RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 RNF24Q9Y225 148 aa6.16□□□□□ -1.42
VPS39-204ENST00000561818 TCF19Q9Y242 345 aa6.16□□□□□ -1.42
VPS39-204ENST00000561818 CARHSP1Q9Y2V2 147 aaKnown RBP6.16□□□□□ -1.42
VPS39-204ENST00000561818 NCOR2Q9Y618 2525 aa6.16□□□□□ -1.42
VPS39-204ENST00000561818 CACNA1DQ01668 2161 aa6.16□□□□□ -1.42
VPS39-204ENST00000561818 LOC105371242A0A075B767 164 aa6.15□□□□□ -1.42
VPS39-204ENST00000561818 IGHV2-26A0A0B4J1V2 119 aa6.15□□□□□ -1.42
VPS39-204ENST00000561818 UPK2O00526 184 aa6.15□□□□□ -1.42
VPS39-204ENST00000561818 HSPB1P04792 205 aaKnown RBP6.15□□□□□ -1.42
VPS39-204ENST00000561818 IFNA4P05014 189 aa6.15□□□□□ -1.42
VPS39-204ENST00000561818 FABP1P07148 127 aa6.15□□□□□ -1.42
VPS39-204ENST00000561818 CT45A6P0DMU7 189 aa6.15□□□□□ -1.42
VPS39-204ENST00000561818 CT45A5P0DMU8 189 aa6.15□□□□□ -1.42
VPS39-204ENST00000561818 CT45A7P0DMV0 189 aa6.15□□□□□ -1.42
VPS39-204ENST00000561818 IAPPP10997 89 aa6.15□□□□□ -1.42
VPS39-204ENST00000561818 SELLP14151 372 aa6.15□□□□□ -1.42
VPS39-204ENST00000561818 GNLYP22749 145 aa6.15□□□□□ -1.42
VPS39-204ENST00000561818 HTR1DP28221 377 aa6.15□□□□□ -1.42
VPS39-204ENST00000561818 CD1BP29016 333 aa6.15□□□□□ -1.42
VPS39-204ENST00000561818 S100A7P31151 101 aa6.15□□□□□ -1.42
VPS39-204ENST00000561818 GPX4P36969 197 aaPredicted RBP6.15□□□□□ -1.42
VPS39-204ENST00000561818 PDLIM4P50479 330 aa6.15□□□□□ -1.42
VPS39-204ENST00000561818 ZNF134P52741 427 aa6.15□□□□□ -1.42
VPS39-204ENST00000561818 DLX6P56179 175 aa6.15□□□□□ -1.42
VPS39-204ENST00000561818 C2orf83Q53S99 150 aa6.15□□□□□ -1.42
VPS39-204ENST00000561818 KHDC3LQ587J8 217 aa6.15□□□□□ -1.42
VPS39-204ENST00000561818 RPL39P5Q59GN2 51 aa6.15□□□□□ -1.42
VPS39-204ENST00000561818 SPRNQ5BIV9 151 aa6.15□□□□□ -1.42
VPS39-204ENST00000561818 OR2B11Q5JQS5 317 aa6.15□□□□□ -1.42
VPS39-204ENST00000561818 FAM201AQ5SY85 155 aa6.15□□□□□ -1.42
VPS39-204ENST00000561818 ETV3LQ6ZN32 361 aa6.15□□□□□ -1.42
VPS39-204ENST00000561818 Q6ZRM9 215 aa6.15□□□□□ -1.42
VPS39-204ENST00000561818 ZNF383Q8NA42 475 aa6.15□□□□□ -1.42
VPS39-204ENST00000561818 OR11H6Q8NGC7 330 aa6.15□□□□□ -1.42
VPS39-204ENST00000561818 FAM213BQ8TBF2 198 aa6.15□□□□□ -1.42
VPS39-204ENST00000561818 ST6GALNAC6Q969X2 333 aa6.15□□□□□ -1.42
VPS39-204ENST00000561818 RNF2Q99496 336 aa6.15□□□□□ -1.42
VPS39-204ENST00000561818 ACTR3CQ9C0K3 210 aaPredicted RBP6.15□□□□□ -1.42
VPS39-204ENST00000561818 MS4A7Q9GZW8 240 aaPredicted RBP6.15□□□□□ -1.42
VPS39-204ENST00000561818 HRH4Q9H3N8 390 aa6.15□□□□□ -1.42
VPS39-204ENST00000561818 NPVFQ9HCQ7 196 aa6.15□□□□□ -1.42
VPS39-204ENST00000561818 TREM1Q9NP99 234 aa6.15□□□□□ -1.42
VPS39-204ENST00000561818 MANBALQ9NQG1 85 aa6.15□□□□□ -1.42
VPS39-204ENST00000561818 CTSZQ9UBR2 303 aa6.15□□□□□ -1.42
VPS39-204ENST00000561818 TBL2Q9Y4P3 447 aaKnown RBP6.15□□□□□ -1.42
VPS39-204ENST00000561818 OR51B2Q9Y5P1 312 aa6.15□□□□□ -1.42
VPS39-204ENST00000561818 INSIG2Q9Y5U4 225 aa6.15□□□□□ -1.42
VPS39-204ENST00000561818 ARL2-SNX15V9GYD0 113 aa6.15□□□□□ -1.42
VPS39-204ENST00000561818 PCNX1Q96RV3 2341 aa6.15□□□□□ -1.43
VPS39-204ENST00000561818 DSCAML1Q8TD84 2053 aa6.14□□□□□ -1.43
VPS39-204ENST00000561818 KIAA2026Q5HYC2 2103 aa6.14□□□□□ -1.43
VPS39-204ENST00000561818 CELSR3Q9NYQ7 3312 aa6.14□□□□□ -1.43
VPS39-204ENST00000561818 BOD1L1Q8NFC6 3051 aa6.14□□□□□ -1.43
VPS39-204ENST00000561818 UBE2L5PA0A1B0GUS4 154 aa6.14□□□□□ -1.43
VPS39-204ENST00000561818 MED19A0JLT2 244 aaPredicted RBP6.14□□□□□ -1.43
VPS39-204ENST00000561818 SMCO3A2RU48 225 aa6.14□□□□□ -1.43
VPS39-204ENST00000561818 F8W036 122 aa6.14□□□□□ -1.43
VPS39-204ENST00000561818 BUB1B-PAK6H3BSN5 160 aa6.14□□□□□ -1.43
VPS39-204ENST00000561818 SIAH2O43255 324 aa6.14□□□□□ -1.43
VPS39-204ENST00000561818 TMEM50AO95807 157 aa6.14□□□□□ -1.43
VPS39-204ENST00000561818 IGLV1-47P01700 117 aa6.14□□□□□ -1.43
VPS39-204ENST00000561818 CD5P06127 495 aa6.14□□□□□ -1.43
VPS39-204ENST00000561818 IL6RP08887 468 aaPredicted RBP6.14□□□□□ -1.43
VPS39-204ENST00000561818 GATA3P23771 443 aa6.14□□□□□ -1.43
VPS39-204ENST00000561818 PRTN3P24158 256 aa6.14□□□□□ -1.43
VPS39-204ENST00000561818 OPRK1P41145 380 aa6.14□□□□□ -1.43
VPS39-204ENST00000561818 VDAC2P45880 294 aaPredicted RBP6.14□□□□□ -1.43
VPS39-204ENST00000561818 PSMB3P49720 205 aa6.14□□□□□ -1.43
VPS39-204ENST00000561818 TMEM267Q0VDI3 215 aaPredicted RBP6.14□□□□□ -1.43
VPS39-204ENST00000561818 PNRC1Q12796 327 aaPredicted RBP6.14□□□□□ -1.43
VPS39-204ENST00000561818 FAM74A3Q4VXF1 159 aa6.14□□□□□ -1.43
VPS39-204ENST00000561818 C10orf91Q5T1B1 145 aa6.14□□□□□ -1.43
VPS39-204ENST00000561818 ZNF841Q6ZN19 808 aa6.14□□□□□ -1.43
VPS39-204ENST00000561818 TMEM182Q6ZP80 229 aaPredicted RBP6.14□□□□□ -1.43
VPS39-204ENST00000561818 THNSL2Q86YJ6 484 aa6.14□□□□□ -1.43
VPS39-204ENST00000561818 MBD3L1Q8WWY6 194 aa6.14□□□□□ -1.43
VPS39-204ENST00000561818 C5orf30Q96GV9 206 aa6.14□□□□□ -1.43
VPS39-204ENST00000561818 SLC35E1Q96K37 410 aa6.14□□□□□ -1.43
VPS39-204ENST00000561818 NABP2Q9BQ15 211 aa6.14□□□□□ -1.43
VPS39-204ENST00000561818 PIMREGQ9BSJ6 248 aa6.14□□□□□ -1.43
VPS39-204ENST00000561818 QTRT1Q9BXR0 403 aaKnown RBP6.14□□□□□ -1.43
VPS39-204ENST00000561818 EIF5A2Q9GZV4 153 aaKnown RBP6.14□□□□□ -1.43
VPS39-204ENST00000561818 SLC35B3Q9H1N7 401 aa6.14□□□□□ -1.43
VPS39-204ENST00000561818 LPAR2Q9HBW0 351 aa6.14□□□□□ -1.43
VPS39-204ENST00000561818 DPM3Q9P2X0 92 aa6.14□□□□□ -1.43
VPS39-204ENST00000561818 WDR83OSQ9Y284 106 aa6.14□□□□□ -1.43
VPS39-204ENST00000561818 POLR3KQ9Y2Y1 108 aaPredicted RBP6.14□□□□□ -1.43
VPS39-204ENST00000561818 USF3Q68DE3 2245 aa6.14□□□□□ -1.43
VPS39-204ENST00000561818 COL6A6A6NMZ7 2263 aa6.14□□□□□ -1.43
VPS39-204ENST00000561818 ZFHX4Q86UP3 3567 aa6.13□□□□□ -1.43
VPS39-204ENST00000561818 DSCAMO60469 2012 aa6.13□□□□□ -1.43
VPS39-204ENST00000561818 ARFGEF3Q5TH69 2177 aa6.13□□□□□ -1.43
VPS39-204ENST00000561818 PRR14LQ5THK1 2151 aa6.13□□□□□ -1.43
VPS39-204ENST00000561818 CTXND1A0A1B0GTU2 59 aa6.13□□□□□ -1.43
VPS39-204ENST00000561818 B4DEV8 164 aa6.13□□□□□ -1.43
VPS39-204ENST00000561818 RNASEK-C17orf49H0YIS7 233 aa6.13□□□□□ -1.43
VPS39-204ENST00000561818 H3BP45 60 aa6.13□□□□□ -1.43
VPS39-204ENST00000561818 SLC31A2O15432 143 aa6.13□□□□□ -1.43
VPS39-204ENST00000561818 PROP1O75360 226 aa6.13□□□□□ -1.43
VPS39-204ENST00000561818 PLAUP00749 431 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 232.7 ms