63
CLK3-206ENST00000562078 TRAV9-2A0A087WT02 112 aa11.14□□□□□ -0.63
CLK3-206ENST00000562078 NUDT3O95989 172 aa11.14□□□□□ -0.63
CLK3-206ENST00000562078 CEACAM16Q2WEN9 425 aa11.14□□□□□ -0.63
CLK3-206ENST00000562078 BATF2Q8N1L9 274 aa11.14□□□□□ -0.63
CLK3-206ENST00000562078 OR4S2Q8NH73 311 aa11.14□□□□□ -0.63
CLK3-206ENST00000562078 FAM216AQ8WUB2 273 aa11.14□□□□□ -0.63
CLK3-206ENST00000562078 SYNGR2O43760 224 aa11.13□□□□□ -0.63
CLK3-206ENST00000562078 OR7C2O60412 319 aa11.13□□□□□ -0.63
CLK3-206ENST00000562078 IGHV3-9P01782 118 aa11.13□□□□□ -0.63
CLK3-206ENST00000562078 MAGEA5P43359 124 aa11.13□□□□□ -0.63
CLK3-206ENST00000562078 PAX2Q02962 417 aa11.13□□□□□ -0.63
CLK3-206ENST00000562078 RBPJQ06330 500 aa11.13□□□□□ -0.63
CLK3-206ENST00000562078 Q56UQ5 140 aa11.13□□□□□ -0.63
CLK3-206ENST00000562078 FAM58AQ8N1B3 248 aa11.13□□□□□ -0.63
CLK3-206ENST00000562078 OR1N2Q8NGR9 330 aa11.13□□□□□ -0.63
CLK3-206ENST00000562078 OR2AE1Q8NHA4 323 aa11.13□□□□□ -0.63
CLK3-206ENST00000562078 CPT1CQ8TCG5 803 aa11.13□□□□□ -0.63
CLK3-206ENST00000562078 APOBEC3DQ96AK3 386 aaPredicted RBP11.13□□□□□ -0.63
CLK3-206ENST00000562078 BORCS7Q96B45 105 aa11.13□□□□□ -0.63
CLK3-206ENST00000562078 TMEM186Q96B77 213 aa11.13□□□□□ -0.63
CLK3-206ENST00000562078 TMEM204Q9BSN7 226 aa11.13□□□□□ -0.63
CLK3-206ENST00000562078 B4GALT7Q9UBV7 327 aa11.13□□□□□ -0.63
CLK3-206ENST00000562078 IGKV1-27A0A075B6S5 117 aa11.13□□□□□ -0.63
CLK3-206ENST00000562078 C17orf112F2Z3M2 114 aa11.13□□□□□ -0.63
CLK3-206ENST00000562078 G3V4G9 280 aa11.13□□□□□ -0.63
CLK3-206ENST00000562078 SYNGR3O43761 229 aa11.13□□□□□ -0.63
CLK3-206ENST00000562078 ZNF32P17041 273 aa11.13□□□□□ -0.63
CLK3-206ENST00000562078 CRYGSP22914 178 aa11.13□□□□□ -0.63
CLK3-206ENST00000562078 BVES-AS1Q5T3Y7 98 aa11.13□□□□□ -0.63
CLK3-206ENST00000562078 SAMD13Q5VXD3 122 aa11.13□□□□□ -0.63
CLK3-206ENST00000562078 DEFB125Q8N687 156 aa11.13□□□□□ -0.63
CLK3-206ENST00000562078 FER1L6-AS1Q8NA97 138 aa11.13□□□□□ -0.63
CLK3-206ENST00000562078 FOXB1Q99853 325 aa11.13□□□□□ -0.63
CLK3-206ENST00000562078 TTTY12Q9BZ98 90 aa11.13□□□□□ -0.63
CLK3-206ENST00000562078 CACNG5Q9UF02 275 aa11.13□□□□□ -0.63
CLK3-206ENST00000562078 ZFHX4Q86UP3 3567 aa11.12□□□□□ -0.63
CLK3-206ENST00000562078 ARF1P84077 181 aaKnown RBP11.12□□□□□ -0.63
CLK3-206ENST00000562078 SLC38A11Q08AI6 406 aa11.12□□□□□ -0.63
CLK3-206ENST00000562078 RNPS1Q15287 305 aaKnown RBP11.12□□□□□ -0.63
CLK3-206ENST00000562078 OR5D13Q8NGL4 314 aa11.12□□□□□ -0.63
CLK3-206ENST00000562078 OCC1Q8TAD7 63 aa11.12□□□□□ -0.63
CLK3-206ENST00000562078 IL36BQ9NZH7 164 aa11.12□□□□□ -0.63
CLK3-206ENST00000562078 LOC400499M0QZD8 3231 aa11.12□□□□□ -0.63
CLK3-206ENST00000562078 SLC22A20A6NK97 555 aa11.12□□□□□ -0.63
CLK3-206ENST00000562078 C22orf46C9J442 243 aa11.12□□□□□ -0.63
CLK3-206ENST00000562078 WT1P19544 449 aaPredicted RBP11.12□□□□□ -0.63
CLK3-206ENST00000562078 LGALS4P56470 323 aa11.12□□□□□ -0.63
CLK3-206ENST00000562078 PSG7Q13046 419 aa11.12□□□□□ -0.63
CLK3-206ENST00000562078 PMCHL1Q16048 86 aa11.12□□□□□ -0.63
CLK3-206ENST00000562078 OR51H1Q8NH63 302 aa11.12□□□□□ -0.63
CLK3-206ENST00000562078 OR1F12Q8NHA8 337 aa11.12□□□□□ -0.63
CLK3-206ENST00000562078 TSKUQ8WUA8 353 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms